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The map label for this gene is rfbU [H]

Identifier: 119356196

GI number: 119356196

Start: 399139

End: 400308

Strand: Reverse

Name: rfbU [H]

Synonym: Cpha266_0357

Alternate gene names: 119356196

Gene position: 400308-399139 (Counterclockwise)

Preceding gene: 119356197

Following gene: 119356195

Centisome position: 12.77

GC content: 49.15

Gene sequence:

>1170_bases
ATGGCTCTTCGAAATCAATCGAAGCAGCTTCATCAGAAAAGTAATGCGCTGAATAACAGGAAAAAAAGCACCATGAACAT
CACCTATGATGTTGTAAAAACAGCGGGATACAGCGGCAATCTCACCTATACAAAAGATCTTATCTCTGCACTTGCCCTGC
ATTTCCCCGATAACCGGTATCGACTGCTGACCCAGCTTAACAAAAAAAAGGATGTGGAGGCTTTTTTTGGCAAAAACAAC
TCATTTGAATACCGGAATATCCTTCTCAACGAGCGAATGCTGGGTGAAAAAGGCCGCCCGTTTTTTCAGGCGATCAATCT
ATCGGTACTCCGAGAGGCTGCGAACCATACCGATATGTACCATGCAACCAATCCAACCCATTTTCCTGACGGCATCAAAA
ACGGTGTCGTAACACTGCACGACCTTATCGCCCTCCTTCCGGAGTCGTGGGCTTCCGTTGATTCGAGAACATTCTACCAC
AAAAAAATCAGCAGCATTCTGCAACAGGCAAAACTGGTTTTCACCGTCTCCGAATTTACCCGCAGCGACGCTCAGCACTA
CTTCCCGAAGTATGCGGATAAGTATGTAGCTACACCGCTTGCCGCCAACCCCGCCTTCCGACAAATCAGCACAAACAGAA
ACTTCCTGTTACAATATGGCATTGCTGATCCGCTTAAGCCCTACCTGCTCTATGTCGGAGAGATCCAGCCGAGAAAAAAC
ATTGAGGGCCTGCTGCGTGCATTTGAAGCCCTGCCCTCTGCCCTGCAACATGAATTACAGATCATTATTGTCGGACATGC
CAAGCGCAAGGAAAACCTCACACTCTTTCACGACGCGATCAACGACATGAAATCCCGCGCACCGGTTTATCACCTGCGAA
ACGTGCCCCTTGTTGACCTTGTAAAGCTATACAATGCCGCACATGCATTTGTCTATCTTTCGTTCTATGAGGGTTTTGGC
CTCCCGATCATCGAAGCCATGAGCTGCGGTTGCCCGGTACTGACATCAAAGACAACCTCGCTTGGTGAAGTGGCCGCTGA
TGCTGCGTTGACGATCGACCCCCGTGATCACGAGGAGATCACCGAGGCGCTGAAGCAACTGCTTGAAGAGGGCGAAACCA
GAAAGAAACTGATTGAAAAGGGCCTCCTGCGAGCACAGGAGTTTTCGTGA

Upstream 100 bases:

>100_bases
TGTATCGTGCGAGCACAACGTTTTTCCTGGCAAACAACCGCTCAGGAAACACTGAAAGGATACCATGCAATGCTGAATAA
ACCGTAACCCTTGATCGCCA

Downstream 100 bases:

>100_bases
AAAAAAACGGCAACAAAAACCATGGAGGGTTACAGGCTTGCATCTTCAGCATAACCCCCGATGACCTTTCACTGTTGCAT
GAACGCTCATATATGAATAA

Product: glycosyl transferase, group 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MALRNQSKQLHQKSNALNNRKKSTMNITYDVVKTAGYSGNLTYTKDLISALALHFPDNRYRLLTQLNKKKDVEAFFGKNN
SFEYRNILLNERMLGEKGRPFFQAINLSVLREAANHTDMYHATNPTHFPDGIKNGVVTLHDLIALLPESWASVDSRTFYH
KKISSILQQAKLVFTVSEFTRSDAQHYFPKYADKYVATPLAANPAFRQISTNRNFLLQYGIADPLKPYLLYVGEIQPRKN
IEGLLRAFEALPSALQHELQIIIVGHAKRKENLTLFHDAINDMKSRAPVYHLRNVPLVDLVKLYNAAHAFVYLSFYEGFG
LPIIEAMSCGCPVLTSKTTSLGEVAADAALTIDPRDHEEITEALKQLLEEGETRKKLIEKGLLRAQEFS

Sequences:

>Translated_389_residues
MALRNQSKQLHQKSNALNNRKKSTMNITYDVVKTAGYSGNLTYTKDLISALALHFPDNRYRLLTQLNKKKDVEAFFGKNN
SFEYRNILLNERMLGEKGRPFFQAINLSVLREAANHTDMYHATNPTHFPDGIKNGVVTLHDLIALLPESWASVDSRTFYH
KKISSILQQAKLVFTVSEFTRSDAQHYFPKYADKYVATPLAANPAFRQISTNRNFLLQYGIADPLKPYLLYVGEIQPRKN
IEGLLRAFEALPSALQHELQIIIVGHAKRKENLTLFHDAINDMKSRAPVYHLRNVPLVDLVKLYNAAHAFVYLSFYEGFG
LPIIEAMSCGCPVLTSKTTSLGEVAADAALTIDPRDHEEITEALKQLLEEGETRKKLIEKGLLRAQEFS
>Mature_388_residues
ALRNQSKQLHQKSNALNNRKKSTMNITYDVVKTAGYSGNLTYTKDLISALALHFPDNRYRLLTQLNKKKDVEAFFGKNNS
FEYRNILLNERMLGEKGRPFFQAINLSVLREAANHTDMYHATNPTHFPDGIKNGVVTLHDLIALLPESWASVDSRTFYHK
KISSILQQAKLVFTVSEFTRSDAQHYFPKYADKYVATPLAANPAFRQISTNRNFLLQYGIADPLKPYLLYVGEIQPRKNI
EGLLRAFEALPSALQHELQIIIVGHAKRKENLTLFHDAINDMKSRAPVYHLRNVPLVDLVKLYNAAHAFVYLSFYEGFGL
PIIEAMSCGCPVLTSKTTSLGEVAADAALTIDPRDHEEITEALKQLLEEGETRKKLIEKGLLRAQEFS

Specific function: Involved In The Addition Of The First Glucose Residue To The Lipopolysaccharide Core. [C]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 44112; Mature: 43981

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALRNQSKQLHQKSNALNNRKKSTMNITYDVVKTAGYSGNLTYTKDLISALALHFPDNRY
CCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHH
RLLTQLNKKKDVEAFFGKNNSFEYRNILLNERMLGEKGRPFFQAINLSVLREAANHTDMY
HHHHHHCCHHCHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCE
HATNPTHFPDGIKNGVVTLHDLIALLPESWASVDSRTFYHKKISSILQQAKLVFTVSEFT
ECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHEEHHHHH
RSDAQHYFPKYADKYVATPLAANPAFRQISTNRNFLLQYGIADPLKPYLLYVGEIQPRKN
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCEEEECCCCCCCC
IEGLLRAFEALPSALQHELQIIIVGHAKRKENLTLFHDAINDMKSRAPVYHLRNVPLVDL
HHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHCCCCCHHHH
VKLYNAAHAFVYLSFYEGFGLPIIEAMSCGCPVLTSKTTSLGEVAADAALTIDPRDHEEI
HHHHHHHHHHHEEEHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHHCCCEEEECCCCHHHH
TEALKQLLEEGETRKKLIEKGLLRAQEFS
HHHHHHHHHCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ALRNQSKQLHQKSNALNNRKKSTMNITYDVVKTAGYSGNLTYTKDLISALALHFPDNRY
CCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHH
RLLTQLNKKKDVEAFFGKNNSFEYRNILLNERMLGEKGRPFFQAINLSVLREAANHTDMY
HHHHHHCCHHCHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCE
HATNPTHFPDGIKNGVVTLHDLIALLPESWASVDSRTFYHKKISSILQQAKLVFTVSEFT
ECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHEEHHHHH
RSDAQHYFPKYADKYVATPLAANPAFRQISTNRNFLLQYGIADPLKPYLLYVGEIQPRKN
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCEEEECCCCCCCC
IEGLLRAFEALPSALQHELQIIIVGHAKRKENLTLFHDAINDMKSRAPVYHLRNVPLVDL
HHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHCCCCCHHHH
VKLYNAAHAFVYLSFYEGFGLPIIEAMSCGCPVLTSKTTSLGEVAADAALTIDPRDHEEI
HHHHHHHHHHHEEEHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHHCCCEEEECCCCHHHH
TEALKQLLEEGETRKKLIEKGLLRAQEFS
HHHHHHHHHCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]