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The map label for this gene is rfaQ [H]

Identifier: 119356199

GI number: 119356199

Start: 402684

End: 403793

Strand: Reverse

Name: rfaQ [H]

Synonym: Cpha266_0360

Alternate gene names: 119356199

Gene position: 403793-402684 (Counterclockwise)

Preceding gene: 119356217

Following gene: 119356198

Centisome position: 12.88

GC content: 46.58

Gene sequence:

>1110_bases
ATGAAGATCCCTTTTATGAACTCCTCCCGAACATTGGGCAAGAAAAATAAACTGTTCAGAAAGCTCTTTACCAGAACACT
GCAACTGATCGTTCATAAAAGGGAACCGCTACGGCAATTTACCGGACCACTCAATTCCATTGTCATACTCGCTCAGGAAA
AAATCGGAGACTCGATTCTGCTCACGCCGCTACTGAGCAATCTCCGCCACTATTTTCCCGATCTTGAAATTCACCTCATC
TGCTTCAGCGAAGCATCCGTAAATTTTTTCAGAAACGATCCTCATATAACCGCCATTCACTCGGTAAAAAAAAATATTGT
ACGTTATTACAAGGATGTCCTTTCCAGAGAGTTTGATCTTCTGTTCAACACAAAGGACAGTCCGTCAACAAACTTTTTGA
TACAAACCCTTCTTATTCGCGCCCGTTTCAAGGCAGGGCATGCCCATCCTTATCATGAGGGGATATTCAACCACCTTATA
ACGATTGAGTATCATACCCGAATGGCTGTTAAAAACTGCTCAATCCTCCCCTTGCTATCGATACGCGTCGAAGAAAAAAA
GTACAGACCATATCTGCCTCCGGCGCCTGTTTCGAGTGCCATAAAACGGTTTTCGGAAAAAATCAATAACGACGTTCTGA
CAGGACTTAACATCAGCGCAGGCGGCCCCTTGCGATGCTGGACGGAAGCAAAATGGAGTGCTCTCATTAAAGGTTTTCCG
GATATGCAGTTCGTGATATTTTCAGCTCCGGGTGACACTCATATCAAACTGCGACTTGAACAACATGATAACGTCACCGT
CTCCCCCCCGACAGCCAACATCTACGAAGTAGGGCTACTCGTCAAGCATCTTCGATTGCTTGTCACTCCCGATACCTCTC
TGGTTCACGTCGCCTCGTGCTACAACATTCCGGTGATCGGCCTGTACACCTCTGCGCCCCAGGACTTGTCGAGATTCGGC
CCTTATCTCGTTGACTTCGAAATCATCACCTCCAGCACTTCACAGGTCAGCGACATTGAGGTGGAAGCTGTCACCTCGGT
CATGCAAAACAAATTGCAGCAACAATTGGACATGACGGCTGACAGAACAACCGGCAACAACAGACAATAA

Upstream 100 bases:

>100_bases
TCCCGATAGCGTTATCGAGGAAAACAGAAAACTTGTTGCAGGATAATTCCATTGAGAAAATAAGGTTATTCTCGTAAGTT
CCCTTTTAATAAAACTCTTT

Downstream 100 bases:

>100_bases
AAACAGAATATCACTGAATAATTATTTTACAGCAGTCACAAATTTCCCGAAACACCATGAACATTCTCTTTGTGAATTCC
ATCGGTCGCGACAAATTCGG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MKIPFMNSSRTLGKKNKLFRKLFTRTLQLIVHKREPLRQFTGPLNSIVILAQEKIGDSILLTPLLSNLRHYFPDLEIHLI
CFSEASVNFFRNDPHITAIHSVKKNIVRYYKDVLSREFDLLFNTKDSPSTNFLIQTLLIRARFKAGHAHPYHEGIFNHLI
TIEYHTRMAVKNCSILPLLSIRVEEKKYRPYLPPAPVSSAIKRFSEKINNDVLTGLNISAGGPLRCWTEAKWSALIKGFP
DMQFVIFSAPGDTHIKLRLEQHDNVTVSPPTANIYEVGLLVKHLRLLVTPDTSLVHVASCYNIPVIGLYTSAPQDLSRFG
PYLVDFEIITSSTSQVSDIEVEAVTSVMQNKLQQQLDMTADRTTGNNRQ

Sequences:

>Translated_369_residues
MKIPFMNSSRTLGKKNKLFRKLFTRTLQLIVHKREPLRQFTGPLNSIVILAQEKIGDSILLTPLLSNLRHYFPDLEIHLI
CFSEASVNFFRNDPHITAIHSVKKNIVRYYKDVLSREFDLLFNTKDSPSTNFLIQTLLIRARFKAGHAHPYHEGIFNHLI
TIEYHTRMAVKNCSILPLLSIRVEEKKYRPYLPPAPVSSAIKRFSEKINNDVLTGLNISAGGPLRCWTEAKWSALIKGFP
DMQFVIFSAPGDTHIKLRLEQHDNVTVSPPTANIYEVGLLVKHLRLLVTPDTSLVHVASCYNIPVIGLYTSAPQDLSRFG
PYLVDFEIITSSTSQVSDIEVEAVTSVMQNKLQQQLDMTADRTTGNNRQ
>Mature_369_residues
MKIPFMNSSRTLGKKNKLFRKLFTRTLQLIVHKREPLRQFTGPLNSIVILAQEKIGDSILLTPLLSNLRHYFPDLEIHLI
CFSEASVNFFRNDPHITAIHSVKKNIVRYYKDVLSREFDLLFNTKDSPSTNFLIQTLLIRARFKAGHAHPYHEGIFNHLI
TIEYHTRMAVKNCSILPLLSIRVEEKKYRPYLPPAPVSSAIKRFSEKINNDVLTGLNISAGGPLRCWTEAKWSALIKGFP
DMQFVIFSAPGDTHIKLRLEQHDNVTVSPPTANIYEVGLLVKHLRLLVTPDTSLVHVASCYNIPVIGLYTSAPQDLSRFG
PYLVDFEIITSSTSQVSDIEVEAVTSVMQNKLQQQLDMTADRTTGNNRQ

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=281, Percent_Identity=22.4199288256228, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 41964; Mature: 41964

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIPFMNSSRTLGKKNKLFRKLFTRTLQLIVHKREPLRQFTGPLNSIVILAQEKIGDSIL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEEHHHCCCCEE
LTPLLSNLRHYFPDLEIHLICFSEASVNFFRNDPHITAIHSVKKNIVRYYKDVLSREFDL
HHHHHHHHHHHCCCCEEEEEEEECCCCEEECCCCCEEHHHHHHHHHHHHHHHHHCCCEEE
LFNTKDSPSTNFLIQTLLIRARFKAGHAHPYHEGIFNHLITIEYHTRMAVKNCSILPLLS
EEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCEEEEEEEEEEHHCCCCEEEEEE
IRVEEKKYRPYLPPAPVSSAIKRFSEKINNDVLTGLNISAGGPLRCWTEAKWSALIKGFP
EEEEHHHCCCCCCCCCHHHHHHHHHHHHCCCEEECEEECCCCCEEEECHHHHHHHHCCCC
DMQFVIFSAPGDTHIKLRLEQHDNVTVSPPTANIYEVGLLVKHLRLLVTPDTSLVHVASC
CCEEEEEECCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHHHHHEEECCCCCEEEEEEC
YNIPVIGLYTSAPQDLSRFGPYLVDFEIITSSTSQVSDIEVEAVTSVMQNKLQQQLDMTA
CCCCEEEEECCCCHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
DRTTGNNRQ
CCCCCCCCC
>Mature Secondary Structure
MKIPFMNSSRTLGKKNKLFRKLFTRTLQLIVHKREPLRQFTGPLNSIVILAQEKIGDSIL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEEHHHCCCCEE
LTPLLSNLRHYFPDLEIHLICFSEASVNFFRNDPHITAIHSVKKNIVRYYKDVLSREFDL
HHHHHHHHHHHCCCCEEEEEEEECCCCEEECCCCCEEHHHHHHHHHHHHHHHHHCCCEEE
LFNTKDSPSTNFLIQTLLIRARFKAGHAHPYHEGIFNHLITIEYHTRMAVKNCSILPLLS
EEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCEEEEEEEEEEHHCCCCEEEEEE
IRVEEKKYRPYLPPAPVSSAIKRFSEKINNDVLTGLNISAGGPLRCWTEAKWSALIKGFP
EEEEHHHCCCCCCCCCHHHHHHHHHHHHCCCEEECEEECCCCCEEEECHHHHHHHHCCCC
DMQFVIFSAPGDTHIKLRLEQHDNVTVSPPTANIYEVGLLVKHLRLLVTPDTSLVHVASC
CCEEEEEECCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHHHHHEEECCCCCEEEEEEC
YNIPVIGLYTSAPQDLSRFGPYLVDFEIITSSTSQVSDIEVEAVTSVMQNKLQQQLDMTA
CCCCEEEEECCCCHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
DRTTGNNRQ
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA