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The map label for this gene is ykfC [C]

Identifier: 119356297

GI number: 119356297

Start: 507049

End: 508080

Strand: Direct

Name: ykfC [C]

Synonym: Cpha266_0459

Alternate gene names: 119356297

Gene position: 507049-508080 (Clockwise)

Preceding gene: 119356296

Following gene: 119356298

Centisome position: 16.18

GC content: 46.41

Gene sequence:

>1032_bases
GTGAAAACCGAAAAAAACCTGTTCGAATCTGTCACAGCCTTCGAAAATGTGCTTTCGGCAGCCCGAAATGCAGCAAAAGG
GAAGCGTGAAACCAGATCGGTTCTTCTTTTTTATGCGCAACTTGAAGACAATCTCTGGCAGATTATCGCCGAGCTGAAAA
GCAAAACCTGGCAGCCTGGTTCATTCAAGAGTTTCAGCATCTATAAACCAAAACCGAGGCTTATCAGCGCTGCGCCATTC
AGGGACAGGGTTGTTCATCATGCCCTTATCAATGTGGTTGGCCCGTTACTTGAGCAAACCTTCATTCATGATACCTATGC
CAACAGGATGGGCAAAGGTACCCATAAGGCCATACGAAGGTATCAGCATTTCCTGTGCCGGTTTGACTACGCACTGAAAT
GCGATATAAAAAAATACTTTCCGTCTGTTGACCATGAAATTCTCAAAACATCACTCCGAAGAAGGGTTGCCTGCAACGAT
ACGCTCTGGCTTATCGATACTATCATCGATAACAGTAACAGCCAGGACGATCATCTTCACTATTTTCAGGGTGACGATCT
TTTCACCCCTGTTGAGAGAAGAAAGGGTCTGCCGATCGGCAATCTGACCAGTCAGTTTTTTGCAAATTATTATCTGAATT
TTCTGGATCATTTTGTGAAAGAACGGCTGCATTGCAAGGGATATGTGCGGTATGTGGATGATTTTGTGCTGTTTTCCGAT
TCCAGGGCTGAGCTGTGGCGATGGAAAGAGGAGATCGAAAGGTATCTTGAGGAGTTCAGACTGGTGCTCAATGCGCAAAG
AACAGAGCTTTTTCCAACCACCGAAGGTCGGTGCTTTCTTGGCCAAAAGGTCTTTCAGTCCTACAGGTTGCTGCCGGCAG
AAAATGTTCGCAGAGCGAAAAAAAGAGTTCAGGCGAGTGACGTGGCTAATCCTGCCGCCATGAAAAAAATGCATTCCGGG
TGGATTGGTCATGCCCGACAGGCAAATACCGGTAATCTGTTGCACGCAATGGGCCTCGACAAACATCGATAA

Upstream 100 bases:

>100_bases
CACAGGGTTGTTCATTGTGGCTCTGTGCACAAACAGATCACCTGAACAGGCGGCTTGAGTAAGTACCTGAAAGAGCTGCC
TGTTTTTTTGTTTCGGATAC

Downstream 100 bases:

>100_bases
AGCAGAAAGATTGAACCCTGTTCCATTTGTTATTATGATGTATGCACGTTTTTTCATGACTTTCCTTGTTGCGCTCTGCA
TGGCTGCGAATACGGCAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: Reverse Transcriptase; Retron-Type Reverse Transcriptase; Reverse Transcriptase Family Protein; Reverse Transcriptase/Maturase; Reverse Transcriptase/Maturase Family Protein; Group II Intron-Encoding Maturase; Group II Intron Maturase; Group II Intron-Encoded Protein LtrA; CRISPR-Associated Protein; Maturase; Reverse Transcriptase Fragment; Recombinase; Integron/Retron-Type RNA-Directed DNA Polymerase; Group II Intron-Encoded Protein; RNA-Directed DNA Polymerase Retrotranscriptase; GBSi1 Group II Intron Maturase; Phage-Encoded Reverse Transcriptase; Reverse Transcriptasematurase Protein; Group II Intron Reverse Transcriptase/Maturase; Regulatory Protein GntR; Retron-Type Reverse Transcriptase-Like Protein; Ecombinase For Bh.Int

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MKTEKNLFESVTAFENVLSAARNAAKGKRETRSVLLFYAQLEDNLWQIIAELKSKTWQPGSFKSFSIYKPKPRLISAAPF
RDRVVHHALINVVGPLLEQTFIHDTYANRMGKGTHKAIRRYQHFLCRFDYALKCDIKKYFPSVDHEILKTSLRRRVACND
TLWLIDTIIDNSNSQDDHLHYFQGDDLFTPVERRKGLPIGNLTSQFFANYYLNFLDHFVKERLHCKGYVRYVDDFVLFSD
SRAELWRWKEEIERYLEEFRLVLNAQRTELFPTTEGRCFLGQKVFQSYRLLPAENVRRAKKRVQASDVANPAAMKKMHSG
WIGHARQANTGNLLHAMGLDKHR

Sequences:

>Translated_343_residues
MKTEKNLFESVTAFENVLSAARNAAKGKRETRSVLLFYAQLEDNLWQIIAELKSKTWQPGSFKSFSIYKPKPRLISAAPF
RDRVVHHALINVVGPLLEQTFIHDTYANRMGKGTHKAIRRYQHFLCRFDYALKCDIKKYFPSVDHEILKTSLRRRVACND
TLWLIDTIIDNSNSQDDHLHYFQGDDLFTPVERRKGLPIGNLTSQFFANYYLNFLDHFVKERLHCKGYVRYVDDFVLFSD
SRAELWRWKEEIERYLEEFRLVLNAQRTELFPTTEGRCFLGQKVFQSYRLLPAENVRRAKKRVQASDVANPAAMKKMHSG
WIGHARQANTGNLLHAMGLDKHR
>Mature_343_residues
MKTEKNLFESVTAFENVLSAARNAAKGKRETRSVLLFYAQLEDNLWQIIAELKSKTWQPGSFKSFSIYKPKPRLISAAPF
RDRVVHHALINVVGPLLEQTFIHDTYANRMGKGTHKAIRRYQHFLCRFDYALKCDIKKYFPSVDHEILKTSLRRRVACND
TLWLIDTIIDNSNSQDDHLHYFQGDDLFTPVERRKGLPIGNLTSQFFANYYLNFLDHFVKERLHCKGYVRYVDDFVLFSD
SRAELWRWKEEIERYLEEFRLVLNAQRTELFPTTEGRCFLGQKVFQSYRLLPAENVRRAKKRVQASDVANPAAMKKMHSG
WIGHARQANTGNLLHAMGLDKHR

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40178; Mature: 40178

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTEKNLFESVTAFENVLSAARNAAKGKRETRSVLLFYAQLEDNLWQIIAELKSKTWQPG
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SFKSFSIYKPKPRLISAAPFRDRVVHHALINVVGPLLEQTFIHDTYANRMGKGTHKAIRR
CCCCEEEECCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
YQHFLCRFDYALKCDIKKYFPSVDHEILKTSLRRRVACNDTLWLIDTIIDNSNSQDDHLH
HHHHHHHCCHHHEECHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEE
YFQGDDLFTPVERRKGLPIGNLTSQFFANYYLNFLDHFVKERLHCKGYVRYVDDFVLFSD
EECCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SRAELWRWKEEIERYLEEFRLVLNAQRTELFPTTEGRCFLGQKVFQSYRLLPAENVRRAK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHH
KRVQASDVANPAAMKKMHSGWIGHARQANTGNLLHAMGLDKHR
HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEHHCCCCCCC
>Mature Secondary Structure
MKTEKNLFESVTAFENVLSAARNAAKGKRETRSVLLFYAQLEDNLWQIIAELKSKTWQPG
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SFKSFSIYKPKPRLISAAPFRDRVVHHALINVVGPLLEQTFIHDTYANRMGKGTHKAIRR
CCCCEEEECCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
YQHFLCRFDYALKCDIKKYFPSVDHEILKTSLRRRVACNDTLWLIDTIIDNSNSQDDHLH
HHHHHHHCCHHHEECHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEE
YFQGDDLFTPVERRKGLPIGNLTSQFFANYYLNFLDHFVKERLHCKGYVRYVDDFVLFSD
EECCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SRAELWRWKEEIERYLEEFRLVLNAQRTELFPTTEGRCFLGQKVFQSYRLLPAENVRRAK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHH
KRVQASDVANPAAMKKMHSGWIGHARQANTGNLLHAMGLDKHR
HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA