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The map label for this gene is psd

Identifier: 119356414

GI number: 119356414

Start: 649572

End: 650210

Strand: Reverse

Name: psd

Synonym: Cpha266_0578

Alternate gene names: 119356414

Gene position: 650210-649572 (Counterclockwise)

Preceding gene: 119356416

Following gene: 119356413

Centisome position: 20.75

GC content: 48.98

Gene sequence:

>639_bases
ATGCCAACTTCATACGGTTACACGACACTCCTGAAAACCACCCTGGTATGCTGTTTGCTGACTGCGCTGGTGTCGATTTT
TCTTCCTGCATTGCTGCCATTAACAGCCACAGGTTCTGCCGCCGTTATCATCTTCACGCTTTACTTTTTTCGTGATCCTG
AACGCCGGATACCCCTTGATCAGCAGGTCATTGTAGCTCCGGCTGACGGAAAAATCCTCCTGATACAGCCTCTTGACCAC
GCATTCACCGGTAATGACTCAACGCTGGTCAGTATTTTCATGTCGCCCTTCAATGTTCACGTCAATCGAATTCCTCTGGA
CGGAACCATTGTACACCTGCGCTATGTTCCGGGAAAATTCCTCATGGCATTCGATAACAGGAGTATGGAGAGTAATGAAA
AAATGGAGATCGGCATCGACAATGGAAGCCTCAGGGTTCTTTTCATCCAGGTAGCCGGATTTCTGGCACGAAGAATTGTC
TGCCCTTTACACAGAAACGAGAGTGTGCTATCGGGAAAACGGTTCGGAATGATCAAATTCGGCTCGCGTGTCGACATGAT
CCTGCCGGCTGCGGTCAAGATTATGGTTCAATCCGGCCAGAAAACCTGCGCAGGAGAAACCATAATTGGCCGCTATTAG

Upstream 100 bases:

>100_bases
CATGCCAGTTAACCTGTTTGACGTTGCACACCTGCACAATAAAATGTATTATTTAGTCCAAAGGTAATAAACGCGCTGGA
TATGAGCACTAAAAAGAGGT

Downstream 100 bases:

>100_bases
CAAAAAGTAAAACGGATTTTCATCTGATATTTTTTGGTTTGGCATCTTGTAATAGTTATATAAATAGCAAGGAATATACT
TTTCAATCTTAAACCTCCCG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MPTSYGYTTLLKTTLVCCLLTALVSIFLPALLPLTATGSAAVIIFTLYFFRDPERRIPLDQQVIVAPADGKILLIQPLDH
AFTGNDSTLVSIFMSPFNVHVNRIPLDGTIVHLRYVPGKFLMAFDNRSMESNEKMEIGIDNGSLRVLFIQVAGFLARRIV
CPLHRNESVLSGKRFGMIKFGSRVDMILPAAVKIMVQSGQKTCAGETIIGRY

Sequences:

>Translated_212_residues
MPTSYGYTTLLKTTLVCCLLTALVSIFLPALLPLTATGSAAVIIFTLYFFRDPERRIPLDQQVIVAPADGKILLIQPLDH
AFTGNDSTLVSIFMSPFNVHVNRIPLDGTIVHLRYVPGKFLMAFDNRSMESNEKMEIGIDNGSLRVLFIQVAGFLARRIV
CPLHRNESVLSGKRFGMIKFGSRVDMILPAAVKIMVQSGQKTCAGETIIGRY
>Mature_211_residues
PTSYGYTTLLKTTLVCCLLTALVSIFLPALLPLTATGSAAVIIFTLYFFRDPERRIPLDQQVIVAPADGKILLIQPLDHA
FTGNDSTLVSIFMSPFNVHVNRIPLDGTIVHLRYVPGKFLMAFDNRSMESNEKMEIGIDNGSLRVLFIQVAGFLARRIVC
PLHRNESVLSGKRFGMIKFGSRVDMILPAAVKIMVQSGQKTCAGETIIGRY

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_CHLPD (A1BE07)

Other databases:

- EMBL:   CP000492
- RefSeq:   YP_911058.1
- STRING:   A1BE07
- GeneID:   4569173
- GenomeReviews:   CP000492_GR
- KEGG:   cph:Cpha266_0578
- NMPDR:   fig|290317.7.peg.606
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 23420; Mature: 23289

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTSYGYTTLLKTTLVCCLLTALVSIFLPALLPLTATGSAAVIIFTLYFFRDPERRIPLD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEEEHHCCCCCCCCCC
QQVIVAPADGKILLIQPLDHAFTGNDSTLVSIFMSPFNVHVNRIPLDGTIVHLRYVPGKF
CEEEEEECCCCEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEECCCEE
LMAFDNRSMESNEKMEIGIDNGSLRVLFIQVAGFLARRIVCPLHRNESVLSGKRFGMIKF
EEEECCCCCCCCCCEEEEECCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEE
GSRVDMILPAAVKIMVQSGQKTCAGETIIGRY
CCCCCCHHHHHHHHHHHCCCCCCCCCEEECCC
>Mature Secondary Structure 
PTSYGYTTLLKTTLVCCLLTALVSIFLPALLPLTATGSAAVIIFTLYFFRDPERRIPLD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEEEHHCCCCCCCCCC
QQVIVAPADGKILLIQPLDHAFTGNDSTLVSIFMSPFNVHVNRIPLDGTIVHLRYVPGKF
CEEEEEECCCCEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEECCCEE
LMAFDNRSMESNEKMEIGIDNGSLRVLFIQVAGFLARRIVCPLHRNESVLSGKRFGMIKF
EEEECCCCCCCCCCEEEEECCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEE
GSRVDMILPAAVKIMVQSGQKTCAGETIIGRY
CCCCCCHHHHHHHHHHHCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA