| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is icd [H]
Identifier: 119356515
GI number: 119356515
Start: 776572
End: 778797
Strand: Direct
Name: icd [H]
Synonym: Cpha266_0680
Alternate gene names: 119356515
Gene position: 776572-778797 (Clockwise)
Preceding gene: 119356514
Following gene: 119356520
Centisome position: 24.78
GC content: 49.51
Gene sequence:
>2226_bases ATGGGAAAGAGTTCGACCATTATTTATACTAAAATTGATGAGGCCCCAGCCTTGGCTACCTATTCGCTGCTTCCGGTAAT CCAGGCCTTTGCAAAGGGAACCGGAGTGGATGTTGAGACAAGGGATATTTCGCTTGCAGGCCGAATCATAGCGAATTTTC CGGACAATCTGACTGAAGAGCAGAAAATCTCGGATCAGCTTGCAGAACTGGGCCAGTTGGCTCTTACACCTGAAGCCAAT ATTATCAAGCTCCCAAATATCAGCGCATCTTTACCTCAATTGCAGGCTGCAATAAAAGAGCTGCAGTCACATGGGTATAA TATTCCTGACTACCCGGAAGCACCTGAAAACGATGCTGAAAAAGAGATTCAGTTACGCTACGCAAAAGTGCTTGGCAGCG CCGTTAACCCGGTGTTGCGCGAAGGTAATTCCGATCGTCGCGCGCCGCTTTCGGTGAAGCAGTTTGCAAAGAAGCATCCG CACAAAATGGGTGCGTGGAGCAACGACTCGCAATCACACGTAGCCCATATGCATAGCGGCGATTTTTATGGCAGCGAACA ATCTCTTACCGTGCAGGAACCCACATCGGTACGCATCGAGTTTGTTGACGGCAGTGGCTCGGTCAAGGTTCTGAAAGAGA AAACTGCTCTGCTCAAAGGCGAGGTGATCGATACGGCGGTTATGAACATTCGTTCACTGCGACAGTTTTTTGCGGATCAG ATTGCCGATGCAAAAGCAAGCGGAATTCTGCTCTCCCTGCATTTGAAGGCAACCATGATGAAGGTTTCTGATCCTGTCAT GTTCGGACATGCGGTTACGGTATTTTACAAGGATGTATTTGATAAATATGCCGCACTCATCAAAGAGCTCGGCGTAAACG TTAATAATGGTCTTGGTGATCTTTACGTAAAAATCAAGAACCTGCCTGACGCGCAGCGTGCGGAAATCGAGGCTGACATT CAGGCTGTTTACGCAACCCGTCCAGCTCTTGCCATGGTTGATTCCGACAAAGGAATAACCAATCTGCATGTGCCTAACGA TATTATCGTCGATGCATCCATGCCTGTTGTTATCCGCGATTCAGGTAAAATGTGGGGCCCCGACGGTAAACTGCACGACA CGAAAGCCATGATTCCCGACCGTTGCTATGCAACCATGTATCAGGCGATGGTGGAAGATTGCAAAGCCCATGGCGCATTT GATCCGTCTACGGTCGGCAGTGTTCCCAATGTCGGGCTGATGGCTCAGAAAGCGGAAGAGTATGGTTCACACGATAAAAC TTTCATGGCTCCAGGAAACGGTTCTGTCCGGGTTGTTGATGCTGCCGGTTCTGTTCTGATGGAGCAGCCGGTCGAAGAGG GTGATATTTTCAGAATGTGTCAGGTTAAGGATGCTCCTGTTCGTGACTGGGTTAAACTTGCTGTCAATCGTGCAAAAGCA ACCGGGGTACCTGCGGTATTCTGGCTCGACAGCAATCGTGCGCACGACAGGGAGATTATCGCGAAGGTTGACGAGTACCT TAAAGAGTACGATACAACCGGTCTTGAAATCTGTATTTTGACTCCGGTAGAGGCCATGAAGTTTTCGCTCGAACGGTTCA GGGCTGGTAAAGACACTATTTCCGTAACAGGGAACGTACTTCGTGATTACCTGACCGATCTTTTCCCGATCATAGAGCTT GGTACCAGTGCAAAAATGCTCTCAATTGTACCGCTTATGAACGGAGGCGGACTTTTTGAAACCGGCGCAGGCGGTTCAGC TCCCAAACATGTGCAGCAGTTTCAGAAAGAGGGATACCTCCGCTGGGATTCCCTTGGCGAATTCTCGGCGCTCGCCGCAT CGCTCGAGTATCTTGCAAATGCTTTCAGGAACAGCAAGGCGCAGGTTCTTGCCGATACGCTTGATCAGGCCATAGGCAAG TTTCTCGATAACAGCAAATCACCGGCTCGCAAGGTTGGTCAGATTGACAATCGTGGAAGCCACTTCTACCTTGCGCTCTA TTGGGCAGAGGCTCTTGCTGCTCAAAGTGGAGATCAGGAACTTCAGGCTCGTTTTGCAGGAGTCGCACAGCAACTCGCAG AAAACGAAGCGGTTATCAATGCTGAACTTATCGGAGCGCAGGGCAGCCCTGTCGATATGGGCGGTTATTATCATCCAAGC GATGAGCTGACTTCAAAAGCAATGCGTCCAAGTGCAACCTTCAATGCTATCATTGATGCCATGTAA
Upstream 100 bases:
>100_bases AATCGTTGAACCTTGCCGGTTTGTTTGTTCGTAACAGGGTATGTGGTAAAAAAACTTGTCATAACTTCAGTATTTCATAA TAAAAAAAATGTAAAAAACT
Downstream 100 bases:
>100_bases GGTGACGAACAGCATCTGTCAGAAAAGCCCGGATTTTCCGGGCTTTTTCTGTTTCAGCTATGACGGGAGGAGAACTTTTT TTACGACGGCATCTACATGT
Product: isocitrate dehydrogenase, NADP-dependent
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 741; Mature: 740
Protein sequence:
>741_residues MGKSSTIIYTKIDEAPALATYSLLPVIQAFAKGTGVDVETRDISLAGRIIANFPDNLTEEQKISDQLAELGQLALTPEAN IIKLPNISASLPQLQAAIKELQSHGYNIPDYPEAPENDAEKEIQLRYAKVLGSAVNPVLREGNSDRRAPLSVKQFAKKHP HKMGAWSNDSQSHVAHMHSGDFYGSEQSLTVQEPTSVRIEFVDGSGSVKVLKEKTALLKGEVIDTAVMNIRSLRQFFADQ IADAKASGILLSLHLKATMMKVSDPVMFGHAVTVFYKDVFDKYAALIKELGVNVNNGLGDLYVKIKNLPDAQRAEIEADI QAVYATRPALAMVDSDKGITNLHVPNDIIVDASMPVVIRDSGKMWGPDGKLHDTKAMIPDRCYATMYQAMVEDCKAHGAF DPSTVGSVPNVGLMAQKAEEYGSHDKTFMAPGNGSVRVVDAAGSVLMEQPVEEGDIFRMCQVKDAPVRDWVKLAVNRAKA TGVPAVFWLDSNRAHDREIIAKVDEYLKEYDTTGLEICILTPVEAMKFSLERFRAGKDTISVTGNVLRDYLTDLFPIIEL GTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFQKEGYLRWDSLGEFSALAASLEYLANAFRNSKAQVLADTLDQAIGK FLDNSKSPARKVGQIDNRGSHFYLALYWAEALAAQSGDQELQARFAGVAQQLAENEAVINAELIGAQGSPVDMGGYYHPS DELTSKAMRPSATFNAIIDAM
Sequences:
>Translated_741_residues MGKSSTIIYTKIDEAPALATYSLLPVIQAFAKGTGVDVETRDISLAGRIIANFPDNLTEEQKISDQLAELGQLALTPEAN IIKLPNISASLPQLQAAIKELQSHGYNIPDYPEAPENDAEKEIQLRYAKVLGSAVNPVLREGNSDRRAPLSVKQFAKKHP HKMGAWSNDSQSHVAHMHSGDFYGSEQSLTVQEPTSVRIEFVDGSGSVKVLKEKTALLKGEVIDTAVMNIRSLRQFFADQ IADAKASGILLSLHLKATMMKVSDPVMFGHAVTVFYKDVFDKYAALIKELGVNVNNGLGDLYVKIKNLPDAQRAEIEADI QAVYATRPALAMVDSDKGITNLHVPNDIIVDASMPVVIRDSGKMWGPDGKLHDTKAMIPDRCYATMYQAMVEDCKAHGAF DPSTVGSVPNVGLMAQKAEEYGSHDKTFMAPGNGSVRVVDAAGSVLMEQPVEEGDIFRMCQVKDAPVRDWVKLAVNRAKA TGVPAVFWLDSNRAHDREIIAKVDEYLKEYDTTGLEICILTPVEAMKFSLERFRAGKDTISVTGNVLRDYLTDLFPIIEL GTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFQKEGYLRWDSLGEFSALAASLEYLANAFRNSKAQVLADTLDQAIGK FLDNSKSPARKVGQIDNRGSHFYLALYWAEALAAQSGDQELQARFAGVAQQLAENEAVINAELIGAQGSPVDMGGYYHPS DELTSKAMRPSATFNAIIDAM >Mature_740_residues GKSSTIIYTKIDEAPALATYSLLPVIQAFAKGTGVDVETRDISLAGRIIANFPDNLTEEQKISDQLAELGQLALTPEANI IKLPNISASLPQLQAAIKELQSHGYNIPDYPEAPENDAEKEIQLRYAKVLGSAVNPVLREGNSDRRAPLSVKQFAKKHPH KMGAWSNDSQSHVAHMHSGDFYGSEQSLTVQEPTSVRIEFVDGSGSVKVLKEKTALLKGEVIDTAVMNIRSLRQFFADQI ADAKASGILLSLHLKATMMKVSDPVMFGHAVTVFYKDVFDKYAALIKELGVNVNNGLGDLYVKIKNLPDAQRAEIEADIQ AVYATRPALAMVDSDKGITNLHVPNDIIVDASMPVVIRDSGKMWGPDGKLHDTKAMIPDRCYATMYQAMVEDCKAHGAFD PSTVGSVPNVGLMAQKAEEYGSHDKTFMAPGNGSVRVVDAAGSVLMEQPVEEGDIFRMCQVKDAPVRDWVKLAVNRAKAT GVPAVFWLDSNRAHDREIIAKVDEYLKEYDTTGLEICILTPVEAMKFSLERFRAGKDTISVTGNVLRDYLTDLFPIIELG TSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFQKEGYLRWDSLGEFSALAASLEYLANAFRNSKAQVLADTLDQAIGKF LDNSKSPARKVGQIDNRGSHFYLALYWAEALAAQSGDQELQARFAGVAQQLAENEAVINAELIGAQGSPVDMGGYYHPSD ELTSKAMRPSATFNAIIDAM
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 80617; Mature: 80485
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKSSTIIYTKIDEAPALATYSLLPVIQAFAKGTGVDVETRDISLAGRIIANFPDNLTEE CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHCCCCCCCCHH QKISDQLAELGQLALTPEANIIKLPNISASLPQLQAAIKELQSHGYNIPDYPEAPENDAE HHHHHHHHHHHCEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH KEIQLRYAKVLGSAVNPVLREGNSDRRAPLSVKQFAKKHPHKMGAWSNDSQSHVAHMHSG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHEEECC DFYGSEQSLTVQEPTSVRIEFVDGSGSVKVLKEKTALLKGEVIDTAVMNIRSLRQFFADQ CCCCCCCCEEEECCCEEEEEEECCCCCEEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH IADAKASGILLSLHLKATMMKVSDPVMFGHAVTVFYKDVFDKYAALIKELGVNVNNGLGD HCCCCCCCEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE LYVKIKNLPDAQRAEIEADIQAVYATRPALAMVDSDKGITNLHVPNDIIVDASMPVVIRD EEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCEEEECCCCEEEEC SGKMWGPDGKLHDTKAMIPDRCYATMYQAMVEDCKAHGAFDPSTVGSVPNVGLMAQKAEE CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHH YGSHDKTFMAPGNGSVRVVDAAGSVLMEQPVEEGDIFRMCQVKDAPVRDWVKLAVNRAKA HCCCCCEEECCCCCCEEEEECCCHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHC TGVPAVFWLDSNRAHDREIIAKVDEYLKEYDTTGLEICILTPVEAMKFSLERFRAGKDTI CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCEE SVTGNVLRDYLTDLFPIIELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFQKEGYL EHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHCCCE RWDSLGEFSALAASLEYLANAFRNSKAQVLADTLDQAIGKFLDNSKSPARKVGQIDNRGS ECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC HFYLALYWAEALAAQSGDQELQARFAGVAQQLAENEAVINAELIGAQGSPVDMGGYYHPS EEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEECCC DELTSKAMRPSATFNAIIDAM HHHHHHHCCCCCHHHHHHCCC >Mature Secondary Structure GKSSTIIYTKIDEAPALATYSLLPVIQAFAKGTGVDVETRDISLAGRIIANFPDNLTEE CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHCCCCCCCCHH QKISDQLAELGQLALTPEANIIKLPNISASLPQLQAAIKELQSHGYNIPDYPEAPENDAE HHHHHHHHHHHCEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH KEIQLRYAKVLGSAVNPVLREGNSDRRAPLSVKQFAKKHPHKMGAWSNDSQSHVAHMHSG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHEEECC DFYGSEQSLTVQEPTSVRIEFVDGSGSVKVLKEKTALLKGEVIDTAVMNIRSLRQFFADQ CCCCCCCCEEEECCCEEEEEEECCCCCEEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH IADAKASGILLSLHLKATMMKVSDPVMFGHAVTVFYKDVFDKYAALIKELGVNVNNGLGD HCCCCCCCEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE LYVKIKNLPDAQRAEIEADIQAVYATRPALAMVDSDKGITNLHVPNDIIVDASMPVVIRD EEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCEEEECCCCEEEEC SGKMWGPDGKLHDTKAMIPDRCYATMYQAMVEDCKAHGAFDPSTVGSVPNVGLMAQKAEE CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHH YGSHDKTFMAPGNGSVRVVDAAGSVLMEQPVEEGDIFRMCQVKDAPVRDWVKLAVNRAKA HCCCCCEEECCCCCCEEEEECCCHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHC TGVPAVFWLDSNRAHDREIIAKVDEYLKEYDTTGLEICILTPVEAMKFSLERFRAGKDTI CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCEE SVTGNVLRDYLTDLFPIIELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFQKEGYL EHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHCCCE RWDSLGEFSALAASLEYLANAFRNSKAQVLADTLDQAIGKFLDNSKSPARKVGQIDNRGS ECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC HFYLALYWAEALAAQSGDQELQARFAGVAQQLAENEAVINAELIGAQGSPVDMGGYYHPS EEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEECCC DELTSKAMRPSATFNAIIDAM HHHHHHHCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]