| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is fliF [H]
Identifier: 118581826
GI number: 118581826
Start: 3788062
End: 3789648
Strand: Direct
Name: fliF [H]
Synonym: Ppro_3426
Alternate gene names: 118581826
Gene position: 3788062-3789648 (Clockwise)
Preceding gene: 118581825
Following gene: 118581827
Centisome position: 94.51
GC content: 54.32
Gene sequence:
>1587_bases ATGCCTGAAGGATTACAGAGACTCATAGAGCCTTTCATGGCCCTCTCCCCTGGCAAACGCATGCTGATTGCCGGGGTGGC TATCCTCTCGGTTGCCGCATTTGCGGTTCTCATATTCGTGGCAAACCGCGTTGACTACCGCCCCTTGTTTACGAATCTGA GCACAGAAGATGCTGCCGAAATAGTCAAGAAACTGAAGGACAACAAGACCCCCTACCAGATTACCGCTGACGGCAAGGGT ATCATGGTGCCGGCTGATCTGGTCTACGAGCAACGCCTCGCCCTGGCGTCCGAAGGTCTGCCCCAGGGCGGAGGCGTAGG CTTTGAGATTTTTGACCGAAAAAACTTCGGCATGACAGAGTTCGTCCAAAAAATCAACTACCAGCGCGCCCTTCAGGGAG AACTCTCTCGTACAATCTCGCAACTGAACGGCGTTGAGCAGGCCCGCATCCATCTTGTTATTCCTGAAAAATCACTCTTC AAGGAAAACGAGAAACCATCCACCGCCTCGATTGTACTTAAAATGAAGTCAGGCCGTTCCCTCCGCCAAAACGAAGTCCA GGGAATCGTGCATCTGGTCGCCTCGTCAATCGAGGGGATGGAGGCTGATCAGGTCACGGTACTCGACAGCCGTGGCAAGG TTCTCAACAAGGGGGGGGGGGACCCAGATCCAACATCCAAGGCCACCTCCGTCATGCAGGAGACCCAGCGGATTTATGAA AAAAACGTCGAAGAACGTATCCAGTCCATGCTGGACCCCGTCGTCGGTTCCGGCAGAGCCATTGCTCGTGTTTCGGCGCT GTTCGACTTTAAGCAGGTTGAACGACTCGAGGAAAAGTTCGACCCCGAGAGCATAGCGGTCAGGAGCGAACAGCGTTCCG AGGAGAAAGGTGCGACAGCCGTCAATGCAGCAGGGGTACCCGGGGTGCAGACAAACCTTGGGAGAACTGGGGCGGGCGGA GCCACGCAAGCCGGTGGTGCCGCAAAAAACGACGAGACGCTTAATTACGAGGTCAGCCGTACCACGGCCAAGATTATCGA ACCGGTGGGTGCGCTCAGCAGATTATCAGTTGCCGTGCTGGTCGATGGCAAGTATGCGTTGCCAACCGCAGTCAAGGATG GGCAAACCGCCACCCCCAAGTACATTCCCCGCTCACCCGAGGAATTACAGAAAATAGAAGCACTTGTGAAAAGCGCCGTG GGATTCAATGCCGAACGTGGCGACCAGCTGGCAATACAGAACATACCTTTTCAGGACACGGGCGAACTGGGCAATATCGA GACACAGAAGTGGTGGAACAACCCCTTTTTCATGTCGCTGTTCAAGAATCTGTTGATTGGACTCGGCTTCATGGCGTTGA TCATCTTTGTCATCCGGCCTCTGCTCGTGTCGCTTAAAATCGTGCGTCCATCTGCACGCGAATCCATAGAAACCGTCCAT GAAATATCGGACAAACTGACCTCGGCGGAACGTGCCCAGATTTCCATGCAGATGGCGGAACAGCAGAACCTGATAGACAC TGCAAAAAAGGATCCCTACCAGGTCGCCCAGATCCTTCAGAACTGGATCGGGGAAGACAGCAAGTAA
Upstream 100 bases:
>100_bases CATGAGGATGCAGTTGTAATGCTCACGGCACTCCGTATCTTTAAAAACGGTTGGTCACGCTGGAACCGCATCAACGTCGG AAAGGACGGGGCGACAGGTC
Downstream 100 bases:
>100_bases TACCGTATAAGCGAGGATTGGCAAGAAAACTATGACAGGTACCGACAAAGCTGCCATCCTGCTCCTCTATCTGGGTAACG AGGTTACCAGTCAGGTGTTC
Product: flagellar M-ring protein FliF
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 528; Mature: 527
Protein sequence:
>528_residues MPEGLQRLIEPFMALSPGKRMLIAGVAILSVAAFAVLIFVANRVDYRPLFTNLSTEDAAEIVKKLKDNKTPYQITADGKG IMVPADLVYEQRLALASEGLPQGGGVGFEIFDRKNFGMTEFVQKINYQRALQGELSRTISQLNGVEQARIHLVIPEKSLF KENEKPSTASIVLKMKSGRSLRQNEVQGIVHLVASSIEGMEADQVTVLDSRGKVLNKGGGDPDPTSKATSVMQETQRIYE KNVEERIQSMLDPVVGSGRAIARVSALFDFKQVERLEEKFDPESIAVRSEQRSEEKGATAVNAAGVPGVQTNLGRTGAGG ATQAGGAAKNDETLNYEVSRTTAKIIEPVGALSRLSVAVLVDGKYALPTAVKDGQTATPKYIPRSPEELQKIEALVKSAV GFNAERGDQLAIQNIPFQDTGELGNIETQKWWNNPFFMSLFKNLLIGLGFMALIIFVIRPLLVSLKIVRPSARESIETVH EISDKLTSAERAQISMQMAEQQNLIDTAKKDPYQVAQILQNWIGEDSK
Sequences:
>Translated_528_residues MPEGLQRLIEPFMALSPGKRMLIAGVAILSVAAFAVLIFVANRVDYRPLFTNLSTEDAAEIVKKLKDNKTPYQITADGKG IMVPADLVYEQRLALASEGLPQGGGVGFEIFDRKNFGMTEFVQKINYQRALQGELSRTISQLNGVEQARIHLVIPEKSLF KENEKPSTASIVLKMKSGRSLRQNEVQGIVHLVASSIEGMEADQVTVLDSRGKVLNKGGGDPDPTSKATSVMQETQRIYE KNVEERIQSMLDPVVGSGRAIARVSALFDFKQVERLEEKFDPESIAVRSEQRSEEKGATAVNAAGVPGVQTNLGRTGAGG ATQAGGAAKNDETLNYEVSRTTAKIIEPVGALSRLSVAVLVDGKYALPTAVKDGQTATPKYIPRSPEELQKIEALVKSAV GFNAERGDQLAIQNIPFQDTGELGNIETQKWWNNPFFMSLFKNLLIGLGFMALIIFVIRPLLVSLKIVRPSARESIETVH EISDKLTSAERAQISMQMAEQQNLIDTAKKDPYQVAQILQNWIGEDSK >Mature_527_residues PEGLQRLIEPFMALSPGKRMLIAGVAILSVAAFAVLIFVANRVDYRPLFTNLSTEDAAEIVKKLKDNKTPYQITADGKGI MVPADLVYEQRLALASEGLPQGGGVGFEIFDRKNFGMTEFVQKINYQRALQGELSRTISQLNGVEQARIHLVIPEKSLFK ENEKPSTASIVLKMKSGRSLRQNEVQGIVHLVASSIEGMEADQVTVLDSRGKVLNKGGGDPDPTSKATSVMQETQRIYEK NVEERIQSMLDPVVGSGRAIARVSALFDFKQVERLEEKFDPESIAVRSEQRSEEKGATAVNAAGVPGVQTNLGRTGAGGA TQAGGAAKNDETLNYEVSRTTAKIIEPVGALSRLSVAVLVDGKYALPTAVKDGQTATPKYIPRSPEELQKIEALVKSAVG FNAERGDQLAIQNIPFQDTGELGNIETQKWWNNPFFMSLFKNLLIGLGFMALIIFVIRPLLVSLKIVRPSARESIETVHE ISDKLTSAERAQISMQMAEQQNLIDTAKKDPYQVAQILQNWIGEDSK
Specific function: The M ring may be actively involved in energy transduction [H]
COG id: COG1766
COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fliF family [H]
Homologues:
Organism=Escherichia coli, GI1788248, Length=560, Percent_Identity=35, Blast_Score=269, Evalue=3e-73,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013556 - InterPro: IPR000067 - InterPro: IPR006182 [H]
Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]
EC number: NA
Molecular weight: Translated: 57754; Mature: 57623
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEGLQRLIEPFMALSPGKRMLIAGVAILSVAAFAVLIFVANRVDYRPLFTNLSTEDAAE CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHH IVKKLKDNKTPYQITADGKGIMVPADLVYEQRLALASEGLPQGGGVGFEIFDRKNFGMTE HHHHHHCCCCCEEEEECCCEEEECHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHH FVQKINYQRALQGELSRTISQLNGVEQARIHLVIPEKSLFKENEKPSTASIVLKMKSGRS HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHCCCCCCCCEEEEEEECCCCC LRQNEVQGIVHLVASSIEGMEADQVTVLDSRGKVLNKGGGDPDPTSKATSVMQETQRIYE HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEECCCCCCCCCHHHHHHHHHHHHHHHH KNVEERIQSMLDPVVGSGRAIARVSALFDFKQVERLEEKFDPESIAVRSEQRSEEKGATA HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHCCCCE VNAAGVPGVQTNLGRTGAGGATQAGGAAKNDETLNYEVSRTTAKIIEPVGALSRLSVAVL EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCEEEEE VDGKYALPTAVKDGQTATPKYIPRSPEELQKIEALVKSAVGFNAERGDQLAIQNIPFQDT ECCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC GELGNIETQKWWNNPFFMSLFKNLLIGLGFMALIIFVIRPLLVSLKIVRPSARESIETVH CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH EISDKLTSAERAQISMQMAEQQNLIDTAKKDPYQVAQILQNWIGEDSK HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure PEGLQRLIEPFMALSPGKRMLIAGVAILSVAAFAVLIFVANRVDYRPLFTNLSTEDAAE CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHH IVKKLKDNKTPYQITADGKGIMVPADLVYEQRLALASEGLPQGGGVGFEIFDRKNFGMTE HHHHHHCCCCCEEEEECCCEEEECHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHH FVQKINYQRALQGELSRTISQLNGVEQARIHLVIPEKSLFKENEKPSTASIVLKMKSGRS HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHCCCCCCCCEEEEEEECCCCC LRQNEVQGIVHLVASSIEGMEADQVTVLDSRGKVLNKGGGDPDPTSKATSVMQETQRIYE HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEECCCCCCCCCHHHHHHHHHHHHHHHH KNVEERIQSMLDPVVGSGRAIARVSALFDFKQVERLEEKFDPESIAVRSEQRSEEKGATA HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHCCCCE VNAAGVPGVQTNLGRTGAGGATQAGGAAKNDETLNYEVSRTTAKIIEPVGALSRLSVAVL EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCEEEEE VDGKYALPTAVKDGQTATPKYIPRSPEELQKIEALVKSAVGFNAERGDQLAIQNIPFQDT ECCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC GELGNIETQKWWNNPFFMSLFKNLLIGLGFMALIIFVIRPLLVSLKIVRPSARESIETVH CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH EISDKLTSAERAQISMQMAEQQNLIDTAKKDPYQVAQILQNWIGEDSK HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 1551848; 8224881 [H]