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The map label for this gene is yciR [C]

Identifier: 118581565

GI number: 118581565

Start: 3473333

End: 3475405

Strand: Direct

Name: yciR [C]

Synonym: Ppro_3164

Alternate gene names: 118581565

Gene position: 3473333-3475405 (Clockwise)

Preceding gene: 118581564

Following gene: 118581566

Centisome position: 86.66

GC content: 62.28

Gene sequence:

>2073_bases
ATGCAACGCCATACGATTTCCCCCCCATCCAGGCACCACGGCAACAGCACAGCTCCGGAAGCGCTTCCGGCGAATCGGAG
TCAGCAGCCGAACCTGGGCAGCGGACTCCCTCCTTTCGAATTGCAAGCGGGGCCACACGCCATCCACGGCCGGGAGAAGT
CATATTCCCGGAGCTACATTCAGTTCCGTCGCCAGGGGGAGCTGCAGGCACTGAACAAGGAGTTGCAGGCGGCCACCAGC
GACTTGCGGGAGGCGAACCGGAAGCTCGGCCAACGAGTTTTGGAGCTGGAACGGAGGAATCGGGAATCAGCCCATCAGGC
CAATGGGTACCTGCCGGGAAATGACCGGAGCATAGGCAGCATCATTATCGACCCGCACCTGCGAATCGGCGTCTTCAATC
CGGGCTGTGCCCGACTCTTCAGGCTGCGGCCTGAAGATGTGGGCCAGCCTGTAGACCGCCTCACCCGCACCATCTGGGAC
CGGGATGAGTTCTTGAGCGACATCCTGGCGGCATTCCAAAACGGTCTCCCCATCACGCGGGAAACCCGCCGCGGCAGGGA
GTCATGGTTGTTGGCCCATCTGGCCCCCGCATACGACCTGAAGGGCCGGGTGGAGGCGCTGATCGTCTACTTCAGCGACA
TTTCCCCATTCAAACAAGAGCAGGAGCGCAACCGGCTCCTGGCGCGGATGTTCCAAGAGAGCAACGAGGCGCAGCTCATA
ACCGGCGCCGACGGCCGGATCATGGGCAGCAACGACAGCTTCAGCCAGCTGACCGGTTACACGGGTGAAGAGATTGTCGG
CCGCACCACCCGGCGACTGCTGGCTGGCCAAAAATCGAAGGAGCTCTTCGCGACGCTGGCCGAAGCGCTGCGCAGTGGAA
ACCCCTGGCAGGGAGAGCTGCACATCAGAAACAAGGACGGAAATGTCCTTTCCACCTGGACAACCGCAACCCCCCTGAGA
GACGAACGACGGAAAACAATCAACTACACGGCCACGTTACTCGACGTTGCCGCTCGGGCAGGACGCGAACAGGACAACGA
GTACCGGGCCAACCACGACGCACTGACCGGACTCCTCAACCGCTTCAGCCTGATGCAGCGCCTGGCTCAATCGCTGGAGC
AGGCCAGGAGCGACGAGCACCACTTTGCGGTCCTGTTCATCGACCTGGACCGCTTCAAGGAGATCAATGACTCCCTGGGG
CACCACATGGGGGACCTGCTGCTGGTCGAGGTCGCCGCCCGCCTGGTTGCCGCGGTACGCGCCTCCGACATTGTTGCCCG
GCTGGGCGGTGACGAATTCGTGGTAGCGATGCCCCACATCCGGTCCGCCATCGATCCGGCCTTTCTGGCGGACAAGATAC
GGCGCGCCATCTCGCAACCTTTCCTGCTGGAGGGACACGAACTCCTCACCACCCCCAGCATCGGCATCAGCGTGTTTCCC
GATGATGGAGGAAACGTGGAGGAATTGCTCAAGAATGCCGATACCGCCATGTACCACGCCAAATCCCGGGGGCGGAACAA
CTACCAGTTCTTCATGCGGGAGATGCACGCCATCACCCGGGAGCGCCTCCTGCTTGAACATGACCTGCGCCTGGCGGTGG
AACGCAACGAGTTTATCCTGCACTTTCAGCCGCAGATTGACCTTGCGACCGGTTTGGTGATAGGTGTGAAGGCCATGCTG
CGCTGGCGGCACCCCCTGCGCGGCATCATCACCCCCGACAGGTTTATCTCCACTGCCGATGCCTCGGGACTGATCCTGCG
CATCGACCATCTCAGCCTGGAGATGGCATGCCGTCAGCTGGCGGCCACCATCTCCCTCGCCCACAGCATCGGCACGCAGG
TTGCCGCCAAGGGGATCGAAGCGGAGGCTCAGCTGAACCTGCTTGCCGCTCAACGGTGCGACGTGGGACAGGGATACCTT
TTCAGCCGTCCCCTTGCGGCGGACAGAATCGTGGAATTTATTCGCCGCCATGCCGGCCGGGCGGTGTGGGAGCGAAACGG
AACACCCCCGGGGATGGTGGCTGCTCCGTTTCTGGCGGAAACAGCGCCAGCAACCTTCAGCTCAGGAGAGTAG

Upstream 100 bases:

>100_bases
CAAACTGGATGTTTGTCGTACCCGCGCTCCCTGGCCGAGTTCACGACAGTTACCCGCCGGCAGCGCCCCCCAACCCCGCG
ACACCGAGGAGAGGAAGATT

Downstream 100 bases:

>100_bases
CATGCCAGCAGTAGATCCGATCAGTGAAGAGACAACCTCGCCCACCTGCAGCTACATCGTCGGCATCGGCGCCTCCGCCG
GAGGGCTGAACGCCCTGGAG

Product: PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 690; Mature: 690

Protein sequence:

>690_residues
MQRHTISPPSRHHGNSTAPEALPANRSQQPNLGSGLPPFELQAGPHAIHGREKSYSRSYIQFRRQGELQALNKELQAATS
DLREANRKLGQRVLELERRNRESAHQANGYLPGNDRSIGSIIIDPHLRIGVFNPGCARLFRLRPEDVGQPVDRLTRTIWD
RDEFLSDILAAFQNGLPITRETRRGRESWLLAHLAPAYDLKGRVEALIVYFSDISPFKQEQERNRLLARMFQESNEAQLI
TGADGRIMGSNDSFSQLTGYTGEEIVGRTTRRLLAGQKSKELFATLAEALRSGNPWQGELHIRNKDGNVLSTWTTATPLR
DERRKTINYTATLLDVAARAGREQDNEYRANHDALTGLLNRFSLMQRLAQSLEQARSDEHHFAVLFIDLDRFKEINDSLG
HHMGDLLLVEVAARLVAAVRASDIVARLGGDEFVVAMPHIRSAIDPAFLADKIRRAISQPFLLEGHELLTTPSIGISVFP
DDGGNVEELLKNADTAMYHAKSRGRNNYQFFMREMHAITRERLLLEHDLRLAVERNEFILHFQPQIDLATGLVIGVKAML
RWRHPLRGIITPDRFISTADASGLILRIDHLSLEMACRQLAATISLAHSIGTQVAAKGIEAEAQLNLLAAQRCDVGQGYL
FSRPLAADRIVEFIRRHAGRAVWERNGTPPGMVAAPFLAETAPATFSSGE

Sequences:

>Translated_690_residues
MQRHTISPPSRHHGNSTAPEALPANRSQQPNLGSGLPPFELQAGPHAIHGREKSYSRSYIQFRRQGELQALNKELQAATS
DLREANRKLGQRVLELERRNRESAHQANGYLPGNDRSIGSIIIDPHLRIGVFNPGCARLFRLRPEDVGQPVDRLTRTIWD
RDEFLSDILAAFQNGLPITRETRRGRESWLLAHLAPAYDLKGRVEALIVYFSDISPFKQEQERNRLLARMFQESNEAQLI
TGADGRIMGSNDSFSQLTGYTGEEIVGRTTRRLLAGQKSKELFATLAEALRSGNPWQGELHIRNKDGNVLSTWTTATPLR
DERRKTINYTATLLDVAARAGREQDNEYRANHDALTGLLNRFSLMQRLAQSLEQARSDEHHFAVLFIDLDRFKEINDSLG
HHMGDLLLVEVAARLVAAVRASDIVARLGGDEFVVAMPHIRSAIDPAFLADKIRRAISQPFLLEGHELLTTPSIGISVFP
DDGGNVEELLKNADTAMYHAKSRGRNNYQFFMREMHAITRERLLLEHDLRLAVERNEFILHFQPQIDLATGLVIGVKAML
RWRHPLRGIITPDRFISTADASGLILRIDHLSLEMACRQLAATISLAHSIGTQVAAKGIEAEAQLNLLAAQRCDVGQGYL
FSRPLAADRIVEFIRRHAGRAVWERNGTPPGMVAAPFLAETAPATFSSGE
>Mature_690_residues
MQRHTISPPSRHHGNSTAPEALPANRSQQPNLGSGLPPFELQAGPHAIHGREKSYSRSYIQFRRQGELQALNKELQAATS
DLREANRKLGQRVLELERRNRESAHQANGYLPGNDRSIGSIIIDPHLRIGVFNPGCARLFRLRPEDVGQPVDRLTRTIWD
RDEFLSDILAAFQNGLPITRETRRGRESWLLAHLAPAYDLKGRVEALIVYFSDISPFKQEQERNRLLARMFQESNEAQLI
TGADGRIMGSNDSFSQLTGYTGEEIVGRTTRRLLAGQKSKELFATLAEALRSGNPWQGELHIRNKDGNVLSTWTTATPLR
DERRKTINYTATLLDVAARAGREQDNEYRANHDALTGLLNRFSLMQRLAQSLEQARSDEHHFAVLFIDLDRFKEINDSLG
HHMGDLLLVEVAARLVAAVRASDIVARLGGDEFVVAMPHIRSAIDPAFLADKIRRAISQPFLLEGHELLTTPSIGISVFP
DDGGNVEELLKNADTAMYHAKSRGRNNYQFFMREMHAITRERLLLEHDLRLAVERNEFILHFQPQIDLATGLVIGVKAML
RWRHPLRGIITPDRFISTADASGLILRIDHLSLEMACRQLAATISLAHSIGTQVAAKGIEAEAQLNLLAAQRCDVGQGYL
FSRPLAADRIVEFIRRHAGRAVWERNGTPPGMVAAPFLAETAPATFSSGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=414, Percent_Identity=29.2270531400966, Blast_Score=171, Evalue=1e-43,
Organism=Escherichia coli, GI87081921, Length=476, Percent_Identity=30.0420168067227, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1788381, Length=342, Percent_Identity=30.9941520467836, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87081881, Length=291, Percent_Identity=29.553264604811, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1787802, Length=182, Percent_Identity=35.1648351648352, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI226510982, Length=235, Percent_Identity=25.9574468085106, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI87082007, Length=163, Percent_Identity=34.3558282208589, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI145693134, Length=193, Percent_Identity=35.2331606217617, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI87081977, Length=151, Percent_Identity=37.7483443708609, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1786584, Length=162, Percent_Identity=31.4814814814815, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=32.5153374233129, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788956, Length=153, Percent_Identity=34.640522875817, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1787816, Length=179, Percent_Identity=32.9608938547486, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=106, Percent_Identity=38.6792452830189, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1788085, Length=211, Percent_Identity=28.436018957346, Blast_Score=69, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 77201; Mature: 77201

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRHTISPPSRHHGNSTAPEALPANRSQQPNLGSGLPPFELQAGPHAIHGREKSYSRSYI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
QFRRQGELQALNKELQAATSDLREANRKLGQRVLELERRNRESAHQANGYLPGNDRSIGS
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCE
IIIDPHLRIGVFNPGCARLFRLRPEDVGQPVDRLTRTIWDRDEFLSDILAAFQNGLPITR
EEECCCEEEEECCCHHHHHHCCCCHHHCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCH
ETRRGRESWLLAHLAPAYDLKGRVEALIVYFSDISPFKQEQERNRLLARMFQESNEAQLI
HHHCCHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEE
TGADGRIMGSNDSFSQLTGYTGEEIVGRTTRRLLAGQKSKELFATLAEALRSGNPWQGEL
ECCCCEEECCCCCHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEE
HIRNKDGNVLSTWTTATPLRDERRKTINYTATLLDVAARAGREQDNEYRANHDALTGLLN
EEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHH
RFSLMQRLAQSLEQARSDEHHFAVLFIDLDRFKEINDSLGHHMGDLLLVEVAARLVAAVR
HHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASDIVARLGGDEFVVAMPHIRSAIDPAFLADKIRRAISQPFLLEGHELLTTPSIGISVFP
HHHHHHHCCCCCEEEECHHHHHHCCHHHHHHHHHHHHCCCEEECCCCEEECCCCCEEEEC
DDGGNVEELLKNADTAMYHAKSRGRNNYQFFMREMHAITRERLLLEHDLRLAVERNEFIL
CCCCCHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEE
HFQPQIDLATGLVIGVKAMLRWRHPLRGIITPDRFISTADASGLILRIDHLSLEMACRQL
EECCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCEEEEEEHHHHHHHHHHH
AATISLAHSIGTQVAAKGIEAEAQLNLLAAQRCDVGQGYLFSRPLAADRIVEFIRRHAGR
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHCC
AVWERNGTPPGMVAAPFLAETAPATFSSGE
HHHHCCCCCCCCEECCHHHHCCCCCCCCCC
>Mature Secondary Structure
MQRHTISPPSRHHGNSTAPEALPANRSQQPNLGSGLPPFELQAGPHAIHGREKSYSRSYI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
QFRRQGELQALNKELQAATSDLREANRKLGQRVLELERRNRESAHQANGYLPGNDRSIGS
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCE
IIIDPHLRIGVFNPGCARLFRLRPEDVGQPVDRLTRTIWDRDEFLSDILAAFQNGLPITR
EEECCCEEEEECCCHHHHHHCCCCHHHCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCH
ETRRGRESWLLAHLAPAYDLKGRVEALIVYFSDISPFKQEQERNRLLARMFQESNEAQLI
HHHCCHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEE
TGADGRIMGSNDSFSQLTGYTGEEIVGRTTRRLLAGQKSKELFATLAEALRSGNPWQGEL
ECCCCEEECCCCCHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEE
HIRNKDGNVLSTWTTATPLRDERRKTINYTATLLDVAARAGREQDNEYRANHDALTGLLN
EEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHH
RFSLMQRLAQSLEQARSDEHHFAVLFIDLDRFKEINDSLGHHMGDLLLVEVAARLVAAVR
HHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASDIVARLGGDEFVVAMPHIRSAIDPAFLADKIRRAISQPFLLEGHELLTTPSIGISVFP
HHHHHHHCCCCCEEEECHHHHHHCCHHHHHHHHHHHHCCCEEECCCCEEECCCCCEEEEC
DDGGNVEELLKNADTAMYHAKSRGRNNYQFFMREMHAITRERLLLEHDLRLAVERNEFIL
CCCCCHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEE
HFQPQIDLATGLVIGVKAMLRWRHPLRGIITPDRFISTADASGLILRIDHLSLEMACRQL
EECCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCEEEEEEHHHHHHHHHHH
AATISLAHSIGTQVAAKGIEAEAQLNLLAAQRCDVGQGYLFSRPLAADRIVEFIRRHAGR
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHCC
AVWERNGTPPGMVAAPFLAETAPATFSSGE
HHHHCCCCCCCCEECCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]