| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is 119356007
Identifier: 119356007
GI number: 119356007
Start: 178891
End: 181584
Strand: Direct
Name: 119356007
Synonym: Cpha266_0160
Alternate gene names: NA
Gene position: 178891-181584 (Clockwise)
Preceding gene: 119356006
Following gene: 119356011
Centisome position: 5.71
GC content: 49.11
Gene sequence:
>2694_bases ATGACTACCACTCGATTGAGGCGGCAATACCAATATTTCGCATTCATCAGTTACAGCCACACTGATGCAAAGGTTGCGGA ATGGCTTCATCGAAAGCTTGAGTCCTATAGGCTTCCCAATGCTGTACTCAGGAAATCTGACGGGCAACTTCCCAGGCATG TTCGTCCGATATTCAGGGATATAGCAGATTTATCATCAGGTTCATTGGCCAGGACATTGAGAGAAGAGATTGGCCAGTCG CAGTTTCTTATTGTCATATGCTCGCCTGACAGCGCGAAATCGGAATGGGTCGAAATGGAAGTGAGCCATTTTCTGACCCT TCGTGGCCATGAGTTTGTGATTCCGGTGATCATCAAGGGAACCCCTTACGCCAAGGATGCAGTAGACGAATGTCTGCCGC TATCATTGTTGCGCACTGAAGTCGATCTCCTCGGTATTTCGTTTGCCGGACAATCGAAAGAGCAAGTGCTCCTCAAAACG GTCTCGGCTTTGCTGGATATCAAGTACGACTCGCTTTATGATCGGCACCGCCGGCGACAGCGCCGACAAAGAATGTTTGC TGCAACTGTCGTAACCGTTATGTTTGTCGTCGTGCTAACGGCTTCTCTATTCAGTTTTATACAATGGAATCGGGCGGAGC AGCGTCGCGCCGAGGCAGAGCAGCTCCTCAATTATTTGCTTTTGGACCTTCACCCTAAACTGAAGCAATTTGGACGTCTG GATATCCTGGAGAGCGTCGCGGAGAAATCACGCGAGTACATTGATTATATTTCCACGGATGTCAGGGATCCCATTGACGC TATTCAGGCGATTTCGTTACGCAGAAACATGGCTGAAGTGTATCAGAGTGTCGGCAAGCTCGAGAACGCTGAAGCTTTGC ACCTGAAGAATATTTCTGTGCTAAAGAAATTGGAACAGATTGATCCAAAGATGGAGATTATCCATCTCCTCAAAGGAGAA GAGCATCAGGCTTTGGCCAGTATCCGAAAAACGGAGGGTCGATTTCAGGATGCATTGCATGAGAGTCTGACCGCGTTCTC TGTATTCAAGTCGTTCGTTTCGGTGAAGAGCGATGCCCGATGGCGATCTGCAAAGGCCAGCAGCGAACAGCGTCTTTCCG ATGCCTATTACGATCTCGGGATGGGCAAGCAGGCTGCCTGGCACATAAATTCAGCAGTTTCGGATTTCAGGCGGATTCTT CATGAGCATTCAGCAGGCGATAACTCGTATAAAGCAGATCTTGCGTATGCGTTGGTCAGCAAATCCAGAGTCGAGGTGAA GTGGGGCACCACTTCTCGCGCTTATTCCGTGTTTGTCGAGGCTTCGGAGCTATTTCGGCAGCATCTTGAAGAACATCCTG AAGACCGGGAAGTCAGGGCCTCCTTTGCAAACGTGGTCAGCGATCTGGCTGCTATGCTGAAAGATATGGGAAGGCTTGAA GATGCTTTGATTTACTGGGATCTGGCGATCGATGCAGAGCGCGAGCTTGTGACCTTTGAACCGCTTAATGTCCGGTGGCA TGCAGATTTGTCAGAGACGATGATGAACAAAGCAAATGCATTGGGACGATTGGGACGAACAGGTGAAGGGTTTCTTCTCT ACGAAGAAGTCAGCAGGCACCAACGGAAGCTGATAGCCCTTCAGCCAAAGGTTGCCAGATGGCGGGCGACTTACGCATGG TGCCGTCACAATATGGCGATCGAATACGCTCGTCTCGGAAAGAACAAGGGTGCAATAGATTTGTGGAATGACGCGATTGC AACGATTGAGCAACTCCGTAAAGATGGTCGGGCAAAGCGTGAATGGCTGCTTGACCTCTGCAATATGCTCGATCAACGAG CGACGATTACAGCAGAAAACGGTAATTTTGAAAAAGCGGAACAAGATATCAAGGCATCACAAGCTATCAGGGCTTCGTTG ATATCCGATTCCAATTCGAGTCCTGATGAGCTTTCGCAGATGGGTCTTAACCAAGCCAGAAAGGCGTTACTGGATTACTA TCGCAAGGACTACTCGCACGCCATGGTCTCGATAAAGGCAGCCGAAGGATACTTGCGCCGCGCGGTCAAGCTTGATGAGG CTAATTGCGAATGGCGTGCGCATCTTGCAGGGACCCTCAGAAATTCGAGCGTGATCCACCGTGCAGCCGGTTTCCCTGAC AAGGCAAAGAGGGCTATTGACGAATGCATCGTAATTTTAGAAAAGCTGAGAATTCGACAACCCTCCGACAAGAAAATACG GGTTGATCTTTCTCAAGCTTATAACAATCAGGGAAACCTGTATAACGATTTCGGCAGCATTAAATCTTCGGTTTCGGCGT GGGAAAAGTCGCTGACACTTGATTCCGATCCGGCTCAGAGAGAATTCCTTGCCACTCGTTTGGGTACCTTGGCCTATCAA TACATTCTTCTGCAGGATCCGGGCAAGTCTGAAATGTCTGCGCGTAAGGCGCTTGAAGTGGATGCTGCTCCATGGATACA AATCAACCTTGGACATGCGCTATTTCTTCAGGACATGCGCGAGGCTGCAAAAGCTCAGTATCTCAATGCTATGCGTAAGG ATGGAAAGATTCTTGCGTCGATCAGCGCCGATTTTGTTGATATGGAGAATCATGGAATACACGTTCGAAACGCGATTCAG ATGCTCGATGAGTTGAGAGGCGCTGCCTTGGAGACAAATAACGAAAAACAGTGA
Upstream 100 bases:
>100_bases TCATCACACGTTATAGCGGTGCCCTTTGGATGAGTTGTTCGGAAAAAAACGTGATATTGCAAGAGTTTCAGGATTTTGAA CAGCGAACGGGAGCTTTTCC
Downstream 100 bases:
>100_bases AAACGAAACAGGAGCATCGGAGCAAGAGAAAAATCTGTTGGTAAATCTTTCATACTGAATAAACAGATCTGTTCTATAGG CCAAACGCCGGATTTTATTG
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: WD Repeat-Containing Protein; TPR Domain-Containing Protein
Number of amino acids: Translated: 897; Mature: 896
Protein sequence:
>897_residues MTTTRLRRQYQYFAFISYSHTDAKVAEWLHRKLESYRLPNAVLRKSDGQLPRHVRPIFRDIADLSSGSLARTLREEIGQS QFLIVICSPDSAKSEWVEMEVSHFLTLRGHEFVIPVIIKGTPYAKDAVDECLPLSLLRTEVDLLGISFAGQSKEQVLLKT VSALLDIKYDSLYDRHRRRQRRQRMFAATVVTVMFVVVLTASLFSFIQWNRAEQRRAEAEQLLNYLLLDLHPKLKQFGRL DILESVAEKSREYIDYISTDVRDPIDAIQAISLRRNMAEVYQSVGKLENAEALHLKNISVLKKLEQIDPKMEIIHLLKGE EHQALASIRKTEGRFQDALHESLTAFSVFKSFVSVKSDARWRSAKASSEQRLSDAYYDLGMGKQAAWHINSAVSDFRRIL HEHSAGDNSYKADLAYALVSKSRVEVKWGTTSRAYSVFVEASELFRQHLEEHPEDREVRASFANVVSDLAAMLKDMGRLE DALIYWDLAIDAERELVTFEPLNVRWHADLSETMMNKANALGRLGRTGEGFLLYEEVSRHQRKLIALQPKVARWRATYAW CRHNMAIEYARLGKNKGAIDLWNDAIATIEQLRKDGRAKREWLLDLCNMLDQRATITAENGNFEKAEQDIKASQAIRASL ISDSNSSPDELSQMGLNQARKALLDYYRKDYSHAMVSIKAAEGYLRRAVKLDEANCEWRAHLAGTLRNSSVIHRAAGFPD KAKRAIDECIVILEKLRIRQPSDKKIRVDLSQAYNNQGNLYNDFGSIKSSVSAWEKSLTLDSDPAQREFLATRLGTLAYQ YILLQDPGKSEMSARKALEVDAAPWIQINLGHALFLQDMREAAKAQYLNAMRKDGKILASISADFVDMENHGIHVRNAIQ MLDELRGAALETNNEKQ
Sequences:
>Translated_897_residues MTTTRLRRQYQYFAFISYSHTDAKVAEWLHRKLESYRLPNAVLRKSDGQLPRHVRPIFRDIADLSSGSLARTLREEIGQS QFLIVICSPDSAKSEWVEMEVSHFLTLRGHEFVIPVIIKGTPYAKDAVDECLPLSLLRTEVDLLGISFAGQSKEQVLLKT VSALLDIKYDSLYDRHRRRQRRQRMFAATVVTVMFVVVLTASLFSFIQWNRAEQRRAEAEQLLNYLLLDLHPKLKQFGRL DILESVAEKSREYIDYISTDVRDPIDAIQAISLRRNMAEVYQSVGKLENAEALHLKNISVLKKLEQIDPKMEIIHLLKGE EHQALASIRKTEGRFQDALHESLTAFSVFKSFVSVKSDARWRSAKASSEQRLSDAYYDLGMGKQAAWHINSAVSDFRRIL HEHSAGDNSYKADLAYALVSKSRVEVKWGTTSRAYSVFVEASELFRQHLEEHPEDREVRASFANVVSDLAAMLKDMGRLE DALIYWDLAIDAERELVTFEPLNVRWHADLSETMMNKANALGRLGRTGEGFLLYEEVSRHQRKLIALQPKVARWRATYAW CRHNMAIEYARLGKNKGAIDLWNDAIATIEQLRKDGRAKREWLLDLCNMLDQRATITAENGNFEKAEQDIKASQAIRASL ISDSNSSPDELSQMGLNQARKALLDYYRKDYSHAMVSIKAAEGYLRRAVKLDEANCEWRAHLAGTLRNSSVIHRAAGFPD KAKRAIDECIVILEKLRIRQPSDKKIRVDLSQAYNNQGNLYNDFGSIKSSVSAWEKSLTLDSDPAQREFLATRLGTLAYQ YILLQDPGKSEMSARKALEVDAAPWIQINLGHALFLQDMREAAKAQYLNAMRKDGKILASISADFVDMENHGIHVRNAIQ MLDELRGAALETNNEKQ >Mature_896_residues TTTRLRRQYQYFAFISYSHTDAKVAEWLHRKLESYRLPNAVLRKSDGQLPRHVRPIFRDIADLSSGSLARTLREEIGQSQ FLIVICSPDSAKSEWVEMEVSHFLTLRGHEFVIPVIIKGTPYAKDAVDECLPLSLLRTEVDLLGISFAGQSKEQVLLKTV SALLDIKYDSLYDRHRRRQRRQRMFAATVVTVMFVVVLTASLFSFIQWNRAEQRRAEAEQLLNYLLLDLHPKLKQFGRLD ILESVAEKSREYIDYISTDVRDPIDAIQAISLRRNMAEVYQSVGKLENAEALHLKNISVLKKLEQIDPKMEIIHLLKGEE HQALASIRKTEGRFQDALHESLTAFSVFKSFVSVKSDARWRSAKASSEQRLSDAYYDLGMGKQAAWHINSAVSDFRRILH EHSAGDNSYKADLAYALVSKSRVEVKWGTTSRAYSVFVEASELFRQHLEEHPEDREVRASFANVVSDLAAMLKDMGRLED ALIYWDLAIDAERELVTFEPLNVRWHADLSETMMNKANALGRLGRTGEGFLLYEEVSRHQRKLIALQPKVARWRATYAWC RHNMAIEYARLGKNKGAIDLWNDAIATIEQLRKDGRAKREWLLDLCNMLDQRATITAENGNFEKAEQDIKASQAIRASLI SDSNSSPDELSQMGLNQARKALLDYYRKDYSHAMVSIKAAEGYLRRAVKLDEANCEWRAHLAGTLRNSSVIHRAAGFPDK AKRAIDECIVILEKLRIRQPSDKKIRVDLSQAYNNQGNLYNDFGSIKSSVSAWEKSLTLDSDPAQREFLATRLGTLAYQY ILLQDPGKSEMSARKALEVDAAPWIQINLGHALFLQDMREAAKAQYLNAMRKDGKILASISADFVDMENHGIHVRNAIQM LDELRGAALETNNEKQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 102339; Mature: 102208
Theoretical pI: Translated: 8.75; Mature: 8.75
Prosite motif: PS50104 TIR ; PS50005 TPR L=RR ; PS50293 TPR_REGION L=RR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTTRLRRQYQYFAFISYSHTDAKVAEWLHRKLESYRLPNAVLRKSDGQLPRHVRPIFRD CCCHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHH IADLSSGSLARTLREEIGQSQFLIVICSPDSAKSEWVEMEVSHFLTLRGHEFVIPVIIKG HHHCCCCHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHEECCCEEEEEEEECC TPYAKDAVDECLPLSLLRTEVDLLGISFAGQSKEQVLLKTVSALLDIKYDSLYDRHRRRQ CCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH RRQRMFAATVVTVMFVVVLTASLFSFIQWNRAEQRRAEAEQLLNYLLLDLHPKLKQFGRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHCCHH DILESVAEKSREYIDYISTDVRDPIDAIQAISLRRNMAEVYQSVGKLENAEALHLKNISV HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHH LKKLEQIDPKMEIIHLLKGEEHQALASIRKTEGRFQDALHESLTAFSVFKSFVSVKSDAR HHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH WRSAKASSEQRLSDAYYDLGMGKQAAWHINSAVSDFRRILHEHSAGDNSYKADLAYALVS HHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH KSRVEVKWGTTSRAYSVFVEASELFRQHLEEHPEDREVRASFANVVSDLAAMLKDMGRLE CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH DALIYWDLAIDAERELVTFEPLNVRWHADLSETMMNKANALGRLGRTGEGFLLYEEVSRH HHEEEEEEEECCCCCEEEECCCCEEECCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHH QRKLIALQPKVARWRATYAWCRHNMAIEYARLGKNKGAIDLWNDAIATIEQLRKDGRAKR HHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCHHH EWLLDLCNMLDQRATITAENGNFEKAEQDIKASQAIRASLISDSNSSPDELSQMGLNQAR HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH KALLDYYRKDYSHAMVSIKAAEGYLRRAVKLDEANCEWRAHLAGTLRNSSVIHRAAGFPD HHHHHHHHHHHHHHHEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHCCCCH KAKRAIDECIVILEKLRIRQPSDKKIRVDLSQAYNNQGNLYNDFGSIKSSVSAWEKSLTL HHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCC DSDPAQREFLATRLGTLAYQYILLQDPGKSEMSARKALEVDAAPWIQINLGHALFLQDMR CCCHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH EAAKAQYLNAMRKDGKILASISADFVDMENHGIHVRNAIQMLDELRGAALETNNEKQ HHHHHHHHHHHHHCCCEEEECCCCCEECCCCCCHHHHHHHHHHHHCCCEECCCCCCC >Mature Secondary Structure TTTRLRRQYQYFAFISYSHTDAKVAEWLHRKLESYRLPNAVLRKSDGQLPRHVRPIFRD CCHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHH IADLSSGSLARTLREEIGQSQFLIVICSPDSAKSEWVEMEVSHFLTLRGHEFVIPVIIKG HHHCCCCHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHEECCCEEEEEEEECC TPYAKDAVDECLPLSLLRTEVDLLGISFAGQSKEQVLLKTVSALLDIKYDSLYDRHRRRQ CCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH RRQRMFAATVVTVMFVVVLTASLFSFIQWNRAEQRRAEAEQLLNYLLLDLHPKLKQFGRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHCCHH DILESVAEKSREYIDYISTDVRDPIDAIQAISLRRNMAEVYQSVGKLENAEALHLKNISV HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHH LKKLEQIDPKMEIIHLLKGEEHQALASIRKTEGRFQDALHESLTAFSVFKSFVSVKSDAR HHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH WRSAKASSEQRLSDAYYDLGMGKQAAWHINSAVSDFRRILHEHSAGDNSYKADLAYALVS HHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH KSRVEVKWGTTSRAYSVFVEASELFRQHLEEHPEDREVRASFANVVSDLAAMLKDMGRLE CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH DALIYWDLAIDAERELVTFEPLNVRWHADLSETMMNKANALGRLGRTGEGFLLYEEVSRH HHEEEEEEEECCCCCEEEECCCCEEECCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHH QRKLIALQPKVARWRATYAWCRHNMAIEYARLGKNKGAIDLWNDAIATIEQLRKDGRAKR HHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCHHH EWLLDLCNMLDQRATITAENGNFEKAEQDIKASQAIRASLISDSNSSPDELSQMGLNQAR HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH KALLDYYRKDYSHAMVSIKAAEGYLRRAVKLDEANCEWRAHLAGTLRNSSVIHRAAGFPD HHHHHHHHHHHHHHHEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHCCCCH KAKRAIDECIVILEKLRIRQPSDKKIRVDLSQAYNNQGNLYNDFGSIKSSVSAWEKSLTL HHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCC DSDPAQREFLATRLGTLAYQYILLQDPGKSEMSARKALEVDAAPWIQINLGHALFLQDMR CCCHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH EAAKAQYLNAMRKDGKILASISADFVDMENHGIHVRNAIQMLDELRGAALETNNEKQ HHHHHHHHHHHHHCCCEEEECCCCCEECCCCCCHHHHHHHHHHHHCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA