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The map label for this gene is yggS [C]

Identifier: 119356538

GI number: 119356538

Start: 803869

End: 804558

Strand: Reverse

Name: yggS [C]

Synonym: Cpha266_0703

Alternate gene names: 119356538

Gene position: 804558-803869 (Counterclockwise)

Preceding gene: 119356539

Following gene: 119356537

Centisome position: 25.67

GC content: 50.87

Gene sequence:

>690_bases
ATGGAGAGCATAGCGTCCAACCTTAACCGTATCAGGGAACAGATCGGCACTCTCTCGGTGAAAGCCGGCAGAGAACCCTC
TGATGTTCGACTGATAGCCGTTTCGAAAACCAAACCTGCCCGGCTTGTCAGAGAAGCTTTTGACGCCGGGCAGATCGAGT
TCGGTGAAAGCTATGTCCAGGAATTTCTTGAAAAACGTGATGATCCCCTGCTTCAGGGACTCCCCCTTCAGTGGCATTTT
ATCGGACATCTCCAGTCAAACAAAATTCGCTCGATTGCAGGCAAAGTTGCTCTTGTGCATGGCATAGACCGATTATCAAC
AGCCGCAGAGCTTTCAAGGCGCTCTATGCAGCAAAACCTGCATACCGAGTTCCTCCTTGAAGTAAACACATCGGGGGAGC
AAACGAAATATGGAATCAGCCCGGACGTTCTGCTTTCGGAAGCGGAAAAAATCTTCAAACTCCCGAACATCGCGCTTCGT
GGCCTCATGACTATAGCGTCGCCAGACACAGACCTTGCCCGCAAAGAGTTCAGAGAACTTCGAAACCTTCTTGAAGCGCT
GAAAAAAAACGCACCCGACCCAACCCTTCTTACCGAACTTTCCATGGGCATGAGCCAGGATTTCGAATCGGCTATCGAGG
AAGGGGCAACCATCATCCGTATCGGAACAGCAATTTTCGGCTGGCGCTGA

Upstream 100 bases:

>100_bases
AAAAAATAGCCTCCGTAAAAACAGACCCCAACGACAATCCTGTCGATCCCGTAACGATCACCACCATCGTGCCTGTTTTA
CAAGCATCATAGACACGGCA

Downstream 100 bases:

>100_bases
TACCTTCAGCCATTCGGCGAAACATCCTCCAGCTTTTTTCTCTGCACTGAACATCATATATTGCATAACTTTTTTACTGT
TTCTCTGCCTGATCAACAAG

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MESIASNLNRIREQIGTLSVKAGREPSDVRLIAVSKTKPARLVREAFDAGQIEFGESYVQEFLEKRDDPLLQGLPLQWHF
IGHLQSNKIRSIAGKVALVHGIDRLSTAAELSRRSMQQNLHTEFLLEVNTSGEQTKYGISPDVLLSEAEKIFKLPNIALR
GLMTIASPDTDLARKEFRELRNLLEALKKNAPDPTLLTELSMGMSQDFESAIEEGATIIRIGTAIFGWR

Sequences:

>Translated_229_residues
MESIASNLNRIREQIGTLSVKAGREPSDVRLIAVSKTKPARLVREAFDAGQIEFGESYVQEFLEKRDDPLLQGLPLQWHF
IGHLQSNKIRSIAGKVALVHGIDRLSTAAELSRRSMQQNLHTEFLLEVNTSGEQTKYGISPDVLLSEAEKIFKLPNIALR
GLMTIASPDTDLARKEFRELRNLLEALKKNAPDPTLLTELSMGMSQDFESAIEEGATIIRIGTAIFGWR
>Mature_229_residues
MESIASNLNRIREQIGTLSVKAGREPSDVRLIAVSKTKPARLVREAFDAGQIEFGESYVQEFLEKRDDPLLQGLPLQWHF
IGHLQSNKIRSIAGKVALVHGIDRLSTAAELSRRSMQQNLHTEFLLEVNTSGEQTKYGISPDVLLSEAEKIFKLPNIALR
GLMTIASPDTDLARKEFRELRNLLEALKKNAPDPTLLTELSMGMSQDFESAIEEGATIIRIGTAIFGWR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=224, Percent_Identity=40.625, Blast_Score=146, Evalue=2e-35,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=42.2413793103448, Blast_Score=166, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI17533025, Length=220, Percent_Identity=37.2727272727273, Blast_Score=120, Evalue=6e-28,
Organism=Saccharomyces cerevisiae, GI6319435, Length=222, Percent_Identity=38.2882882882883, Blast_Score=114, Evalue=2e-26,
Organism=Drosophila melanogaster, GI45550861, Length=219, Percent_Identity=39.7260273972603, Blast_Score=130, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25568; Mature: 25568

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESIASNLNRIREQIGTLSVKAGREPSDVRLIAVSKTKPARLVREAFDAGQIEFGESYVQ
CCHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEECCCCHHHHHHHHHCCCCCHHCHHHHH
EFLEKRDDPLLQGLPLQWHFIGHLQSNKIRSIAGKVALVHGIDRLSTAAELSRRSMQQNL
HHHHCCCCHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
HTEFLLEVNTSGEQTKYGISPDVLLSEAEKIFKLPNIALRGLMTIASPDTDLARKEFREL
CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH
RNLLEALKKNAPDPTLLTELSMGMSQDFESAIEEGATIIRIGTAIFGWR
HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHCCCEEEEEHHHHHCCC
>Mature Secondary Structure
MESIASNLNRIREQIGTLSVKAGREPSDVRLIAVSKTKPARLVREAFDAGQIEFGESYVQ
CCHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEECCCCHHHHHHHHHCCCCCHHCHHHHH
EFLEKRDDPLLQGLPLQWHFIGHLQSNKIRSIAGKVALVHGIDRLSTAAELSRRSMQQNL
HHHHCCCCHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
HTEFLLEVNTSGEQTKYGISPDVLLSEAEKIFKLPNIALRGLMTIASPDTDLARKEFREL
CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH
RNLLEALKKNAPDPTLLTELSMGMSQDFESAIEEGATIIRIGTAIFGWR
HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHCCCEEEEEHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]