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The map label for this gene is flgD [H]

Identifier: 118581833

GI number: 118581833

Start: 3795633

End: 3796295

Strand: Direct

Name: flgD [H]

Synonym: Ppro_3433

Alternate gene names: 118581833

Gene position: 3795633-3796295 (Clockwise)

Preceding gene: 118581832

Following gene: 118581834

Centisome position: 94.7

GC content: 52.64

Gene sequence:

>663_bases
ATGATCACAAGTATAACATCGGCAACCGACTCCACCACGACTTCCGCCGCGATCAAGTCGTCCCTGGGCATGGATTCCAG
CGATTTTTTACAACTGTTCATCGCACAGATGCAATACCAGGACCCTCTGGCGCCTACGGATGCCACGGCCATGATGAACC
AGCTCTCACAACTATCGCTGGTTGAACAATCGTATAACCAGACGACTGCACTAAGCAACCTCTTGGCGGCACAGAACAAC
TCCTTAAGCATGGGATCAGTTTCATTCATCGGTAAAACAGTCAAGGCCAACGGAGATGACATCGTCTTTGACGGCACTTC
ATCCCCATCCCTGCAGTATAACCTGTCATCAGCTTCAGCCGCGACAACACTCACCATCTCCGATTCTTCGGGCGAGAGTG
TCAGAACTGTGTCCCTCGGTGCGCAATCAACGGGAGATAACAGCTATACTTGGGACGGTTGCGATAACAGCGGAAACAAA
CTTTCCGCCGGCGCGTACACCTTTTCCGTTTCGGCAAAAACCGGCAGTGGAGCTTCTGTGACGGCAAAAACCTACACGAC
GGGAGTTATTGACGGTGTCAACCTTACAAGCACGACCCCGTACCTCTCCATAGGGACGGTCTCTGTTCCGTTGACGGACG
TGCTCAACGTCAGTGGGGCATAG

Upstream 100 bases:

>100_bases
CCAGAGCGACACACCAGTTTTCCCGAACAAAGCGGTGTATCTGGCATCAGAGGAACATTCGATGCTTGATGTTCATTTCT
AGAAAGGACGGTGAATTCGT

Downstream 100 bases:

>100_bases
ACTATGGTTGACTCTATTTTTTTCCCGAATCCGGTTCAACCGGGCAAGACCGACCGCACACAACTATCCAAGAGCAACGG
ATCGGATAGGGTCACCGGTC

Product: flagellar hook capping protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MITSITSATDSTTTSAAIKSSLGMDSSDFLQLFIAQMQYQDPLAPTDATAMMNQLSQLSLVEQSYNQTTALSNLLAAQNN
SLSMGSVSFIGKTVKANGDDIVFDGTSSPSLQYNLSSASAATTLTISDSSGESVRTVSLGAQSTGDNSYTWDGCDNSGNK
LSAGAYTFSVSAKTGSGASVTAKTYTTGVIDGVNLTSTTPYLSIGTVSVPLTDVLNVSGA

Sequences:

>Translated_220_residues
MITSITSATDSTTTSAAIKSSLGMDSSDFLQLFIAQMQYQDPLAPTDATAMMNQLSQLSLVEQSYNQTTALSNLLAAQNN
SLSMGSVSFIGKTVKANGDDIVFDGTSSPSLQYNLSSASAATTLTISDSSGESVRTVSLGAQSTGDNSYTWDGCDNSGNK
LSAGAYTFSVSAKTGSGASVTAKTYTTGVIDGVNLTSTTPYLSIGTVSVPLTDVLNVSGA
>Mature_220_residues
MITSITSATDSTTTSAAIKSSLGMDSSDFLQLFIAQMQYQDPLAPTDATAMMNQLSQLSLVEQSYNQTTALSNLLAAQNN
SLSMGSVSFIGKTVKANGDDIVFDGTSSPSLQYNLSSASAATTLTISDSSGESVRTVSLGAQSTGDNSYTWDGCDNSGNK
LSAGAYTFSVSAKTGSGASVTAKTYTTGVIDGVNLTSTTPYLSIGTVSVPLTDVLNVSGA

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=188, Percent_Identity=30.8510638297872, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 22492; Mature: 22492

Theoretical pI: Translated: 3.85; Mature: 3.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITSITSATDSTTTSAAIKSSLGMDSSDFLQLFIAQMQYQDPLAPTDATAMMNQLSQLSL
CCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
VEQSYNQTTALSNLLAAQNNSLSMGSVSFIGKTVKANGDDIVFDGTSSPSLQYNLSSASA
HHHHCCHHHHHHHHHHHCCCCCCCCCHHHHEEEEECCCCEEEEECCCCCCEEEEECCCCC
ATTLTISDSSGESVRTVSLGAQSTGDNSYTWDGCDNSGNKLSAGAYTFSVSAKTGSGASV
EEEEEEECCCCCEEEEEEECCCCCCCCCEEECCCCCCCCEEECCEEEEEEECCCCCCCEE
TAKTYTTGVIDGVNLTSTTPYLSIGTVSVPLTDVLNVSGA
EEEEEEEEEECCCCCCCCCCEEEECEEECCHHHHHCCCCC
>Mature Secondary Structure
MITSITSATDSTTTSAAIKSSLGMDSSDFLQLFIAQMQYQDPLAPTDATAMMNQLSQLSL
CCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
VEQSYNQTTALSNLLAAQNNSLSMGSVSFIGKTVKANGDDIVFDGTSSPSLQYNLSSASA
HHHHCCHHHHHHHHHHHCCCCCCCCCHHHHEEEEECCCCEEEEECCCCCCEEEEECCCCC
ATTLTISDSSGESVRTVSLGAQSTGDNSYTWDGCDNSGNKLSAGAYTFSVSAKTGSGASV
EEEEEEECCCCCEEEEEEECCCCCCCCCEEECCCCCCCCEEECCEEEEEEECCCCCCCEE
TAKTYTTGVIDGVNLTSTTPYLSIGTVSVPLTDVLNVSGA
EEEEEEEEEECCCCCCCCCCEEEECEEECCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]