| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
Click here to switch to the map view.
The map label for this gene is 119355907
Identifier: 119355907
GI number: 119355907
Start: 62761
End: 65244
Strand: Direct
Name: 119355907
Synonym: Cpha266_0057
Alternate gene names: NA
Gene position: 62761-65244 (Clockwise)
Preceding gene: 119355902
Following gene: 119355908
Centisome position: 2.0
GC content: 58.94
Gene sequence:
>2484_bases ATGGCAGCGTATGATCTTCTCGATAAGAGCGAAAATCCACATCGCGCTGCTGAACTTCTTCTGGAAGCAGGATCTTTGGT TGACGGTGAGGCCGAGCCGAAAAAGTGGGCAGCCTTCCGGCAGTTGTATGCGCAGTATTCCGAGACCTCCGATCCTGAGG CGGCCATAACGGCCTATCGTGACGCACTCTCCGTGTGGGATCCGGTTCTTGATCGGGATGCATGGGTTGCCTGTCACAGC GGTATCGGTTCCCTTATGGTAAACCTCCAGCCCTTCGGCCCGAAAGAACTCGACGAAGCCGTCATGCATCTTGAGTCGGC CGTCCAGGCCCAGCCTTTTCTCTCTTCGATGCTTGCCGTGCTCTACCGGTTTCGCTCTGCCGGCGATCCCCGCGAAAACT GGCAAAAAAGGGTTCATCACCTTCGGCAGGCTCTCCTGCTGATCGACCGTGATGAAGAGCCCTGCGGTTGGGCTGCCGCG AACAACGAACTGGCAATCGCCATAGGGGACGAACCGGATGCCGACTTCGGGGCTGCCCTTGAAGAGCGTCTTCGGCTTCA TCTCGAATCATTCGGCCTGCTTGAGGGAAATAAGGACGATACATGGATCGATACCTGCCTCTCCCTGTCGGAGTGCTACC TTTTCCGGGGCGGCATTGATGACCGGGAAAATCAGGAACAGGCGGAACGTTATGCCCGTCTTGCGCTCGATGCGGCCGGG ACAGAGGTTTCCGGGCCCTTGAGGGCGGAAGTCCTGCTCAACCTTGCCAGAGTGCTGATGGCTCCGGGCAGGTTCTTCGA CGCTGACCGCATACGGCAGTGCCTTTCCTGCTGCGACGAGTCCGCAGCCCTGATCGATCCTGTGAGATCGCCGGCGCTCA TGGCCAGCGTGGAGTCGTTCCGTGCCAATGCATTGCTCAAGCTTATCCAGAACGGGGAGCCTTGCGATGAAGAGAGGCTT GCAGCACACGCCGAAGCTGCGCTTGCATTGCTTCCGGGAGTCGAGCATACCTCCAGTCGCCGGTCTATCCTGCAGGTTGC CGGCGAGGGAATGCTTGCGGCACGACACGACGAACGTGCTGCCGGTTACTTCAGAGAAGCGCTCGATGCCGCAGCATCGG CGCTTCTTTTCGCCGAAAGCCGCGAGGGGCGTATGCAGCGGATATGGGAGTTCAGGGACACCTCCGCGCTGCTTGCATGG AGCCTCCTCAAACTCGGGGACAAAGAGAATGCCCTTGTCGAGCTTGAAAAGGGTAAAGGGCGGTTCTGGAGGACAGACGA CGAAGCGCTCTCTGTTGCCGCGATTCGATCGATCGTTCCGTCAGGCGGCGCACTGCTTGTGGCCAATTTCTCGTGTCGGG AAGGAGCGGTGATCGTCGTGACCGGAGAACGGATCGAGATTGTCTGGCTGCCCTCTTTCGGAAAGGATCGGCTTATGGCG CTTCAGCGCGGAGGTCTCGACGTCGCATCGCCCGGAGGATGGCTTCGGGCTTACCATATGAGAAATTCCGAACATGAAGC GTGGCGCAGGATGATCGAAGAGACCGGCGAAACGCTTTACCGGGAACTCTGGGAGCCGGTACTGGATCTTCTGCAGGATA TGGGTATTGCCGACGATGCCGAGCTTGTCTGGTTCCCTCAGGGAGGCAGCGGAGTATTTCCCGTCCATGCGGCATGGCGT CAGGATTCGGACGGCTCGAAGCGCTGGTTGATCGACAGGTTTACCGTGCGTTATGCCCCCGATTTTCAGGTGCTGCTTTC CGGAGAGTCAGGAGTCGGTTGCGCCTCAGGTTCGCTTCTCCTTGTGGCAAATCCCTGCGGAGACCTCGATTTCAGCGAAC TGGAGTGCGCATGGGTAAGGCAATACCATACAGGAAGAGAGCTGAAGCTTCTGCACGGAATTGATGCGACTCCCGATGCG GTGCTTGATGCCATCGGGAGTGCGGGCATCGTTCATTTTTCGACGCATGCGATATTCGATCTCAACAGGCCGCTCTGTTC CGCTCTCCTGCTGGCCGGCGGAGAGCCGCTTTCGCTTGAGCGGCTCATACCGGCGCTTGAACAGAAAGCTCCTTACCTTG TTGTGCTCTCCGCCTGCGAAACGGCGATGTCGCGCATCAGTTCCACGCCCGATGAATTTCTCGGATTTCCGGCGGCATTT CTCCATTCCGGGGTGCGAACCGTACTGGCGACGCTCTGGCCGGTGGACGACGCTGCTACGGCTGTGCTTACCGGGCGTTT TTACCGGGAGCTTGCCGTCAATAATCACTCTCCGTCGCGGGCGCTCAGGGAGGCCCAGAACTGGATTCGCAGCGTGACCG CCCTGGAGCTTATGGAGCTCATGCGGGAGATGAAAAACGCTCCGCCGCCCGCAGGTCCCCTTGCCGGACGTATCCGTACC GCCCTGAGAGCGTTCGATCCGGAGTTAAAACCATTCGCATCGCCCTACTACTGGGCGGCATTCACCATATCAGGAAAGGA GTGA
Upstream 100 bases:
>100_bases TTGTATTTTACCTGGTATAAACCGCTGGCGTGCTGTTAAGCTGAAACCATTACTCGAAGTGGATAAATCAGAACACGACA GGGAGCGCTTTATTTCCCTT
Downstream 100 bases:
>100_bases AACCATGACGGAACTTGTTCAGCAACTCGCGCTGCTCGATGCGCTGCTCAGTAACTGGGACGGCGTGCTTGTAAGGATGG GCGCGCCCGACGTTCTGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Repeat Family; Tetratricopeptide Domain Protein; Haemagglutination Activity Domain Protein; WD-40 Repeat-Containing Protein; Filamentous Hemagglutinin Family Outer Membrane Protein; TPR Domain-Containing Protein; LigA Protein; Peptidase Domain-Containing Protein; Clp Domain-Containing Protein; Protein Prenyltransferase Subunit Alpha; Tetratricopeptide Repeat-Containing Protein; PBS Lyase HEAT-Like Repeat Domain Protein
Number of amino acids: Translated: 827; Mature: 826
Protein sequence:
>827_residues MAAYDLLDKSENPHRAAELLLEAGSLVDGEAEPKKWAAFRQLYAQYSETSDPEAAITAYRDALSVWDPVLDRDAWVACHS GIGSLMVNLQPFGPKELDEAVMHLESAVQAQPFLSSMLAVLYRFRSAGDPRENWQKRVHHLRQALLLIDRDEEPCGWAAA NNELAIAIGDEPDADFGAALEERLRLHLESFGLLEGNKDDTWIDTCLSLSECYLFRGGIDDRENQEQAERYARLALDAAG TEVSGPLRAEVLLNLARVLMAPGRFFDADRIRQCLSCCDESAALIDPVRSPALMASVESFRANALLKLIQNGEPCDEERL AAHAEAALALLPGVEHTSSRRSILQVAGEGMLAARHDERAAGYFREALDAAASALLFAESREGRMQRIWEFRDTSALLAW SLLKLGDKENALVELEKGKGRFWRTDDEALSVAAIRSIVPSGGALLVANFSCREGAVIVVTGERIEIVWLPSFGKDRLMA LQRGGLDVASPGGWLRAYHMRNSEHEAWRRMIEETGETLYRELWEPVLDLLQDMGIADDAELVWFPQGGSGVFPVHAAWR QDSDGSKRWLIDRFTVRYAPDFQVLLSGESGVGCASGSLLLVANPCGDLDFSELECAWVRQYHTGRELKLLHGIDATPDA VLDAIGSAGIVHFSTHAIFDLNRPLCSALLLAGGEPLSLERLIPALEQKAPYLVVLSACETAMSRISSTPDEFLGFPAAF LHSGVRTVLATLWPVDDAATAVLTGRFYRELAVNNHSPSRALREAQNWIRSVTALELMELMREMKNAPPPAGPLAGRIRT ALRAFDPELKPFASPYYWAAFTISGKE
Sequences:
>Translated_827_residues MAAYDLLDKSENPHRAAELLLEAGSLVDGEAEPKKWAAFRQLYAQYSETSDPEAAITAYRDALSVWDPVLDRDAWVACHS GIGSLMVNLQPFGPKELDEAVMHLESAVQAQPFLSSMLAVLYRFRSAGDPRENWQKRVHHLRQALLLIDRDEEPCGWAAA NNELAIAIGDEPDADFGAALEERLRLHLESFGLLEGNKDDTWIDTCLSLSECYLFRGGIDDRENQEQAERYARLALDAAG TEVSGPLRAEVLLNLARVLMAPGRFFDADRIRQCLSCCDESAALIDPVRSPALMASVESFRANALLKLIQNGEPCDEERL AAHAEAALALLPGVEHTSSRRSILQVAGEGMLAARHDERAAGYFREALDAAASALLFAESREGRMQRIWEFRDTSALLAW SLLKLGDKENALVELEKGKGRFWRTDDEALSVAAIRSIVPSGGALLVANFSCREGAVIVVTGERIEIVWLPSFGKDRLMA LQRGGLDVASPGGWLRAYHMRNSEHEAWRRMIEETGETLYRELWEPVLDLLQDMGIADDAELVWFPQGGSGVFPVHAAWR QDSDGSKRWLIDRFTVRYAPDFQVLLSGESGVGCASGSLLLVANPCGDLDFSELECAWVRQYHTGRELKLLHGIDATPDA VLDAIGSAGIVHFSTHAIFDLNRPLCSALLLAGGEPLSLERLIPALEQKAPYLVVLSACETAMSRISSTPDEFLGFPAAF LHSGVRTVLATLWPVDDAATAVLTGRFYRELAVNNHSPSRALREAQNWIRSVTALELMELMREMKNAPPPAGPLAGRIRT ALRAFDPELKPFASPYYWAAFTISGKE >Mature_826_residues AAYDLLDKSENPHRAAELLLEAGSLVDGEAEPKKWAAFRQLYAQYSETSDPEAAITAYRDALSVWDPVLDRDAWVACHSG IGSLMVNLQPFGPKELDEAVMHLESAVQAQPFLSSMLAVLYRFRSAGDPRENWQKRVHHLRQALLLIDRDEEPCGWAAAN NELAIAIGDEPDADFGAALEERLRLHLESFGLLEGNKDDTWIDTCLSLSECYLFRGGIDDRENQEQAERYARLALDAAGT EVSGPLRAEVLLNLARVLMAPGRFFDADRIRQCLSCCDESAALIDPVRSPALMASVESFRANALLKLIQNGEPCDEERLA AHAEAALALLPGVEHTSSRRSILQVAGEGMLAARHDERAAGYFREALDAAASALLFAESREGRMQRIWEFRDTSALLAWS LLKLGDKENALVELEKGKGRFWRTDDEALSVAAIRSIVPSGGALLVANFSCREGAVIVVTGERIEIVWLPSFGKDRLMAL QRGGLDVASPGGWLRAYHMRNSEHEAWRRMIEETGETLYRELWEPVLDLLQDMGIADDAELVWFPQGGSGVFPVHAAWRQ DSDGSKRWLIDRFTVRYAPDFQVLLSGESGVGCASGSLLLVANPCGDLDFSELECAWVRQYHTGRELKLLHGIDATPDAV LDAIGSAGIVHFSTHAIFDLNRPLCSALLLAGGEPLSLERLIPALEQKAPYLVVLSACETAMSRISSTPDEFLGFPAAFL HSGVRTVLATLWPVDDAATAVLTGRFYRELAVNNHSPSRALREAQNWIRSVTALELMELMREMKNAPPPAGPLAGRIRTA LRAFDPELKPFASPYYWAAFTISGKE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 91143; Mature: 91012
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAYDLLDKSENPHRAAELLLEAGSLVDGEAEPKKWAAFRQLYAQYSETSDPEAAITAYR CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH DALSVWDPVLDRDAWVACHSGIGSLMVNLQPFGPKELDEAVMHLESAVQAQPFLSSMLAV HHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LYRFRSAGDPRENWQKRVHHLRQALLLIDRDEEPCGWAAANNELAIAIGDEPDADFGAAL HHHHHCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCEECCCCEEEEECCCCCCHHHHHH EERLRLHLESFGLLEGNKDDTWIDTCLSLSECYLFRGGIDDRENQEQAERYARLALDAAG HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC TEVSGPLRAEVLLNLARVLMAPGRFFDADRIRQCLSCCDESAALIDPVRSPALMASVESF CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHH RANALLKLIQNGEPCDEERLAAHAEAALALLPGVEHTSSRRSILQVAGEGMLAARHDERA HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEECCCHHH AGYFREALDAAASALLFAESREGRMQRIWEFRDTSALLAWSLLKLGDKENALVELEKGKG HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCC RFWRTDDEALSVAAIRSIVPSGGALLVANFSCREGAVIVVTGERIEIVWLPSFGKDRLMA CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCEEEEEECCCCCHHHHHH LQRGGLDVASPGGWLRAYHMRNSEHEAWRRMIEETGETLYRELWEPVLDLLQDMGIADDA HHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC ELVWFPQGGSGVFPVHAAWRQDSDGSKRWLIDRFTVRYAPDFQVLLSGESGVGCASGSLL CEEEEECCCCCCEEEHHHCCCCCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCEE LVANPCGDLDFSELECAWVRQYHTGRELKLLHGIDATPDAVLDAIGSAGIVHFSTHAIFD EEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCEEEE LNRPLCSALLLAGGEPLSLERLIPALEQKAPYLVVLSACETAMSRISSTPDEFLGFPAAF CCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCHHHHCCCHHH LHSGVRTVLATLWPVDDAATAVLTGRFYRELAVNNHSPSRALREAQNWIRSVTALELMEL HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH MREMKNAPPPAGPLAGRIRTALRAFDPELKPFASPYYWAAFTISGKE HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCC >Mature Secondary Structure AAYDLLDKSENPHRAAELLLEAGSLVDGEAEPKKWAAFRQLYAQYSETSDPEAAITAYR CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH DALSVWDPVLDRDAWVACHSGIGSLMVNLQPFGPKELDEAVMHLESAVQAQPFLSSMLAV HHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LYRFRSAGDPRENWQKRVHHLRQALLLIDRDEEPCGWAAANNELAIAIGDEPDADFGAAL HHHHHCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCEECCCCEEEEECCCCCCHHHHHH EERLRLHLESFGLLEGNKDDTWIDTCLSLSECYLFRGGIDDRENQEQAERYARLALDAAG HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC TEVSGPLRAEVLLNLARVLMAPGRFFDADRIRQCLSCCDESAALIDPVRSPALMASVESF CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHH RANALLKLIQNGEPCDEERLAAHAEAALALLPGVEHTSSRRSILQVAGEGMLAARHDERA HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEECCCHHH AGYFREALDAAASALLFAESREGRMQRIWEFRDTSALLAWSLLKLGDKENALVELEKGKG HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCC RFWRTDDEALSVAAIRSIVPSGGALLVANFSCREGAVIVVTGERIEIVWLPSFGKDRLMA CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCEEEEEECCCCCHHHHHH LQRGGLDVASPGGWLRAYHMRNSEHEAWRRMIEETGETLYRELWEPVLDLLQDMGIADDA HHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC ELVWFPQGGSGVFPVHAAWRQDSDGSKRWLIDRFTVRYAPDFQVLLSGESGVGCASGSLL CEEEEECCCCCCEEEHHHCCCCCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCEE LVANPCGDLDFSELECAWVRQYHTGRELKLLHGIDATPDAVLDAIGSAGIVHFSTHAIFD EEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCEEEE LNRPLCSALLLAGGEPLSLERLIPALEQKAPYLVVLSACETAMSRISSTPDEFLGFPAAF CCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCHHHHCCCHHH LHSGVRTVLATLWPVDDAATAVLTGRFYRELAVNNHSPSRALREAQNWIRSVTALELMEL HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH MREMKNAPPPAGPLAGRIRTALRAFDPELKPFASPYYWAAFTISGKE HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA