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The map label for this gene is traC [H]

Identifier: 119356474

GI number: 119356474

Start: 730830

End: 731660

Strand: Direct

Name: traC [H]

Synonym: Cpha266_0639

Alternate gene names: 119356474

Gene position: 730830-731660 (Clockwise)

Preceding gene: 119356473

Following gene: 119356476

Centisome position: 23.32

GC content: 51.38

Gene sequence:

>831_bases
ATGTCAGTTACTGTCTATGAAATCATCACCGGTCAGATTATTGCCCAGCTTGAAAACGGCGTTGCACCCTGGCGTCAGCC
CTGGAGCGTCGGTTTACCGAAAAACCTGGTTTCAGGGAAGGTTTATCGGGGTATCAACCTCTTTTTACTCTCCACGGCGG
GGTGCGAATATTTCCTGACAAGAAATCAGGCTGAGGAACTGGGCGGTACCATACGCTGCAAGGGGCTCCCGGTTGTTTTC
TGGAAGATACTTGAAAGAGAAAACAAGAAGACCGGCGAGAAGGAGCTTACCCCTTTTATGCGCTATTACAAGGTTTACCC
TGCCAACGGTGTTGAAGGCCTTGATGTACCATCGCCCATCGGAGAGAACAACAGCTCAATCGAAAGAGCTGAGGCAATTA
TCCAGGGAATGCCGAACCGGCCGGTGATCAATTACGGCGGAAACGATGCCTGTTACATCCCGTCCCGTGATGAGGTAAGA
GTACCGGCATTGGAGAACTTTTCAGACAGTGCTGACTTTTATCAAACCACCTATCATGAGTTGGCGCATAGCACTGGACA
CAGCTCACGCCTCAAGAGAGAGGGCGTAACTCAAAACTGGGGATTCGGCTCACACGAGTACTCCGATGAAGAGCTTCTCG
CCGAAATGACCGCTTCGTTCCTCTCCGGAGTGGCCGGTATCGAGCAGAAAACAATGCAGAGCTCGGCGGCCTATCTCAAC
GGCTGGCTCAAGAAAATGAAAGCTGATCCGAAATTCATCATTCAGGTCAGCTCAAGAGCACAGAAGGCGGCTGATTACAT
CCTTGGCCACCATGACGAAGACCCCGGTTGA

Upstream 100 bases:

>100_bases
CAGCCCGGCGTTCAAGTCATGCAGTCAGACCGTCCTCGCTTGTCCCCTGTTGCTGTAGTGCACGTTCGCATTGCATCAAT
CTCTAACCTACGGAGGCGTT

Downstream 100 bases:

>100_bases
TCCGGGGCTTTTGTTTCCAGGTAAGCATGCTACCATGATAGTATGATTGTTTGTTTGCCTGTCATCATGCGGACATTGTC
ACCATGTTATTATGTCCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: Replication primase [H]

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MSVTVYEIITGQIIAQLENGVAPWRQPWSVGLPKNLVSGKVYRGINLFLLSTAGCEYFLTRNQAEELGGTIRCKGLPVVF
WKILERENKKTGEKELTPFMRYYKVYPANGVEGLDVPSPIGENNSSIERAEAIIQGMPNRPVINYGGNDACYIPSRDEVR
VPALENFSDSADFYQTTYHELAHSTGHSSRLKREGVTQNWGFGSHEYSDEELLAEMTASFLSGVAGIEQKTMQSSAAYLN
GWLKKMKADPKFIIQVSSRAQKAADYILGHHDEDPG

Sequences:

>Translated_276_residues
MSVTVYEIITGQIIAQLENGVAPWRQPWSVGLPKNLVSGKVYRGINLFLLSTAGCEYFLTRNQAEELGGTIRCKGLPVVF
WKILERENKKTGEKELTPFMRYYKVYPANGVEGLDVPSPIGENNSSIERAEAIIQGMPNRPVINYGGNDACYIPSRDEVR
VPALENFSDSADFYQTTYHELAHSTGHSSRLKREGVTQNWGFGSHEYSDEELLAEMTASFLSGVAGIEQKTMQSSAAYLN
GWLKKMKADPKFIIQVSSRAQKAADYILGHHDEDPG
>Mature_275_residues
SVTVYEIITGQIIAQLENGVAPWRQPWSVGLPKNLVSGKVYRGINLFLLSTAGCEYFLTRNQAEELGGTIRCKGLPVVFW
KILERENKKTGEKELTPFMRYYKVYPANGVEGLDVPSPIGENNSSIERAEAIIQGMPNRPVINYGGNDACYIPSRDEVRV
PALENFSDSADFYQTTYHELAHSTGHSSRLKREGVTQNWGFGSHEYSDEELLAEMTASFLSGVAGIEQKTMQSSAAYLNG
WLKKMKADPKFIIQVSSRAQKAADYILGHHDEDPG

Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]

COG id: COG4227

COG function: function code L; Antirestriction protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013610
- InterPro:   IPR006171 [H]

Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 30731; Mature: 30600

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTVYEIITGQIIAQLENGVAPWRQPWSVGLPKNLVSGKVYRGINLFLLSTAGCEYFLT
CCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHCCEEEEEEECCCCEEEEE
RNQAEELGGTIRCKGLPVVFWKILERENKKTGEKELTPFMRYYKVYPANGVEGLDVPSPI
CCHHHHCCCEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCC
GENNSSIERAEAIIQGMPNRPVINYGGNDACYIPSRDEVRVPALENFSDSADFYQTTYHE
CCCCCHHHHHHHHHHCCCCCCEEECCCCCEEECCCCCCEECCCCCCCCCCHHHHHHHHHH
LAHSTGHSSRLKREGVTQNWGFGSHEYSDEELLAEMTASFLSGVAGIEQKTMQSSAAYLN
HHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GWLKKMKADPKFIIQVSSRAQKAADYILGHHDEDPG
HHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SVTVYEIITGQIIAQLENGVAPWRQPWSVGLPKNLVSGKVYRGINLFLLSTAGCEYFLT
CEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHCCEEEEEEECCCCEEEEE
RNQAEELGGTIRCKGLPVVFWKILERENKKTGEKELTPFMRYYKVYPANGVEGLDVPSPI
CCHHHHCCCEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCC
GENNSSIERAEAIIQGMPNRPVINYGGNDACYIPSRDEVRVPALENFSDSADFYQTTYHE
CCCCCHHHHHHHHHHCCCCCCEEECCCCCEEECCCCCCEECCCCCCCCCCHHHHHHHHHH
LAHSTGHSSRLKREGVTQNWGFGSHEYSDEELLAEMTASFLSGVAGIEQKTMQSSAAYLN
HHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GWLKKMKADPKFIIQVSSRAQKAADYILGHHDEDPG
HHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1818755 [H]