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The map label for this gene is scpB [H]

Identifier: 119356330

GI number: 119356330

Start: 540334

End: 540942

Strand: Direct

Name: scpB [H]

Synonym: Cpha266_0493

Alternate gene names: 119356330

Gene position: 540334-540942 (Clockwise)

Preceding gene: 119356329

Following gene: 119356331

Centisome position: 17.24

GC content: 48.93

Gene sequence:

>609_bases
ATGGCGCCCGAAGAGGATATCGTGCTGAAACAGCAGGTTGAGGCTCTTGTTTTTGCTTCTGAAGAAGCAGTAACCCTCTC
GACGATAAGGCATATTATCGGCTGTTCGCTCGGTTTGGCAGGGCTTGATGCTATTGTGGAGCAGCTTAACAGCGAGTACG
CATCTTCTGGCAGGAGCTTTCGGATTCGCAAGATAGCCGGAGGCTATCGCTTTTTCAGCGAATCCGAATTCGATGCCCTT
CTGAAAAAACTCATGGCACCGAAAATCCGGAAGCGGGTTTCTCAGTCCATGCTTGAAGTGCTGGCGGTTATCGCCTATCA
GCAGCCGGTTACAAAAGCAGAGATTCTCCAGGTGCGCGGTGTCAGTCCTGATTATTCCCTCGATCGTCTGCTTGAGAGGG
GTTTTATTGAGGTGCGAGGGCGTGCTGATTCCCCCGGAAAACCGCTTCAATACGGGACGACAAAAGAGTTTTTGGATCTG
TTCAGTCTTTTTTCACTTCGTGATTTACCAAAACTTCGTGAAATAGAGGAGATTATACAGGAAAATGAGGAGCAGGAGTA
TCTTGCTTCGAGGGGTGGCGATAAAGATTATAACGGCAGGAACGATTGA

Upstream 100 bases:

>100_bases
AGGATATCTGTATTGATCATAACTTTTCCACAGCAAGGAAGAAGTGATGCTGTGATCGGGGCAGAACGGGATCTCCCTCA
TTCAACCATCCTGACTAACT

Downstream 100 bases:

>100_bases
AGGAGATCGGAGAAGATGAAAGAAACGGAAGATGAGGGCGGGATACGAATCAACAGGTATCTTGCCATGTGCGGTATAGC
TTCAAGACGGGCGGCCGACA

Product: condensin subunit ScpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MAPEEDIVLKQQVEALVFASEEAVTLSTIRHIIGCSLGLAGLDAIVEQLNSEYASSGRSFRIRKIAGGYRFFSESEFDAL
LKKLMAPKIRKRVSQSMLEVLAVIAYQQPVTKAEILQVRGVSPDYSLDRLLERGFIEVRGRADSPGKPLQYGTTKEFLDL
FSLFSLRDLPKLREIEEIIQENEEQEYLASRGGDKDYNGRND

Sequences:

>Translated_202_residues
MAPEEDIVLKQQVEALVFASEEAVTLSTIRHIIGCSLGLAGLDAIVEQLNSEYASSGRSFRIRKIAGGYRFFSESEFDAL
LKKLMAPKIRKRVSQSMLEVLAVIAYQQPVTKAEILQVRGVSPDYSLDRLLERGFIEVRGRADSPGKPLQYGTTKEFLDL
FSLFSLRDLPKLREIEEIIQENEEQEYLASRGGDKDYNGRND
>Mature_201_residues
APEEDIVLKQQVEALVFASEEAVTLSTIRHIIGCSLGLAGLDAIVEQLNSEYASSGRSFRIRKIAGGYRFFSESEFDALL
KKLMAPKIRKRVSQSMLEVLAVIAYQQPVTKAEILQVRGVSPDYSLDRLLERGFIEVRGRADSPGKPLQYGTTKEFLDLF
SLFSLRDLPKLREIEEIIQENEEQEYLASRGGDKDYNGRND

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 22763; Mature: 22632

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPEEDIVLKQQVEALVFASEEAVTLSTIRHIIGCSLGLAGLDAIVEQLNSEYASSGRSF
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCE
RIRKIAGGYRFFSESEFDALLKKLMAPKIRKRVSQSMLEVLAVIAYQQPVTKAEILQVRG
EEHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
VSPDYSLDRLLERGFIEVRGRADSPGKPLQYGTTKEFLDLFSLFSLRDLPKLREIEEIIQ
CCCCHHHHHHHHCCHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
ENEEQEYLASRGGDKDYNGRND
CCCHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
APEEDIVLKQQVEALVFASEEAVTLSTIRHIIGCSLGLAGLDAIVEQLNSEYASSGRSF
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCE
RIRKIAGGYRFFSESEFDALLKKLMAPKIRKRVSQSMLEVLAVIAYQQPVTKAEILQVRG
EEHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
VSPDYSLDRLLERGFIEVRGRADSPGKPLQYGTTKEFLDLFSLFSLRDLPKLREIEEIIQ
CCCCHHHHHHHHCCHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
ENEEQEYLASRGGDKDYNGRND
CCCHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA