| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is hypF2 [H]
Identifier: 119356556
GI number: 119356556
Start: 822870
End: 825191
Strand: Direct
Name: hypF2 [H]
Synonym: Cpha266_0722
Alternate gene names: 119356556
Gene position: 822870-825191 (Clockwise)
Preceding gene: 119356555
Following gene: 119356557
Centisome position: 26.26
GC content: 52.2
Gene sequence:
>2322_bases ATGGCTCGAAAACAGAATGGAACAGAGCTGAACGTCGAGCCGGGAATCGGTGAAGTTCGCCGGGGTATTCTTGTTCACGG AATTGTTCAAGGGGTGGGGTTTCGTCCTTTTGTGTACCGTACGGCTAAAGCGCTTGGTCTGAGGGGATTTATCAAGAATA CCTCTTCAGGCGTTTCAGTGGAGGTGCAGGGTTCAGAGGATCTGATCGGAAAGTTTCTTTTTGAAGTGCAGCAACATGCT CCGCCGCTTGCAAAAATACATTCGTTTGAAGTACGCCCCATGATACCCGTAGAGGAAGATGGGTTCAGCATCGAGCTCTC TCTTGCAGGATCGGAGGTGGAGACACTGATTTCTCCGGATATCGCACTGTGCGTCGATTGCCGGCGAGAGCTCGCAGACC CTGAAAACCGTCGGTTTCAATACCCTTTTATCAACTGTACGAATTGCGGTCCCCGATTTACCATTGTTGAAAAAATTCCC TATGACCGGCAGTATACCTCAATGAAGGGGTTTGCGATGTGCCCGATATGCGATAAAGAGTATCATGATCCGCTTGACCG CCGTTTTCATGCTCAGCCGACAGCCTGCCGGGATTGCGGCCCCCGGATTGAGCTGCGGGATGCCTCCGGACAGAAGGTTC GCTGTATTGATGCTCTCGCTGAAGCCGCTGCACTTCTAAAAGATGGAAAGATTCTCGCGCTTAAAGGGGTCGGTGGGTTT CATCTTGCAGTTGATGCCCGAAACGATGCCGCCGTTCGTCTTCTGAGGGAAAGAAAAGGGCGCGAGGAGAAACCGTTTGC CGTTATGATGAGCGATATGGAACTTGTCCGGCAGTTCTGTGATGTGGAGCCTGAAGAGGCTTCGGCACTCCTTTCACCGG AAGCGCCCATTGTCTTGCTTGTAAAAAGGTCGATGAAAGGTCTTTCTGCCTCAATAGCTCCGGGAAACGACCGGCTTGGG GTAATGCTTCCCTATTCTCCTTTGCACAGTCTTCTTTTTGACCGTGGAGCAGATGTGCTGCTTATGACCAGCGCGAATTT CAGCGAGGAGCCCATTCTGCATGAAAACAGAGAGGCCATGGAGCGACTCGGTGGTATTGCTGATGCTTTTCTTCTGCATG ATCGGCCGATCCATATCCGTTGTGACGACTCAGTGACCATTTTTCTGTCAGGAAAACTACGGCAGATACGGCGCAGCAGA GGGTATGTTCCTGCACCTGTTTTTCTTTCCGGGGGAGGTGCTCCGGTGATGGGTACCGGTGGGGAACTGAAAAATACGCT CTGTTTTTTGAAGGGCAGCAAAGCGATCCTCAGTCAGCATATCGGTGATATGAAGAACTATGAGGCCTGGCAGCATTTTG AGCAGATATTCCGTCATTTGCAGGGTATTTTTCAGGTTTCACCCGAACTGCTTGTGCATGATCTGCACCCTGGCTATATG ACGACGCAGTGGGCTGCGGCGCAGCCTTTGCCGATGCTTGGAGTTCAGCACCATCATGCACATCTGGTTTCCTGTCTTGC TGAAAACAGGACGGATGGTCCGGCAATCGGGATTGTGCTTGACGGTACAGGGTACGGAACCGATGGGATGATATGGGGCG GTGAGGTGCTGATCGGAGATGCTTCGGAAGCGGAACGTTTTGCTTCGCTTGAGCCTATGCCTCTGCCGGGTGGAGATGCA GCCATCACACAACCCTGGCGGGCGGCTCTCGGTTATCTTTTTAGAAGTTTTTCCGTTCTGCCTGAACTGCCCTTTATGAG CGGAAAACCGGCAGGCTTGGTGCTTGAACTTCTTGAAAAAAAGCTCAATACCCCTGAAACCTCAAGTTGCGGAAGGTTGT TTGATGTCGTTGCGGCGCTTTCCGGGATATGCGACCGGATCACCTTTGAAGGACAGGCGGCAATTGCCCTTATGCAGGCT GCTGGCGGCAGTATTGGTCGGGAGGGTTTTTCTTTTTCTTTTGAGGAAAATGCCGGAGGCCTCCGTATACTGGTTGCTCC CCTTGTTCGGGAAATTGCCGATGCTCTGGGTAAAGGGATGTCTCCGGGTGAGGTCAGCAGGAGGTTTCATCGCACGCTGG TTGATTGTTTTCTGGAAATCACCCTGAAGGCCTCACAACAGAGCGGTGTGAAAACAGTTGCCTTAAGCGGCGGAGTGTTT CAGAACGAGCTGCTTTTTGAGGCGCTTATACAGGAGCTTGAACATGCCGGTTACCGGGTACTTACGCACAGAGAGGTGCC GACAAATGATGGAGGTCTCTGTCTCGGTCAGGCAGTTATCGGTCGCCGGTTTCTCGAAGGTCGATATCGAGGAGTCCGGT AA
Upstream 100 bases:
>100_bases ATTCTGCGCAATGCAAAAAGAACGCACTTTCGATCAATCACCACCTTGAATGGTTTGAGGTTTCGGCCAAGACCGGAGAG GGTCTCGAACTCTTGATGCA
Downstream 100 bases:
>100_bases TTATTTTCCTTTTCTTTCAGAACTCCTGTAACGTTCGTCCAATATAAAACCTACAAGCCAATGTGTCTTGCAATACCAGG AAAAGTGCTCGAACTCTTTG
Product: (NiFe) hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF2; [NiFe]-hydrogenase maturation factor hypF2; Hydrogenase maturation protein hypF2 [H]
Number of amino acids: Translated: 773; Mature: 772
Protein sequence:
>773_residues MARKQNGTELNVEPGIGEVRRGILVHGIVQGVGFRPFVYRTAKALGLRGFIKNTSSGVSVEVQGSEDLIGKFLFEVQQHA PPLAKIHSFEVRPMIPVEEDGFSIELSLAGSEVETLISPDIALCVDCRRELADPENRRFQYPFINCTNCGPRFTIVEKIP YDRQYTSMKGFAMCPICDKEYHDPLDRRFHAQPTACRDCGPRIELRDASGQKVRCIDALAEAAALLKDGKILALKGVGGF HLAVDARNDAAVRLLRERKGREEKPFAVMMSDMELVRQFCDVEPEEASALLSPEAPIVLLVKRSMKGLSASIAPGNDRLG VMLPYSPLHSLLFDRGADVLLMTSANFSEEPILHENREAMERLGGIADAFLLHDRPIHIRCDDSVTIFLSGKLRQIRRSR GYVPAPVFLSGGGAPVMGTGGELKNTLCFLKGSKAILSQHIGDMKNYEAWQHFEQIFRHLQGIFQVSPELLVHDLHPGYM TTQWAAAQPLPMLGVQHHHAHLVSCLAENRTDGPAIGIVLDGTGYGTDGMIWGGEVLIGDASEAERFASLEPMPLPGGDA AITQPWRAALGYLFRSFSVLPELPFMSGKPAGLVLELLEKKLNTPETSSCGRLFDVVAALSGICDRITFEGQAAIALMQA AGGSIGREGFSFSFEENAGGLRILVAPLVREIADALGKGMSPGEVSRRFHRTLVDCFLEITLKASQQSGVKTVALSGGVF QNELLFEALIQELEHAGYRVLTHREVPTNDGGLCLGQAVIGRRFLEGRYRGVR
Sequences:
>Translated_773_residues MARKQNGTELNVEPGIGEVRRGILVHGIVQGVGFRPFVYRTAKALGLRGFIKNTSSGVSVEVQGSEDLIGKFLFEVQQHA PPLAKIHSFEVRPMIPVEEDGFSIELSLAGSEVETLISPDIALCVDCRRELADPENRRFQYPFINCTNCGPRFTIVEKIP YDRQYTSMKGFAMCPICDKEYHDPLDRRFHAQPTACRDCGPRIELRDASGQKVRCIDALAEAAALLKDGKILALKGVGGF HLAVDARNDAAVRLLRERKGREEKPFAVMMSDMELVRQFCDVEPEEASALLSPEAPIVLLVKRSMKGLSASIAPGNDRLG VMLPYSPLHSLLFDRGADVLLMTSANFSEEPILHENREAMERLGGIADAFLLHDRPIHIRCDDSVTIFLSGKLRQIRRSR GYVPAPVFLSGGGAPVMGTGGELKNTLCFLKGSKAILSQHIGDMKNYEAWQHFEQIFRHLQGIFQVSPELLVHDLHPGYM TTQWAAAQPLPMLGVQHHHAHLVSCLAENRTDGPAIGIVLDGTGYGTDGMIWGGEVLIGDASEAERFASLEPMPLPGGDA AITQPWRAALGYLFRSFSVLPELPFMSGKPAGLVLELLEKKLNTPETSSCGRLFDVVAALSGICDRITFEGQAAIALMQA AGGSIGREGFSFSFEENAGGLRILVAPLVREIADALGKGMSPGEVSRRFHRTLVDCFLEITLKASQQSGVKTVALSGGVF QNELLFEALIQELEHAGYRVLTHREVPTNDGGLCLGQAVIGRRFLEGRYRGVR >Mature_772_residues ARKQNGTELNVEPGIGEVRRGILVHGIVQGVGFRPFVYRTAKALGLRGFIKNTSSGVSVEVQGSEDLIGKFLFEVQQHAP PLAKIHSFEVRPMIPVEEDGFSIELSLAGSEVETLISPDIALCVDCRRELADPENRRFQYPFINCTNCGPRFTIVEKIPY DRQYTSMKGFAMCPICDKEYHDPLDRRFHAQPTACRDCGPRIELRDASGQKVRCIDALAEAAALLKDGKILALKGVGGFH LAVDARNDAAVRLLRERKGREEKPFAVMMSDMELVRQFCDVEPEEASALLSPEAPIVLLVKRSMKGLSASIAPGNDRLGV MLPYSPLHSLLFDRGADVLLMTSANFSEEPILHENREAMERLGGIADAFLLHDRPIHIRCDDSVTIFLSGKLRQIRRSRG YVPAPVFLSGGGAPVMGTGGELKNTLCFLKGSKAILSQHIGDMKNYEAWQHFEQIFRHLQGIFQVSPELLVHDLHPGYMT TQWAAAQPLPMLGVQHHHAHLVSCLAENRTDGPAIGIVLDGTGYGTDGMIWGGEVLIGDASEAERFASLEPMPLPGGDAA ITQPWRAALGYLFRSFSVLPELPFMSGKPAGLVLELLEKKLNTPETSSCGRLFDVVAALSGICDRITFEGQAAIALMQAA GGSIGREGFSFSFEENAGGLRILVAPLVREIADALGKGMSPGEVSRRFHRTLVDCFLEITLKASQQSGVKTVALSGGVFQ NELLFEALIQELEHAGYRVLTHREVPTNDGGLCLGQAVIGRRFLEGRYRGVR
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=760, Percent_Identity=41.5789473684211, Blast_Score=484, Evalue=1e-137,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 84571; Mature: 84439
Theoretical pI: Translated: 6.58; Mature: 6.58
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARKQNGTELNVEPGIGEVRRGILVHGIVQGVGFRPFVYRTAKALGLRGFIKNTSSGVSV CCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEE EVQGSEDLIGKFLFEVQQHAPPLAKIHSFEVRPMIPVEEDGFSIELSLAGSEVETLISPD EECCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHCCC IALCVDCRRELADPENRRFQYPFINCTNCGPRFTIVEKIPYDRQYTSMKGFAMCPICDKE HHHHHHHHHHHCCCCCCEEECCEEEECCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHH YHDPLDRRFHAQPTACRDCGPRIELRDASGQKVRCIDALAEAAALLKDGKILALKGVGGF HCCCHHHHCCCCCCHHHCCCCCEEEECCCCCEEHHHHHHHHHHHHHCCCCEEEEECCCCE HLAVDARNDAAVRLLRERKGREEKPFAVMMSDMELVRQFCDVEPEEASALLSPEAPIVLL EEEEECCCHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCHHHHHEEECCCCCEEEE VKRSMKGLSASIAPGNDRLGVMLPYSPLHSLLFDRGADVLLMTSANFSEEPILHENREAM EEHHHCCCEEECCCCCCCEEEEECCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHH ERLGGIADAFLLHDRPIHIRCDDSVTIFLSGKLRQIRRSRGYVPAPVFLSGGGAPVMGTG HHHCCHHHHHHCCCCCEEEEECCCEEEEECCHHHHHHHHCCCCCCCEEECCCCCCEECCC GELKNTLCFLKGSKAILSQHIGDMKNYEAWQHFEQIFRHLQGIFQVSPELLVHDLHPGYM CCCCCEEEEEECCHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCE TTQWAAAQPLPMLGVQHHHAHLVSCLAENRTDGPAIGIVLDGTGYGTDGMIWGGEVLIGD EECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEECCEEEEEC ASEAERFASLEPMPLPGGDAAITQPWRAALGYLFRSFSVLPELPFMSGKPAGLVLELLEK CHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH KLNTPETSSCGRLFDVVAALSGICDRITFEGQAAIALMQAAGGSIGREGFSFSFEENAGG HCCCCCCCHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHCCCCCCCCCCEEEECCCCCC LRILVAPLVREIADALGKGMSPGEVSRRFHRTLVDCFLEITLKASQQSGVKTVALSGGVF EEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCH QNELLFEALIQELEHAGYRVLTHREVPTNDGGLCLGQAVIGRRFLEGRYRGVR HHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure ARKQNGTELNVEPGIGEVRRGILVHGIVQGVGFRPFVYRTAKALGLRGFIKNTSSGVSV CCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEE EVQGSEDLIGKFLFEVQQHAPPLAKIHSFEVRPMIPVEEDGFSIELSLAGSEVETLISPD EECCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHCCC IALCVDCRRELADPENRRFQYPFINCTNCGPRFTIVEKIPYDRQYTSMKGFAMCPICDKE HHHHHHHHHHHCCCCCCEEECCEEEECCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHH YHDPLDRRFHAQPTACRDCGPRIELRDASGQKVRCIDALAEAAALLKDGKILALKGVGGF HCCCHHHHCCCCCCHHHCCCCCEEEECCCCCEEHHHHHHHHHHHHHCCCCEEEEECCCCE HLAVDARNDAAVRLLRERKGREEKPFAVMMSDMELVRQFCDVEPEEASALLSPEAPIVLL EEEEECCCHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCHHHHHEEECCCCCEEEE VKRSMKGLSASIAPGNDRLGVMLPYSPLHSLLFDRGADVLLMTSANFSEEPILHENREAM EEHHHCCCEEECCCCCCCEEEEECCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHH ERLGGIADAFLLHDRPIHIRCDDSVTIFLSGKLRQIRRSRGYVPAPVFLSGGGAPVMGTG HHHCCHHHHHHCCCCCEEEEECCCEEEEECCHHHHHHHHCCCCCCCEEECCCCCCEECCC GELKNTLCFLKGSKAILSQHIGDMKNYEAWQHFEQIFRHLQGIFQVSPELLVHDLHPGYM CCCCCEEEEEECCHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCE TTQWAAAQPLPMLGVQHHHAHLVSCLAENRTDGPAIGIVLDGTGYGTDGMIWGGEVLIGD EECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEECCEEEEEC ASEAERFASLEPMPLPGGDAAITQPWRAALGYLFRSFSVLPELPFMSGKPAGLVLELLEK CHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH KLNTPETSSCGRLFDVVAALSGICDRITFEGQAAIALMQAAGGSIGREGFSFSFEENAGG HCCCCCCCHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHCCCCCCCCCCEEEECCCCCC LRILVAPLVREIADALGKGMSPGEVSRRFHRTLVDCFLEITLKASQQSGVKTVALSGGVF EEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCH QNELLFEALIQELEHAGYRVLTHREVPTNDGGLCLGQAVIGRRFLEGRYRGVR HHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9799289; 12948488 [H]