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The map label for this gene is rnhB

Identifier: 119355888

GI number: 119355888

Start: 39180

End: 39797

Strand: Reverse

Name: rnhB

Synonym: Cpha266_0038

Alternate gene names: 119355888

Gene position: 39797-39180 (Counterclockwise)

Preceding gene: 119355889

Following gene: 119355887

Centisome position: 1.27

GC content: 52.75

Gene sequence:

>618_bases
ATGACCACCGACTACGAATATTCTCTTTGGCCAACCCTGTCACTCATCTCGGGCATTGACGAAGCAGGTCGCGGCCCTCT
GGCTGGCCCTGTCGTCGCCGCTGCCGTTATTTTCCCCCGCTGGTTCAGACCGCGGCATGCCGGTCTGGACAAGCTGGACG
ACTCAAAAAAACTCTCGCCAAATCTCAGGGAACAGCTTGCTCCGACCATCAAAACATTTGCCGCATTCTGGGCGGTTGCC
GTTATTGAGCCCGACATCATTGACCGCATCAACATTTTTCAGGCAACCATGCAGGCAATGAACAATGCTGTCGCATCCCT
CCATCAGCCGCCGGAACTTATTCTTGTTGACGGCAACAGGTTCATGCCGAACGCTCCGATACCCTATGAAACCATCGTCA
AAGGCGACGCAAAAGTTTTTTCAATCGCCGCCGCCTCTGTTCTTGCCAAAACCCATCGAGACGCAATCATGACGGCTTAC
GGCAAGGAGTACCCCGAATATGGCTTTGAACGGCACTTTGGCTATCCGACAGCAAGCCACATCAAAGCGATCGAAACATT
CGGACGCACTCCTGTTCACCGAAAGAGCTTCCGACTCAAACAACTTGGAGAAAAATAA

Upstream 100 bases:

>100_bases
GAAAATCGTTCGACCCTGCCTGCCGCAGGAACCATTGCAATGAATATCTGCAACTGTCAGAACAGTAAAACAACAGCTAA
CCGCATCAGACCGTATCGTC

Downstream 100 bases:

>100_bases
CCCTTCGCCATGAGCTCAGACCCTCACATGCTCGGTATCCAGGGGGAACAAATCGCTGCGGCATACCTGTCGAGGCATGG
GTACCGGATTATCCAACGCA

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MTTDYEYSLWPTLSLISGIDEAGRGPLAGPVVAAAVIFPRWFRPRHAGLDKLDDSKKLSPNLREQLAPTIKTFAAFWAVA
VIEPDIIDRINIFQATMQAMNNAVASLHQPPELILVDGNRFMPNAPIPYETIVKGDAKVFSIAAASVLAKTHRDAIMTAY
GKEYPEYGFERHFGYPTASHIKAIETFGRTPVHRKSFRLKQLGEK

Sequences:

>Translated_205_residues
MTTDYEYSLWPTLSLISGIDEAGRGPLAGPVVAAAVIFPRWFRPRHAGLDKLDDSKKLSPNLREQLAPTIKTFAAFWAVA
VIEPDIIDRINIFQATMQAMNNAVASLHQPPELILVDGNRFMPNAPIPYETIVKGDAKVFSIAAASVLAKTHRDAIMTAY
GKEYPEYGFERHFGYPTASHIKAIETFGRTPVHRKSFRLKQLGEK
>Mature_204_residues
TTDYEYSLWPTLSLISGIDEAGRGPLAGPVVAAAVIFPRWFRPRHAGLDKLDDSKKLSPNLREQLAPTIKTFAAFWAVAV
IEPDIIDRINIFQATMQAMNNAVASLHQPPELILVDGNRFMPNAPIPYETIVKGDAKVFSIAAASVLAKTHRDAIMTAYG
KEYPEYGFERHFGYPTASHIKAIETFGRTPVHRKSFRLKQLGEK

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family

Homologues:

Organism=Escherichia coli, GI1786380, Length=189, Percent_Identity=48.6772486772487, Blast_Score=165, Evalue=2e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNH2_CHLPD (A1BCI1)

Other databases:

- EMBL:   CP000492
- RefSeq:   YP_910532.1
- ProteinModelPortal:   A1BCI1
- SMR:   A1BCI1
- STRING:   A1BCI1
- GeneID:   4568926
- GenomeReviews:   CP000492_GR
- KEGG:   cph:Cpha266_0038
- NMPDR:   fig|290317.7.peg.35
- eggNOG:   COG0164
- HOGENOM:   HBG584843
- OMA:   RLGPTPI
- ProtClustDB:   PRK00015
- GO:   GO:0005737
- HAMAP:   MF_00052_B
- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337
- PANTHER:   PTHR10954

Pfam domain/function: PF01351 RNase_HII; SSF53098 RNaseH_fold

EC number: =3.1.26.4

Molecular weight: Translated: 22824; Mature: 22692

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTDYEYSLWPTLSLISGIDEAGRGPLAGPVVAAAVIFPRWFRPRHAGLDKLDDSKKLSP
CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCC
NLREQLAPTIKTFAAFWAVAVIEPDIIDRINIFQATMQAMNNAVASLHQPPELILVDGNR
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCE
FMPNAPIPYETIVKGDAKVFSIAAASVLAKTHRDAIMTAYGKEYPEYGFERHFGYPTASH
ECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHH
IKAIETFGRTPVHRKSFRLKQLGEK
HHHHHHHCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
TTDYEYSLWPTLSLISGIDEAGRGPLAGPVVAAAVIFPRWFRPRHAGLDKLDDSKKLSP
CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCC
NLREQLAPTIKTFAAFWAVAVIEPDIIDRINIFQATMQAMNNAVASLHQPPELILVDGNR
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCE
FMPNAPIPYETIVKGDAKVFSIAAASVLAKTHRDAIMTAYGKEYPEYGFERHFGYPTASH
ECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHH
IKAIETFGRTPVHRKSFRLKQLGEK
HHHHHHHCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA