| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is ydfG [C]
Identifier: 119356073
GI number: 119356073
Start: 252086
End: 252865
Strand: Direct
Name: ydfG [C]
Synonym: Cpha266_0226
Alternate gene names: 119356073
Gene position: 252086-252865 (Clockwise)
Preceding gene: 119356072
Following gene: 119356074
Centisome position: 8.04
GC content: 48.46
Gene sequence:
>780_bases ATGCTTTTTACGCTGGTGACGGGCGCTTCAATGGGTATAGGCGAAGCTTTCGCTCGTAAATTTGCTGAAACGGGAACATC TCTTTTACTTGTTGCCCGTTCAGAAGATAAACTTCTCGCTCTTGCCGAAGAGTTGAAAGCATCCGGAGCAACAGATGTGC GTATTCTGGCGGAAGACCTGAGCCGGGAGGGCAGTCCGGAGCGTATTTACGAGTTCTGTCTGAGAGAGAATATCGCAATA GATGTGCTGGTCAACTGTGCCGGCCTCTCCTTTGCGGGAGATTTTGACAAGCTTCCCGTGGGGAAACTCGAGGAGATTAT GGCGGTCAACATGTTGGCTTTATGCCGGCTTACCCGATTATTTCTGCCGGGTATGATTAAAAGAAAAGGCGGCGGTATCA TGAATATCGCTTCAATAGGCGGCTTTCAGGGCGTGCCTGGTCTGGCGCTTTATTCGGCTACCAAGTCATTTGTTATAACG CTGACAGAGGCATTGCATACTGAATTGAAAGAAACGGGGGTAAAAGCCGTCGCCGTATGTCCCGGGTTTATTCAAACAGG TTTTCTTGCGAAAGCCGGGCATAGTCAGGACGGGATTCTGCTGCCCGTTTACAGTAGAGATCTTGTCGTTAAAGCGGCAA TCAAAGGGTACAAGAAAAACCGGCTGAGAATATTCCCTACAGTTATCGATTTTCTGCTTGTTTTTTCCCAGAGATTTGTT CCCCGGAAAACAGCGGTCAAGCTTGCGGACGTTTTATCTTCGGCAAGAAGCAGAAGATAA
Upstream 100 bases:
>100_bases TCCAGGAAAAAGGCAAATGGGTGAATCCCTGAATACCTGAATAGCATCGTGCGCAAGGCCGGTCTGATGCTTGGTCAATC GTTATTTTATTTGAGTCTCT
Downstream 100 bases:
>100_bases TTTTTCTCTTTTTTTCTTTGATTATCCAGTGCCTGTAATTATATTACCTGCCCTGTTTTTTGAAAGAGCTGCTGGTGTAG CTCAATTGGTAGAGCAGCTG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 259
Protein sequence:
>259_residues MLFTLVTGASMGIGEAFARKFAETGTSLLLVARSEDKLLALAEELKASGATDVRILAEDLSREGSPERIYEFCLRENIAI DVLVNCAGLSFAGDFDKLPVGKLEEIMAVNMLALCRLTRLFLPGMIKRKGGGIMNIASIGGFQGVPGLALYSATKSFVIT LTEALHTELKETGVKAVAVCPGFIQTGFLAKAGHSQDGILLPVYSRDLVVKAAIKGYKKNRLRIFPTVIDFLLVFSQRFV PRKTAVKLADVLSSARSRR
Sequences:
>Translated_259_residues MLFTLVTGASMGIGEAFARKFAETGTSLLLVARSEDKLLALAEELKASGATDVRILAEDLSREGSPERIYEFCLRENIAI DVLVNCAGLSFAGDFDKLPVGKLEEIMAVNMLALCRLTRLFLPGMIKRKGGGIMNIASIGGFQGVPGLALYSATKSFVIT LTEALHTELKETGVKAVAVCPGFIQTGFLAKAGHSQDGILLPVYSRDLVVKAAIKGYKKNRLRIFPTVIDFLLVFSQRFV PRKTAVKLADVLSSARSRR >Mature_259_residues MLFTLVTGASMGIGEAFARKFAETGTSLLLVARSEDKLLALAEELKASGATDVRILAEDLSREGSPERIYEFCLRENIAI DVLVNCAGLSFAGDFDKLPVGKLEEIMAVNMLALCRLTRLFLPGMIKRKGGGIMNIASIGGFQGVPGLALYSATKSFVIT LTEALHTELKETGVKAVAVCPGFIQTGFLAKAGHSQDGILLPVYSRDLVVKAAIKGYKKNRLRIFPTVIDFLLVFSQRFV PRKTAVKLADVLSSARSRR
Specific function: Unknown
COG id: COG0300
COG function: function code R; Short-chain dehydrogenases of various substrate specificities
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7705855, Length=192, Percent_Identity=33.8541666666667, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI40807363, Length=251, Percent_Identity=28.2868525896414, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI226371731, Length=266, Percent_Identity=29.3233082706767, Blast_Score=98, Evalue=7e-21, Organism=Homo sapiens, GI210032110, Length=245, Percent_Identity=28.9795918367347, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI142976729, Length=247, Percent_Identity=32.7935222672065, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI4503817, Length=189, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI20149619, Length=193, Percent_Identity=31.0880829015544, Blast_Score=91, Evalue=8e-19, Organism=Homo sapiens, GI210032112, Length=197, Percent_Identity=28.9340101522843, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI109715829, Length=202, Percent_Identity=33.6633663366337, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI7706318, Length=195, Percent_Identity=32.3076923076923, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI4557649, Length=191, Percent_Identity=29.3193717277487, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI310128830, Length=217, Percent_Identity=30.8755760368664, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI310115468, Length=217, Percent_Identity=30.8755760368664, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI32483357, Length=185, Percent_Identity=26.4864864864865, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI40254992, Length=181, Percent_Identity=28.1767955801105, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI4504503, Length=196, Percent_Identity=26.530612244898, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI157739938, Length=208, Percent_Identity=25.4807692307692, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI25282469, Length=284, Percent_Identity=26.056338028169, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI66933014, Length=172, Percent_Identity=28.4883720930233, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI119392083, Length=195, Percent_Identity=27.6923076923077, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI5031737, Length=202, Percent_Identity=28.2178217821782, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=28.8659793814433, Blast_Score=64, Evalue=9e-11, Organism=Escherichia coli, GI1787820, Length=184, Percent_Identity=32.6086956521739, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI87082100, Length=197, Percent_Identity=31.4720812182741, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1787335, Length=184, Percent_Identity=31.5217391304348, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87082160, Length=182, Percent_Identity=26.9230769230769, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1786701, Length=258, Percent_Identity=26.7441860465116, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1789378, Length=221, Percent_Identity=28.0542986425339, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1790717, Length=184, Percent_Identity=25, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI2367175, Length=204, Percent_Identity=29.4117647058824, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71994604, Length=198, Percent_Identity=34.8484848484849, Blast_Score=101, Evalue=5e-22, Organism=Caenorhabditis elegans, GI71994600, Length=199, Percent_Identity=35.1758793969849, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI193203115, Length=225, Percent_Identity=31.5555555555556, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI193203117, Length=225, Percent_Identity=31.5555555555556, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17562908, Length=191, Percent_Identity=31.9371727748691, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17562906, Length=191, Percent_Identity=31.413612565445, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17564282, Length=261, Percent_Identity=27.5862068965517, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17508895, Length=250, Percent_Identity=28, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI25152911, Length=190, Percent_Identity=32.6315789473684, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17561402, Length=183, Percent_Identity=29.5081967213115, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17557668, Length=222, Percent_Identity=27.027027027027, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17555706, Length=188, Percent_Identity=31.9148936170213, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562910, Length=200, Percent_Identity=29, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17559552, Length=209, Percent_Identity=26.7942583732057, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI212646214, Length=206, Percent_Identity=26.2135922330097, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17562904, Length=196, Percent_Identity=27.5510204081633, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17560150, Length=195, Percent_Identity=29.2307692307692, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17560220, Length=191, Percent_Identity=29.3193717277487, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17560176, Length=194, Percent_Identity=27.8350515463918, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI71982276, Length=148, Percent_Identity=29.0540540540541, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17531453, Length=202, Percent_Identity=29.2079207920792, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17559104, Length=196, Percent_Identity=26.0204081632653, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193204405, Length=191, Percent_Identity=28.7958115183246, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17551412, Length=204, Percent_Identity=27.4509803921569, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17562990, Length=194, Percent_Identity=28.8659793814433, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17538480, Length=192, Percent_Identity=26.5625, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17560676, Length=190, Percent_Identity=23.6842105263158, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17560332, Length=193, Percent_Identity=27.979274611399, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI25147288, Length=195, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=8e-11, Organism=Caenorhabditis elegans, GI72000259, Length=197, Percent_Identity=28.4263959390863, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6319635, Length=185, Percent_Identity=34.0540540540541, Blast_Score=88, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=30.5699481865285, Blast_Score=83, Evalue=3e-17, Organism=Drosophila melanogaster, GI24640442, Length=192, Percent_Identity=35.9375, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI161076933, Length=250, Percent_Identity=29.6, Blast_Score=111, Evalue=4e-25, Organism=Drosophila melanogaster, GI24584748, Length=204, Percent_Identity=32.3529411764706, Blast_Score=111, Evalue=5e-25, Organism=Drosophila melanogaster, GI24584744, Length=205, Percent_Identity=31.7073170731707, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI28574402, Length=205, Percent_Identity=31.7073170731707, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI28571526, Length=193, Percent_Identity=33.6787564766839, Blast_Score=104, Evalue=5e-23, Organism=Drosophila melanogaster, GI24644339, Length=189, Percent_Identity=33.3333333333333, Blast_Score=104, Evalue=7e-23, Organism=Drosophila melanogaster, GI24584752, Length=226, Percent_Identity=32.3008849557522, Blast_Score=104, Evalue=7e-23, Organism=Drosophila melanogaster, GI21357041, Length=193, Percent_Identity=34.1968911917098, Blast_Score=104, Evalue=8e-23, Organism=Drosophila melanogaster, GI21358495, Length=186, Percent_Identity=32.258064516129, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI116007236, Length=192, Percent_Identity=30.7291666666667, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI23397609, Length=201, Percent_Identity=30.8457711442786, Blast_Score=84, Evalue=7e-17, Organism=Drosophila melanogaster, GI116007238, Length=187, Percent_Identity=31.0160427807487, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI281364494, Length=200, Percent_Identity=30, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI24639444, Length=189, Percent_Identity=31.2169312169312, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24643142, Length=186, Percent_Identity=30.6451612903226, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI28571387, Length=191, Percent_Identity=27.2251308900524, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24580925, Length=194, Percent_Identity=30.4123711340206, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI21356301, Length=183, Percent_Identity=30.0546448087432, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24641232, Length=192, Percent_Identity=29.6875, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI221510726, Length=188, Percent_Identity=31.3829787234043, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24581726, Length=214, Percent_Identity=25.7009345794392, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI281364892, Length=255, Percent_Identity=23.921568627451, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI17737361, Length=200, Percent_Identity=28, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24665247, Length=187, Percent_Identity=27.807486631016, Blast_Score=64, Evalue=9e-11, Organism=Drosophila melanogaster, GI221331216, Length=187, Percent_Identity=27.807486631016, Blast_Score=64, Evalue=9e-11, Organism=Drosophila melanogaster, GI24648944, Length=214, Percent_Identity=28.5046728971963, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 27999; Mature: 27999
Theoretical pI: Translated: 10.00; Mature: 10.00
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFTLVTGASMGIGEAFARKFAETGTSLLLVARSEDKLLALAEELKASGATDVRILAEDL CEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHH SREGSPERIYEFCLRENIAIDVLVNCAGLSFAGDFDKLPVGKLEEIMAVNMLALCRLTRL CCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH FLPGMIKRKGGGIMNIASIGGFQGVPGLALYSATKSFVITLTEALHTELKETGVKAVAVC HHCHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC PGFIQTGFLAKAGHSQDGILLPVYSRDLVVKAAIKGYKKNRLRIFPTVIDFLLVFSQRFV CHHHHHCCHHCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCC PRKTAVKLADVLSSARSRR CHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLFTLVTGASMGIGEAFARKFAETGTSLLLVARSEDKLLALAEELKASGATDVRILAEDL CEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHH SREGSPERIYEFCLRENIAIDVLVNCAGLSFAGDFDKLPVGKLEEIMAVNMLALCRLTRL CCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH FLPGMIKRKGGGIMNIASIGGFQGVPGLALYSATKSFVITLTEALHTELKETGVKAVAVC HHCHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC PGFIQTGFLAKAGHSQDGILLPVYSRDLVVKAAIKGYKKNRLRIFPTVIDFLLVFSQRFV CHHHHHCCHHCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCC PRKTAVKLADVLSSARSRR CHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12950922 [H]