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The map label for this gene is rfbH [H]

Identifier: 118581748

GI number: 118581748

Start: 3695559

End: 3696920

Strand: Reverse

Name: rfbH [H]

Synonym: Ppro_3348

Alternate gene names: 118581748

Gene position: 3696920-3695559 (Counterclockwise)

Preceding gene: 118581749

Following gene: 118581747

Centisome position: 92.24

GC content: 53.74

Gene sequence:

>1362_bases
GTGAACAGCAACGATACACAGGAACAGGCATTGCGAAGCGAAGCGATTCGTGCTGCCATTGCCCACTACAGTCACGCCCA
TGCTGCACTAAAATCGTACCGTCCCGGCGAGCGCATTCCTTACGCCGCACGCGTCTTTGATGAAAAGGAAATTGCCAATC
TGGTTGACTCTGCGCTGGATTTCTGGCTGACCAGCGGACGATTCGCCGCACGATTTGAACGGGAATTTTCCTCTTTCGTC
GGCGTCAGGCACACCATGCTGACCAACTCTGGCTCATCGGCAAACCTGCTGGCGTTCATGGCCCTTACCTCACCAAGCCT
GAAAGAGCGGCGCATCAGGCCGGGAGACGAGATTGTAACAGTGGCCGCTGGTTTTCCCACCACAGTTTCGCCAATCATCC
AATACGGGGCAGTACCTGTATTCGTCGACGTAACCCTGCCCGAATACAACATAGATACGGCTATGCTCGAAGCCGCTCTT
TCTTCCAGAACCAAGGCGGTCATGGTAGCCCATACTTTGGGTAATCCGTTTGACATAGCGAAGGTCAGCGGGTTCTGCGT
CCGGCACGGACTCTGGCTGATCGAAGACAACTGCGACGCACTAGGGTCACGATACTGCCTCGATGGCGTCTGGGGCTTCA
CAGGGAGTTTCGGCGACCTTGCCACATCCAGTTTCTACCCTCCGCACCACATGACCATGGGTGAGGGAGGAGCCGTCTAC
ACCAATGACCCGCACCTGAAGCGCTTGGTGGAATCGTTCCGCGATTGGGGACGCGATTGCTGGTGTCCCTCTGGCCAAGA
CAATACCTGTGGTAAACGTTTTGCGAAACAGTACGGAGAGCTTCCTCCGGGCTACGATCACAAGTATGTCTATTCCCATT
TCGGTTATAATCTTAAGTTAACCGATATGCAGGCCGCCATTGGTTGTGCACAGCTTGAAAAACTTCCCACGTTCATCGAT
GCGCGCAAAAAGAACTGGTGCAAACTGCGTGAGGGGCTCAGCGACATGGAAGACAGCCTGATCCTCCCCGGCACCACAAG
AGACTCTGATCCCTCCTGGTTCGGTTTTCTGCTGACAATCCGTGAAAATACGGCCTTCAATCGAGATGAACTGGTCAATT
ACCTGGAGTCAAGGGGTATCCAAACACGGATGCTGTTTGCCGGTAATCTGATCAAGCATCCCTGTTTTGATGAGATGCGC
GCAGGCGGAACGGGATACAGGGTTGTTGGGGAACTGGCGATAACCGAACGCATCATGCGCGATACATTTTGGATTGGGGT
CTATCCGGGTATGACAGAGGAAATGATTGCGTATATGCTTGATACCATCCGGGCATTCATCAAGCGTGGCGGATCGACAT
GA

Upstream 100 bases:

>100_bases
CTGGACCCGTGCCTATCGTTCGGGACACGATATGCGGTCAAAAAGCCTTGAACAGATCCAGGCCTTTCTGTAGCACCATT
TTCCACAGAAGGGGAGCCAT

Downstream 100 bases:

>100_bases
CTTTTATACATACAAGAATTTCAGGTTGCCTCGAGATCGTTCCTGTTTGTTTCCAGGACGAACGTGGCAGGTTCGTCAAA
ACCTACAACGAAAAAACGTT

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MNSNDTQEQALRSEAIRAAIAHYSHAHAALKSYRPGERIPYAARVFDEKEIANLVDSALDFWLTSGRFAARFEREFSSFV
GVRHTMLTNSGSSANLLAFMALTSPSLKERRIRPGDEIVTVAAGFPTTVSPIIQYGAVPVFVDVTLPEYNIDTAMLEAAL
SSRTKAVMVAHTLGNPFDIAKVSGFCVRHGLWLIEDNCDALGSRYCLDGVWGFTGSFGDLATSSFYPPHHMTMGEGGAVY
TNDPHLKRLVESFRDWGRDCWCPSGQDNTCGKRFAKQYGELPPGYDHKYVYSHFGYNLKLTDMQAAIGCAQLEKLPTFID
ARKKNWCKLREGLSDMEDSLILPGTTRDSDPSWFGFLLTIRENTAFNRDELVNYLESRGIQTRMLFAGNLIKHPCFDEMR
AGGTGYRVVGELAITERIMRDTFWIGVYPGMTEEMIAYMLDTIRAFIKRGGST

Sequences:

>Translated_453_residues
MNSNDTQEQALRSEAIRAAIAHYSHAHAALKSYRPGERIPYAARVFDEKEIANLVDSALDFWLTSGRFAARFEREFSSFV
GVRHTMLTNSGSSANLLAFMALTSPSLKERRIRPGDEIVTVAAGFPTTVSPIIQYGAVPVFVDVTLPEYNIDTAMLEAAL
SSRTKAVMVAHTLGNPFDIAKVSGFCVRHGLWLIEDNCDALGSRYCLDGVWGFTGSFGDLATSSFYPPHHMTMGEGGAVY
TNDPHLKRLVESFRDWGRDCWCPSGQDNTCGKRFAKQYGELPPGYDHKYVYSHFGYNLKLTDMQAAIGCAQLEKLPTFID
ARKKNWCKLREGLSDMEDSLILPGTTRDSDPSWFGFLLTIRENTAFNRDELVNYLESRGIQTRMLFAGNLIKHPCFDEMR
AGGTGYRVVGELAITERIMRDTFWIGVYPGMTEEMIAYMLDTIRAFIKRGGST
>Mature_453_residues
MNSNDTQEQALRSEAIRAAIAHYSHAHAALKSYRPGERIPYAARVFDEKEIANLVDSALDFWLTSGRFAARFEREFSSFV
GVRHTMLTNSGSSANLLAFMALTSPSLKERRIRPGDEIVTVAAGFPTTVSPIIQYGAVPVFVDVTLPEYNIDTAMLEAAL
SSRTKAVMVAHTLGNPFDIAKVSGFCVRHGLWLIEDNCDALGSRYCLDGVWGFTGSFGDLATSSFYPPHHMTMGEGGAVY
TNDPHLKRLVESFRDWGRDCWCPSGQDNTCGKRFAKQYGELPPGYDHKYVYSHFGYNLKLTDMQAAIGCAQLEKLPTFID
ARKKNWCKLREGLSDMEDSLILPGTTRDSDPSWFGFLLTIRENTAFNRDELVNYLESRGIQTRMLFAGNLIKHPCFDEMR
AGGTGYRVVGELAITERIMRDTFWIGVYPGMTEEMIAYMLDTIRAFIKRGGST

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=355, Percent_Identity=27.887323943662, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI2367285, Length=318, Percent_Identity=25.1572327044025, Blast_Score=89, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 50649; Mature: 50649

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSNDTQEQALRSEAIRAAIAHYSHAHAALKSYRPGERIPYAARVFDEKEIANLVDSALD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHH
FWLTSGRFAARFEREFSSFVGVRHTMLTNSGSSANLLAFMALTSPSLKERRIRPGDEIVT
HHHCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEECCCCCHHHCCCCCCCCEEE
VAAGFPTTVSPIIQYGAVPVFVDVTLPEYNIDTAMLEAALSSRTKAVMVAHTLGNPFDIA
EECCCCCHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHH
KVSGFCVRHGLWLIEDNCDALGSRYCLDGVWGFTGSFGDLATSSFYPPHHMTMGEGGAVY
HHHHHHHHCCCEEEECCHHHHCCHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEE
TNDPHLKRLVESFRDWGRDCWCPSGQDNTCGKRFAKQYGELPPGYDHKYVYSHFGYNLKL
CCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEEE
TDMQAAIGCAQLEKLPTFIDARKKNWCKLREGLSDMEDSLILPGTTRDSDPSWFGFLLTI
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCEECCCCCCCCCCCEEEEEEEE
RENTAFNRDELVNYLESRGIQTRMLFAGNLIKHPCFDEMRAGGTGYRVVGELAITERIMR
ECCCCCCHHHHHHHHHHCCCEEEEEHHCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHH
DTFWIGVYPGMTEEMIAYMLDTIRAFIKRGGST
HHEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNSNDTQEQALRSEAIRAAIAHYSHAHAALKSYRPGERIPYAARVFDEKEIANLVDSALD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHH
FWLTSGRFAARFEREFSSFVGVRHTMLTNSGSSANLLAFMALTSPSLKERRIRPGDEIVT
HHHCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEECCCCCHHHCCCCCCCCEEE
VAAGFPTTVSPIIQYGAVPVFVDVTLPEYNIDTAMLEAALSSRTKAVMVAHTLGNPFDIA
EECCCCCHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHH
KVSGFCVRHGLWLIEDNCDALGSRYCLDGVWGFTGSFGDLATSSFYPPHHMTMGEGGAVY
HHHHHHHHCCCEEEECCHHHHCCHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEE
TNDPHLKRLVESFRDWGRDCWCPSGQDNTCGKRFAKQYGELPPGYDHKYVYSHFGYNLKL
CCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEEE
TDMQAAIGCAQLEKLPTFIDARKKNWCKLREGLSDMEDSLILPGTTRDSDPSWFGFLLTI
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCEECCCCCCCCCCCEEEEEEEE
RENTAFNRDELVNYLESRGIQTRMLFAGNLIKHPCFDEMRAGGTGYRVVGELAITERIMR
ECCCCCCHHHHHHHHHHCCCEEEEEHHCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHH
DTFWIGVYPGMTEEMIAYMLDTIRAFIKRGGST
HHEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]