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The map label for this gene is rlpA [C]

Identifier: 119356062

GI number: 119356062

Start: 238734

End: 239249

Strand: Direct

Name: rlpA [C]

Synonym: Cpha266_0215

Alternate gene names: 119356062

Gene position: 238734-239249 (Clockwise)

Preceding gene: 119356059

Following gene: 119356066

Centisome position: 7.62

GC content: 48.84

Gene sequence:

>516_bases
ATGAGAGATGAAAAACGAAATTTCACCATCCCATTTTATGCCCTTTTGATAGGGGCCTGGTACACCGCACTCCAGATTAC
TTTTCCGGCTTTCAGTAGCGCACAACCACCGGAATTCTCCATTCAATCCATAACTAATCAACCATCAGCAAGTTCTTCCG
GCATGTTGTCGGATCAACCGAAATCCAGGACTTTCCTGCGTGTTGCCGAAGGCAAGGCATCATATTATTCGAATCAGTTT
CACGGGCGAAGGACTGCCAATGGCGAAACCTTTGATATGAATGAACTGACGGCTGCTCATCCTTCGCTGCCTTTTGGTAC
CTGGGTCAGGGTTATCAATCTCAGAAACGGTAAAGATGTTGTTGTACGCATCAACGATCGGGGCCCATTTGTCAGGGGTC
GTATCATTGACCTTTCCGCCGGTGCGGCAAAGCGAATCGGGCTTTTTAAGTCCGGTACAGCCAATGTGAGGATCGAGCCT
GTAAAGCATAGTCCCGAAGACCCGATGGCAGGTTGA

Upstream 100 bases:

>100_bases
TAGGCCATAAGTTTGTCTGTTGAATAATAATTTTGATATTTATTCATTTTCCTGTTCTTTTGCATGCTGTTTAAGGGACA
GATAATTAAACCTTAGCACA

Downstream 100 bases:

>100_bases
TGAAAAAAGTCTATTCAGCACTACAGGTCAAGTGTTAGTTTCAGCTTGTTTCAGGCAGCATTAAACAGAGAGGGTATGAA
GCAATTCGATGCTTCATACC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MRDEKRNFTIPFYALLIGAWYTALQITFPAFSSAQPPEFSIQSITNQPSASSSGMLSDQPKSRTFLRVAEGKASYYSNQF
HGRRTANGETFDMNELTAAHPSLPFGTWVRVINLRNGKDVVVRINDRGPFVRGRIIDLSAGAAKRIGLFKSGTANVRIEP
VKHSPEDPMAG

Sequences:

>Translated_171_residues
MRDEKRNFTIPFYALLIGAWYTALQITFPAFSSAQPPEFSIQSITNQPSASSSGMLSDQPKSRTFLRVAEGKASYYSNQF
HGRRTANGETFDMNELTAAHPSLPFGTWVRVINLRNGKDVVVRINDRGPFVRGRIIDLSAGAAKRIGLFKSGTANVRIEP
VKHSPEDPMAG
>Mature_171_residues
MRDEKRNFTIPFYALLIGAWYTALQITFPAFSSAQPPEFSIQSITNQPSASSSGMLSDQPKSRTFLRVAEGKASYYSNQF
HGRRTANGETFDMNELTAAHPSLPFGTWVRVINLRNGKDVVVRINDRGPFVRGRIIDLSAGAAKRIGLFKSGTANVRIEP
VKHSPEDPMAG

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=91, Percent_Identity=48.3516483516484, Blast_Score=88, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 18905; Mature: 18905

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDEKRNFTIPFYALLIGAWYTALQITFPAFSSAQPPEFSIQSITNQPSASSSGMLSDQP
CCCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
KSRTFLRVAEGKASYYSNQFHGRRTANGETFDMNELTAAHPSLPFGTWVRVINLRNGKDV
CCCEEEEEECCCCHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCEE
VVRINDRGPFVRGRIIDLSAGAAKRIGLFKSGTANVRIEPVKHSPEDPMAG
EEEECCCCCEEEEEEEEECCCCCHHCEEEECCCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure
MRDEKRNFTIPFYALLIGAWYTALQITFPAFSSAQPPEFSIQSITNQPSASSSGMLSDQP
CCCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
KSRTFLRVAEGKASYYSNQFHGRRTANGETFDMNELTAAHPSLPFGTWVRVINLRNGKDV
CCCEEEEEECCCCHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCEE
VVRINDRGPFVRGRIIDLSAGAAKRIGLFKSGTANVRIEPVKHSPEDPMAG
EEEECCCCCEEEEEEEEECCCCCHHCEEEECCCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]