| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is gpmA
Identifier: 119356462
GI number: 119356462
Start: 704589
End: 705332
Strand: Direct
Name: gpmA
Synonym: Cpha266_0627
Alternate gene names: 119356462
Gene position: 704589-705332 (Clockwise)
Preceding gene: 119356459
Following gene: 119356463
Centisome position: 22.48
GC content: 48.79
Gene sequence:
>744_bases ATGATCAAGCTGGTCTTGTTGCGACATGGGGAAAGTCAGTGGAACAGGGAAAACCGATTTACAGGATGGCATGATATTGA TTTGACTGAAAATGGCCGAAACGAGGCTTTTCAGGCTGGTCGACTCATGAAAGAAGCCGGACTGGTTTTCGATATGGCAT ATACCTCCGTTTTGAAAAGAGCAATCAGGACGCTCTGGAACGCCATGGATTCCATGGACCTCATGTGGATTTCTGTGTTC AAGAGCTGGCGTCTCAACGAACGCCATTATGGTGCTCTTCAGGGGCTCAACAAGTCGGAAACTTCCCGGAAATACGGCGA GGAGCAGGTGCTTGTATGGCGAAGAAGCTATGATACGCCTCCGCCGCTGCTCGAAAAGAGTGACGCTCGTTATCCCGGAA CCGATCCGCGTTATGGAGACCTCTCTGAAGCGGAAATCCCTCTAAGCGAATGTCTCAAGGATACCGTTGAGCGTTTTCTT CCGATCTGGCATGAAACCATAGCTCCGCAACTGCGCAAGGGCAAGCGTGTCATTATTGTCGCACACGGCAACTCATTACG TGCTTTAGTGAAATATCTTGATAATATTTCCGAAGAAGATATTGTCGGCTTGAATATCCCGACAGGCATTCCGCTTGTAT ACGAGCTCGATGATGATCTCAAGCCCTTGAAAAACTATTACCTTGGGGATCAGGAAGCCTTGAAAAAAGCTGTCGATGCC GTTGCCGGACAGTCAAAAGCGTAG
Upstream 100 bases:
>100_bases GAACGTTTGAGAAAAGTTCTTCAGAATATTAAATTACGAGCCAAATAAAAAAGGGAGAGATCCTTCCTGTTATGAAAAAT ATCCGGAAAAAGGGGGAGTT
Downstream 100 bases:
>100_bases TCCCGGATATTTTTGCAACGTATGGATATAATGTAAAAACCTTATATTCTGCACTCTTGATGACGGGACGACCTTTTTTT TGAAACTTTTAGAAAAGATG
Product: phosphoglyceromutase
Products: NA
Alternate protein names: BPG-dependent PGAM; PGAM; Phosphoglyceromutase; dPGM
Number of amino acids: Translated: 247; Mature: 247
Protein sequence:
>247_residues MIKLVLLRHGESQWNRENRFTGWHDIDLTENGRNEAFQAGRLMKEAGLVFDMAYTSVLKRAIRTLWNAMDSMDLMWISVF KSWRLNERHYGALQGLNKSETSRKYGEEQVLVWRRSYDTPPPLLEKSDARYPGTDPRYGDLSEAEIPLSECLKDTVERFL PIWHETIAPQLRKGKRVIIVAHGNSLRALVKYLDNISEEDIVGLNIPTGIPLVYELDDDLKPLKNYYLGDQEALKKAVDA VAGQSKA
Sequences:
>Translated_247_residues MIKLVLLRHGESQWNRENRFTGWHDIDLTENGRNEAFQAGRLMKEAGLVFDMAYTSVLKRAIRTLWNAMDSMDLMWISVF KSWRLNERHYGALQGLNKSETSRKYGEEQVLVWRRSYDTPPPLLEKSDARYPGTDPRYGDLSEAEIPLSECLKDTVERFL PIWHETIAPQLRKGKRVIIVAHGNSLRALVKYLDNISEEDIVGLNIPTGIPLVYELDDDLKPLKNYYLGDQEALKKAVDA VAGQSKA >Mature_247_residues MIKLVLLRHGESQWNRENRFTGWHDIDLTENGRNEAFQAGRLMKEAGLVFDMAYTSVLKRAIRTLWNAMDSMDLMWISVF KSWRLNERHYGALQGLNKSETSRKYGEEQVLVWRRSYDTPPPLLEKSDARYPGTDPRYGDLSEAEIPLSECLKDTVERFL PIWHETIAPQLRKGKRVIIVAHGNSLRALVKYLDNISEEDIVGLNIPTGIPLVYELDDDLKPLKNYYLGDQEALKKAVDA VAGQSKA
Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
COG id: COG0588
COG function: function code G; Phosphoglycerate mutase 1
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily
Homologues:
Organism=Homo sapiens, GI50593010, Length=248, Percent_Identity=54.8387096774194, Blast_Score=294, Evalue=5e-80, Organism=Homo sapiens, GI4505753, Length=248, Percent_Identity=57.6612903225806, Blast_Score=294, Evalue=6e-80, Organism=Homo sapiens, GI71274132, Length=248, Percent_Identity=55.241935483871, Blast_Score=279, Evalue=2e-75, Organism=Homo sapiens, GI4502445, Length=250, Percent_Identity=47.2, Blast_Score=241, Evalue=4e-64, Organism=Homo sapiens, GI40353764, Length=250, Percent_Identity=47.2, Blast_Score=241, Evalue=4e-64, Organism=Homo sapiens, GI310129614, Length=161, Percent_Identity=56.5217391304348, Blast_Score=184, Evalue=4e-47, Organism=Escherichia coli, GI1786970, Length=247, Percent_Identity=64.3724696356275, Blast_Score=337, Evalue=5e-94, Organism=Saccharomyces cerevisiae, GI6322697, Length=246, Percent_Identity=51.219512195122, Blast_Score=240, Evalue=2e-64, Organism=Saccharomyces cerevisiae, GI6324516, Length=281, Percent_Identity=32.3843416370107, Blast_Score=137, Evalue=2e-33, Organism=Saccharomyces cerevisiae, GI6320183, Length=299, Percent_Identity=32.1070234113712, Blast_Score=130, Evalue=2e-31, Organism=Drosophila melanogaster, GI24646216, Length=249, Percent_Identity=55.421686746988, Blast_Score=282, Evalue=1e-76, Organism=Drosophila melanogaster, GI85725270, Length=249, Percent_Identity=54.2168674698795, Blast_Score=270, Evalue=6e-73, Organism=Drosophila melanogaster, GI85725272, Length=249, Percent_Identity=54.2168674698795, Blast_Score=270, Evalue=6e-73, Organism=Drosophila melanogaster, GI24650981, Length=249, Percent_Identity=54.2168674698795, Blast_Score=270, Evalue=6e-73, Organism=Drosophila melanogaster, GI28571815, Length=246, Percent_Identity=40.650406504065, Blast_Score=183, Evalue=1e-46, Organism=Drosophila melanogaster, GI28571817, Length=246, Percent_Identity=40.650406504065, Blast_Score=183, Evalue=1e-46, Organism=Drosophila melanogaster, GI24648979, Length=246, Percent_Identity=40.650406504065, Blast_Score=182, Evalue=1e-46,
Paralogues:
None
Copy number: 960 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): GPMA_CHLPD (A1BE55)
Other databases:
- EMBL: CP000492 - RefSeq: YP_911106.1 - ProteinModelPortal: A1BE55 - SMR: A1BE55 - STRING: A1BE55 - GeneID: 4569780 - GenomeReviews: CP000492_GR - KEGG: cph:Cpha266_0627 - NMPDR: fig|290317.7.peg.660 - eggNOG: COG0588 - HOGENOM: HBG658938 - OMA: TGWKDPD - ProtClustDB: PRK14115 - GO: GO:0006096 - HAMAP: MF_01039 - InterPro: IPR013078 - InterPro: IPR001345 - InterPro: IPR005952 - PANTHER: PTHR11931 - SMART: SM00855 - TIGRFAMs: TIGR01258
Pfam domain/function: PF00300 PGAM
EC number: =5.4.2.1
Molecular weight: Translated: 28363; Mature: 28363
Theoretical pI: Translated: 6.69; Mature: 6.69
Prosite motif: PS00175 PG_MUTASE
Important sites: ACT_SITE 9-9 ACT_SITE 182-182
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKLVLLRHGESQWNRENRFTGWHDIDLTENGRNEAFQAGRLMKEAGLVFDMAYTSVLKR CEEEEEEECCCHHHCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHH AIRTLWNAMDSMDLMWISVFKSWRLNERHYGALQGLNKSETSRKYGEEQVLVWRRSYDTP HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHCCCHHEEEEECCCCCC PPLLEKSDARYPGTDPRYGDLSEAEIPLSECLKDTVERFLPIWHETIAPQLRKGKRVIIV CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE AHGNSLRALVKYLDNISEEDIVGLNIPTGIPLVYELDDDLKPLKNYYLGDQEALKKAVDA ECCCHHHHHHHHHHCCCCCCEEEEECCCCCCEEEECCCHHHHHHHHCCCCHHHHHHHHHH VAGQSKA HCCCCCC >Mature Secondary Structure MIKLVLLRHGESQWNRENRFTGWHDIDLTENGRNEAFQAGRLMKEAGLVFDMAYTSVLKR CEEEEEEECCCHHHCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHH AIRTLWNAMDSMDLMWISVFKSWRLNERHYGALQGLNKSETSRKYGEEQVLVWRRSYDTP HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHCCCHHEEEEECCCCCC PPLLEKSDARYPGTDPRYGDLSEAEIPLSECLKDTVERFLPIWHETIAPQLRKGKRVIIV CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE AHGNSLRALVKYLDNISEEDIVGLNIPTGIPLVYELDDDLKPLKNYYLGDQEALKKAVDA ECCCHHHHHHHHHHCCCCCCEEEEECCCCCCEEEECCCHHHHHHHHCCCCHHHHHHHHHH VAGQSKA HCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA