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The map label for this gene is rfaQ [H]

Identifier: 118581791

GI number: 118581791

Start: 3742558

End: 3743787

Strand: Reverse

Name: rfaQ [H]

Synonym: Ppro_3391

Alternate gene names: 118581791

Gene position: 3743787-3742558 (Counterclockwise)

Preceding gene: 118581792

Following gene: 118581790

Centisome position: 93.41

GC content: 38.62

Gene sequence:

>1230_bases
ATGAGTGACATTGATTTTATCCAAAAATTACCATTTTATTTGCGTATGTTAAATAAATTCACCTTTGCAGTCACATCAGC
ATACCGCTCCCTGCTATCATTCGGTTTCCAGCAAATGATGATAGTTGCGTGCAAGGTTGCAAATACCAGATACAGACTTC
AAAGCGAATCTATTGACAGCATTGTAATCGTGCAACTTGCCAATATTGGTGACGCAGTTCTTACTACTCCTATCATAAGC
GCGTTGTCCCAAAAATATCCTCATGCACACATTCATGTAATTACCGGCAGCGAAAACTCACTCGTATATGAAAATAATGA
GCATGTTAAAAGTACCCATTATATTAATAGTATAAAATATATCCGCCATAACCACATTTATGAGCCAGCCTGCAATGTTT
ACAATCGATTGCGCCTAGAAAGATTTGATTTGACGGTGGTTGTCAGGGCTGATTTATCTTTTATTACATTCATGCTAATG
GCTAACAATCTCGGCAAAGTGGCACTCTATAACATGGATAAACATCCTCAGCGCCGCATGTGGTTGAAATTTTTATCTAT
AAATAACAATTCATTCAAAATAAAACACAATGTAGAAGTGATTAATGACTCACTTAAATCTGTTGGAATTTATATCGGCG
AAACAATTCATCATAAATCAGAAATACCAATACCAGACTCTTCTTTGTCAGATATATTTGCTCTACTGTTAAAAAGATCA
ATCTCAGCAAACTTTGTCGTTTTTCATGTAAACACACCTTTCAAATACAGGAAATGGCCTGAACAAAGATTTGCCGAACT
GATAGACTACACAATCGATAAATGGGGATTTGACTGTGTATTGATTGGCGGCAAGAATGATGCAGAAGCGAGCAAAAAAG
TTTTGGCGTATTGCGCAAACAGAAGAAATGTCATATCAGTGGTTGGAGAATTAAATCTTTCTCAAACAGCGGCAATAATC
AAGTTATCACGGCTTTATGTAGGTAACGACAGTGGTCCCATGCATATTGCAGCGGCTGCAGAAACACCTGTTCTTGCCTT
TTTTGGCCCACAGACCCCTGCGCTTTTTCATCCATGGAAAACGAAATCACGCGTATTATTCAGTTCAAGAAAATGCAGTC
CATGCTGGCAGAAGTCATGTGTAAGTCCTGAAAACTACTGCATGATGGATATTGCTGCTCACGAGGCCCAGAAAGCACTT
GACTCAATTCTGACAGGGGGCAACAAATGA

Upstream 100 bases:

>100_bases
TGGTTCAGTTCTTACTGACTGGCAAACCATTAAAGTTCAAGCTTTATATGAACATCATGCTGGGAAGAGTTATTGGTTTC
AAAGAATTTTATATGTCGAA

Downstream 100 bases:

>100_bases
AAGTTTTAATGCTGAATCCTCCATTCCTCCCTAAATTTTCAAGAAGTTCTCGCAGTCCAGCTGTCACCAAAAGCGGCACA
ATTTATTATTCATTATGGCT

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MSDIDFIQKLPFYLRMLNKFTFAVTSAYRSLLSFGFQQMMIVACKVANTRYRLQSESIDSIVIVQLANIGDAVLTTPIIS
ALSQKYPHAHIHVITGSENSLVYENNEHVKSTHYINSIKYIRHNHIYEPACNVYNRLRLERFDLTVVVRADLSFITFMLM
ANNLGKVALYNMDKHPQRRMWLKFLSINNNSFKIKHNVEVINDSLKSVGIYIGETIHHKSEIPIPDSSLSDIFALLLKRS
ISANFVVFHVNTPFKYRKWPEQRFAELIDYTIDKWGFDCVLIGGKNDAEASKKVLAYCANRRNVISVVGELNLSQTAAII
KLSRLYVGNDSGPMHIAAAAETPVLAFFGPQTPALFHPWKTKSRVLFSSRKCSPCWQKSCVSPENYCMMDIAAHEAQKAL
DSILTGGNK

Sequences:

>Translated_409_residues
MSDIDFIQKLPFYLRMLNKFTFAVTSAYRSLLSFGFQQMMIVACKVANTRYRLQSESIDSIVIVQLANIGDAVLTTPIIS
ALSQKYPHAHIHVITGSENSLVYENNEHVKSTHYINSIKYIRHNHIYEPACNVYNRLRLERFDLTVVVRADLSFITFMLM
ANNLGKVALYNMDKHPQRRMWLKFLSINNNSFKIKHNVEVINDSLKSVGIYIGETIHHKSEIPIPDSSLSDIFALLLKRS
ISANFVVFHVNTPFKYRKWPEQRFAELIDYTIDKWGFDCVLIGGKNDAEASKKVLAYCANRRNVISVVGELNLSQTAAII
KLSRLYVGNDSGPMHIAAAAETPVLAFFGPQTPALFHPWKTKSRVLFSSRKCSPCWQKSCVSPENYCMMDIAAHEAQKAL
DSILTGGNK
>Mature_408_residues
SDIDFIQKLPFYLRMLNKFTFAVTSAYRSLLSFGFQQMMIVACKVANTRYRLQSESIDSIVIVQLANIGDAVLTTPIISA
LSQKYPHAHIHVITGSENSLVYENNEHVKSTHYINSIKYIRHNHIYEPACNVYNRLRLERFDLTVVVRADLSFITFMLMA
NNLGKVALYNMDKHPQRRMWLKFLSINNNSFKIKHNVEVINDSLKSVGIYIGETIHHKSEIPIPDSSLSDIFALLLKRSI
SANFVVFHVNTPFKYRKWPEQRFAELIDYTIDKWGFDCVLIGGKNDAEASKKVLAYCANRRNVISVVGELNLSQTAAIIK
LSRLYVGNDSGPMHIAAAAETPVLAFFGPQTPALFHPWKTKSRVLFSSRKCSPCWQKSCVSPENYCMMDIAAHEAQKALD
SILTGGNK

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=294, Percent_Identity=22.7891156462585, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1790050, Length=112, Percent_Identity=35.7142857142857, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 46421; Mature: 46290

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDIDFIQKLPFYLRMLNKFTFAVTSAYRSLLSFGFQQMMIVACKVANTRYRLQSESIDS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCE
IVIVQLANIGDAVLTTPIISALSQKYPHAHIHVITGSENSLVYENNEHVKSTHYINSIKY
EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCCCHHHHHHHHHH
IRHNHIYEPACNVYNRLRLERFDLTVVVRADLSFITFMLMANNLGKVALYNMDKHPQRRM
HHHCCCCCHHHHHHHHHEEEEEEEEEEEECCHHHHHHHHHHCCCCCEEEECCCCCHHHHH
WLKFLSINNNSFKIKHNVEVINDSLKSVGIYIGETIHHKSEIPIPDSSLSDIFALLLKRS
EEEEEEECCCEEEEEECHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHHHHHHHHHHC
ISANFVVFHVNTPFKYRKWPEQRFAELIDYTIDKWGFDCVLIGGKNDAEASKKVLAYCAN
CCCCEEEEEECCCCHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHC
RRNVISVVGELNLSQTAAIIKLSRLYVGNDSGPMHIAAAAETPVLAFFGPQTPALFHPWK
CCCEEEHEECCCCHHHHHHEEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCEECCCC
TKSRVLFSSRKCSPCWQKSCVSPENYCMMDIAAHEAQKALDSILTGGNK
CCCEEEECCCCCCHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDIDFIQKLPFYLRMLNKFTFAVTSAYRSLLSFGFQQMMIVACKVANTRYRLQSESIDS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCE
IVIVQLANIGDAVLTTPIISALSQKYPHAHIHVITGSENSLVYENNEHVKSTHYINSIKY
EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCCCHHHHHHHHHH
IRHNHIYEPACNVYNRLRLERFDLTVVVRADLSFITFMLMANNLGKVALYNMDKHPQRRM
HHHCCCCCHHHHHHHHHEEEEEEEEEEEECCHHHHHHHHHHCCCCCEEEECCCCCHHHHH
WLKFLSINNNSFKIKHNVEVINDSLKSVGIYIGETIHHKSEIPIPDSSLSDIFALLLKRS
EEEEEEECCCEEEEEECHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHHHHHHHHHHC
ISANFVVFHVNTPFKYRKWPEQRFAELIDYTIDKWGFDCVLIGGKNDAEASKKVLAYCAN
CCCCEEEEEECCCCHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHC
RRNVISVVGELNLSQTAAIIKLSRLYVGNDSGPMHIAAAAETPVLAFFGPQTPALFHPWK
CCCEEEHEECCCCHHHHHHEEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCEECCCC
TKSRVLFSSRKCSPCWQKSCVSPENYCMMDIAAHEAQKALDSILTGGNK
CCCEEEECCCCCCHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA