| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
Click here to switch to the map view.
The map label for this gene is czcD [H]
Identifier: 119356528
GI number: 119356528
Start: 791619
End: 792557
Strand: Direct
Name: czcD [H]
Synonym: Cpha266_0693
Alternate gene names: 119356528
Gene position: 791619-792557 (Clockwise)
Preceding gene: 119356527
Following gene: 119356529
Centisome position: 25.26
GC content: 50.37
Gene sequence:
>939_bases ATGGCCAACAACGCTGTATCAGCAGGTGATCATCATCATCATTCCGACGGGCATGATCATGTTCATCATCACGCTGCGAA AAATATCAAAACCGCATTTTTTCTTAATCTTGGCTTTACCCTTGTTGAAATAATCGGTGGTTTTATTACCGGCAGTACGG CAATTCTTGCCAATGCCGTGCACGATCTTGGAGATTCGTTTGCGCTTGGCCAGGCATGGTATTTTGAACGTCTCTCCGGT GAAAAAAGCAACGCCCGCTACTCCTATGGTTACAAGCGCTTTTCGCTTCTTGGCGCGCTTATCAGCACCGTGTTTCTTCT TGGCAGTTCGCTCTTTGTGCTGGCCGGGGCTGTGCCAAGGATTCTTCATCCCCATCATCCTGATGCGGGCGGGATGATTC TTCTTGCGGTCATCGGTGTTGCCGTCAACGGCATCGCCATGGCAAGGCTGTCAAAAGAGAGCGGCATGAACGCAAGGGTT GTTGCACTGCACCTTCTTGAAGATGTGCTTGGATGGCTAACGGTGCTTCTTGTCGGTATTGTGCTCATATTCTGGAACTT GCCCGTTCTCGATCCGGTGCTTGCGGTACTCATCACCCTCTACATCCTTCGCGGCGTCGTAAAAAATCTCATGGCACAGA TTCCTGTTTTTCTCCAGGCGGTACCTGCCGAACTCGATCTTTCAGCAATTTCAGCCGAAATAGAAGCAATGAGTACGGTT CGGGCTGTTCATCATGCGCACATCTGGTCGCTTGACGGCAGTCACAACGTCTTTACCGTCCACCTTGAAGTTGAACGGAT GCTCGATGCCGAAGATTACATGCAGTTGAAAGACCGCATTAAAACCCTTGTTAAACAACACGGCATCTACCACTCAACCG TCGAGATCGAGTTTCCCGGCGAGATATGCCGGAATATGCCTGATGCCGGGACTGGGTAG
Upstream 100 bases:
>100_bases GTGTTTGAATGAAAAGAGGTGTTATACCAATAGCATTGATGTGCGATTCAAGGGCTGCGTGTCGGGAAGAGCAAAAGGAT AATATAACGGGCTTTATCTC
Downstream 100 bases:
>100_bases TAGGGTGTGGGTAGTAGGGTGTGGGGAGTGGGTTTGTTTATTTTCCTGAATGTCTTCGTGTTACCGGTAAATTTTTTTCT GTCATCCCGATTTTTTTCCT
Product: cation diffusion facilitator family transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MANNAVSAGDHHHHSDGHDHVHHHAAKNIKTAFFLNLGFTLVEIIGGFITGSTAILANAVHDLGDSFALGQAWYFERLSG EKSNARYSYGYKRFSLLGALISTVFLLGSSLFVLAGAVPRILHPHHPDAGGMILLAVIGVAVNGIAMARLSKESGMNARV VALHLLEDVLGWLTVLLVGIVLIFWNLPVLDPVLAVLITLYILRGVVKNLMAQIPVFLQAVPAELDLSAISAEIEAMSTV RAVHHAHIWSLDGSHNVFTVHLEVERMLDAEDYMQLKDRIKTLVKQHGIYHSTVEIEFPGEICRNMPDAGTG
Sequences:
>Translated_312_residues MANNAVSAGDHHHHSDGHDHVHHHAAKNIKTAFFLNLGFTLVEIIGGFITGSTAILANAVHDLGDSFALGQAWYFERLSG EKSNARYSYGYKRFSLLGALISTVFLLGSSLFVLAGAVPRILHPHHPDAGGMILLAVIGVAVNGIAMARLSKESGMNARV VALHLLEDVLGWLTVLLVGIVLIFWNLPVLDPVLAVLITLYILRGVVKNLMAQIPVFLQAVPAELDLSAISAEIEAMSTV RAVHHAHIWSLDGSHNVFTVHLEVERMLDAEDYMQLKDRIKTLVKQHGIYHSTVEIEFPGEICRNMPDAGTG >Mature_311_residues ANNAVSAGDHHHHSDGHDHVHHHAAKNIKTAFFLNLGFTLVEIIGGFITGSTAILANAVHDLGDSFALGQAWYFERLSGE KSNARYSYGYKRFSLLGALISTVFLLGSSLFVLAGAVPRILHPHHPDAGGMILLAVIGVAVNGIAMARLSKESGMNARVV ALHLLEDVLGWLTVLLVGIVLIFWNLPVLDPVLAVLITLYILRGVVKNLMAQIPVFLQAVPAELDLSAISAEIEAMSTVR AVHHAHIWSLDGSHNVFTVHLEVERMLDAEDYMQLKDRIKTLVKQHGIYHSTVEIEFPGEICRNMPDAGTG
Specific function: Involved in divalent cation and potassium homeostasis in the cell. Catalyzes the active efflux of zinc, cadmium and cobalt, in exchange for potassium and H(+) ions [H]
COG id: COG1230
COG function: function code P; Co/Zn/Cd efflux system component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. SLC30A subfamily [H]
Homologues:
Organism=Homo sapiens, GI52352805, Length=325, Percent_Identity=24.3076923076923, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI64762489, Length=310, Percent_Identity=25.1612903225806, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI289803013, Length=290, Percent_Identity=25.1724137931034, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI289803009, Length=290, Percent_Identity=25.1724137931034, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI289803007, Length=290, Percent_Identity=25.1724137931034, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI289803003, Length=290, Percent_Identity=25.1724137931034, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI21359890, Length=322, Percent_Identity=21.7391304347826, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI52352803, Length=217, Percent_Identity=25.8064516129032, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI52351208, Length=162, Percent_Identity=25.9259259259259, Blast_Score=67, Evalue=3e-11, Organism=Escherichia coli, GI1786966, Length=278, Percent_Identity=30.5755395683453, Blast_Score=115, Evalue=5e-27, Organism=Caenorhabditis elegans, GI17555794, Length=311, Percent_Identity=25.7234726688103, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI193210990, Length=324, Percent_Identity=25, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17555796, Length=314, Percent_Identity=24.8407643312102, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI32564488, Length=290, Percent_Identity=25.5172413793103, Blast_Score=95, Evalue=4e-20, Organism=Drosophila melanogaster, GI24656728, Length=160, Percent_Identity=30, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24656724, Length=160, Percent_Identity=30, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24656720, Length=160, Percent_Identity=30, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24656715, Length=160, Percent_Identity=30, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI21357035, Length=160, Percent_Identity=30, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002524 [H]
Pfam domain/function: PF01545 Cation_efflux [H]
EC number: NA
Molecular weight: Translated: 33957; Mature: 33826
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANNAVSAGDHHHHSDGHDHVHHHAAKNIKTAFFLNLGFTLVEIIGGFITGSTAILANAV CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH HDLGDSFALGQAWYFERLSGEKSNARYSYGYKRFSLLGALISTVFLLGSSLFVLAGAVPR HHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILHPHHPDAGGMILLAVIGVAVNGIAMARLSKESGMNARVVALHLLEDVLGWLTVLLVGI HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH VLIFWNLPVLDPVLAVLITLYILRGVVKNLMAQIPVFLQAVPAELDLSAISAEIEAMSTV HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH RAVHHAHIWSLDGSHNVFTVHLEVERMLDAEDYMQLKDRIKTLVKQHGIYHSTVEIEFPG HHHHHHHEEECCCCCCEEEEEEEHHHHHCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCH EICRNMPDAGTG HHHCCCCCCCCC >Mature Secondary Structure ANNAVSAGDHHHHSDGHDHVHHHAAKNIKTAFFLNLGFTLVEIIGGFITGSTAILANAV CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH HDLGDSFALGQAWYFERLSGEKSNARYSYGYKRFSLLGALISTVFLLGSSLFVLAGAVPR HHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILHPHHPDAGGMILLAVIGVAVNGIAMARLSKESGMNARVVALHLLEDVLGWLTVLLVGI HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH VLIFWNLPVLDPVLAVLITLYILRGVVKNLMAQIPVFLQAVPAELDLSAISAEIEAMSTV HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH RAVHHAHIWSLDGSHNVFTVHLEVERMLDAEDYMQLKDRIKTLVKQHGIYHSTVEIEFPG HHHHHHHEEECCCCCCEEEEEEEHHHHHCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCH EICRNMPDAGTG HHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA