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The map label for this gene is ycbZ [H]

Identifier: 118581472

GI number: 118581472

Start: 3357756

End: 3360197

Strand: Reverse

Name: ycbZ [H]

Synonym: Ppro_3069

Alternate gene names: 118581472

Gene position: 3360197-3357756 (Counterclockwise)

Preceding gene: 118581473

Following gene: 118581471

Centisome position: 83.84

GC content: 61.92

Gene sequence:

>2442_bases
ATGGACCTTGACCGATACCGCATTCCCGTTGAACAACTCCGCTGGACCTGCGATACCTCCCTGCTGGACTTCACTTCCAC
CGAAGAACTGCCCGACCTTGACTACGCCATCGGCCAGAAGCGGGCCCTGCGCTCCATCGAATTCGGCCTGGAAATGGAGG
AAACCGGCTTCAACCTGTACATCGCGGGCGAAACCGGTACCGGCCGCGCATCCACCATCCGCACCATCCTCGGCAAACGG
GCGCAGCACGAGCCCCAGCCCAACGACTGGGTCTATGTCAACAACTTCAAGGACAGCCTGTCGGCGGTCTCGCTCTCCCT
GCCCGCCGGTCAGGGGGGGCAGTTGGCCAGCGACATGAAGGAGCTGGTGGATGCCTTCCGGAAGGAGATCCCCAAGGCCC
TGGAGAGCCCCGAGTACGAGTTCCGGCGTTCGGAAATACTGGAACAGTACCAGGCAGCCAACAACGAGCTGTTCCAGGCC
CTGGAGAAGGAGTCGGGCAAGCACGGCTTTGCCTTGCAGCGTACCGTTTCCGGGCTGGTGATCGTTCCCCAGAAGGAGGG
GCGCAACTATACCCAGGAGGAGTACGAGGCCCTGACCCAAAGGAAGCGGGACAAGCTCGACCAGACCGGCAAGAAGCTGA
CCGAGCGTCTCAACGAGGTACTCCGCCAGGTGCGGGAGAACGAAAAGGCCACCAAGGAGTTGCTCTCCCAGGCCGACCGC
GAACTGGGCATGTCATGTCTGGGACATCGCCTGGGCCCGCTGAAGGAAAAGTACGCCTCCCTGGAAAAGGTGCTGGCCTA
TTTGGAGGCGGTCCAGGAAGATATCCTCAACAACCTGGAAGACTTCAAGCCCCAGGCGGCCCAGCCCCAGATTCCGGGCA
TCAGGATGCCGCGCCAGGAGCCGAGCTTCGAACGCTACGACGTCAACCTGCTGGTGGACAACAGCGCCACGAAGGGCGCG
CCGGTGGTGTTCGAGGCCAACCCGACCTACAACAACCTGTTCGGCCGCATCGAGCATGTGATGCAGTACGGCGGCGTGGC
AGTGACCGACTTTACTATGATCCGCCCCGGCGCCCTGCATCGGGCCAACGGCGGCTACCTGGTCATCGATGCCCGCGAGG
TGCTGATCAATCCCTTTGTCTGGGACTCTCTCAAGCGCTGCATCCGCACCGGAGAAATCAGGATCGAGGATGTGCTGGAG
CAGTACCGCTTCATGACCATGGTGACGCTCAAGCCCGAGGCGGTGCAGCTCCAGGCCAAGATCATCATGATCGGCACCCC
CTGGATCTACTACCTGCTGTACTACCTGGATCCGGATTACCGCAAGTTTTTCAAGGTCAAGGCCGAGTTCGACAGCAGCG
TGATACGCTCCTCCGAAGTCATGCGCGACTATGCCCTCTTCGTGGCAACCCACTGCCGCTGCGAGAATCTGCTGCACTTC
GACCGCAGTGGCATGGCGCGCCTGCTGGAGTACACCGCCCGTATGGTTGAGGATCAGCACAGGCTCTCCTCGCAGTTCAT
GGAGATTTCCGATTTCATCCGCGAAGCCAGCTTCTGGGCCAAGAAGGACGGCCACTCCATCGTCTCGGGAGCCGCCGTGC
TGCGTGCCGCCGAGGAGAAGCTCTACCGCTTCAACCGCATCGAAGAGCGCATGCACGAGCTGTACGAGGACGGCATCATC
ATGGTGGATACGGACGGTGCCGTGGCCGGCCAGATCAACGGGCTGTCGGTGCTGGATCTGGGGGATCACACCTTCGGCCG
TCCCTCCCGCATAACCGCCAGCGTCTACACCGGCAAGGGGGGCATGGTCAACATCGAACGGGAGGCCAAGCTCTCCGGCC
CGATACACGACAAGGGGGTCATGATCCTGACCGGCTACCTGGGGAGCATCTTTGCCCTGGAGCGTCCCCTCTCCCTGTCC
GCGTCCATCTGTTTCGAACAGTCCTACTCCGGTATCGAGGGGGACAGCGCCTCGTCCACCGAATTGTACGCCCTGTTGTC
GGCACTGTCCGGCGTAGCGCTCAGCCAGGGGATCGCCGTTACCGGCAGCGTCAACCAGCGCGGTATCATCCAGCCCATCG
GCGGGGTCAATTTCAAGATCGAGGGATTCTATGCCGTCTGCAAGTCCCAGGGGCTGACCGGTCGGCAGGGGGTGATCATC
CCCAAGGCCAACGAACGGCACCTGATGCTGAACGACCAGGTGGTTGCGGCGGTTACGGCCGGCATGTTCAGCATCTGGAG
TGTGGAGACCATCGAGCAGGGCATCGAGATCCTGAGCGGTATGAAAGCCGGTGTGCGTGGCAAGAACGGCAGGTTTCCCA
AGGGCACGCTCTATCACCTGGTGGACGAGCGCCTGCGCCGCATGGCCGAGACGCTGGTCAAGAAAGATGAGAAGGGGAAG
AGCCGTGCGGCAAAGGGGCCACGCCGTCATACGCCTGCCTAG

Upstream 100 bases:

>100_bases
GGGAGTACGTTGCCGCGCGAGCCTGCCCGACCAGCCCCTGACTGACCGCAGGGCGCTTCCCGCACTGAACGCCTGCTCAC
CTCTGCCGAAGGAGTCGCCC

Downstream 100 bases:

>100_bases
CTTCAGGCCGGCCAGGAGGAGTCATGGGGATCAGGTGGAGGGAATCTCTCGCCATTGGTATTGAGGAGATCGACAGCCAG
CACCGGGAGTTGGTGGAGCA

Product: ATP-dependent protease

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 813; Mature: 813

Protein sequence:

>813_residues
MDLDRYRIPVEQLRWTCDTSLLDFTSTEELPDLDYAIGQKRALRSIEFGLEMEETGFNLYIAGETGTGRASTIRTILGKR
AQHEPQPNDWVYVNNFKDSLSAVSLSLPAGQGGQLASDMKELVDAFRKEIPKALESPEYEFRRSEILEQYQAANNELFQA
LEKESGKHGFALQRTVSGLVIVPQKEGRNYTQEEYEALTQRKRDKLDQTGKKLTERLNEVLRQVRENEKATKELLSQADR
ELGMSCLGHRLGPLKEKYASLEKVLAYLEAVQEDILNNLEDFKPQAAQPQIPGIRMPRQEPSFERYDVNLLVDNSATKGA
PVVFEANPTYNNLFGRIEHVMQYGGVAVTDFTMIRPGALHRANGGYLVIDAREVLINPFVWDSLKRCIRTGEIRIEDVLE
QYRFMTMVTLKPEAVQLQAKIIMIGTPWIYYLLYYLDPDYRKFFKVKAEFDSSVIRSSEVMRDYALFVATHCRCENLLHF
DRSGMARLLEYTARMVEDQHRLSSQFMEISDFIREASFWAKKDGHSIVSGAAVLRAAEEKLYRFNRIEERMHELYEDGII
MVDTDGAVAGQINGLSVLDLGDHTFGRPSRITASVYTGKGGMVNIEREAKLSGPIHDKGVMILTGYLGSIFALERPLSLS
ASICFEQSYSGIEGDSASSTELYALLSALSGVALSQGIAVTGSVNQRGIIQPIGGVNFKIEGFYAVCKSQGLTGRQGVII
PKANERHLMLNDQVVAAVTAGMFSIWSVETIEQGIEILSGMKAGVRGKNGRFPKGTLYHLVDERLRRMAETLVKKDEKGK
SRAAKGPRRHTPA

Sequences:

>Translated_813_residues
MDLDRYRIPVEQLRWTCDTSLLDFTSTEELPDLDYAIGQKRALRSIEFGLEMEETGFNLYIAGETGTGRASTIRTILGKR
AQHEPQPNDWVYVNNFKDSLSAVSLSLPAGQGGQLASDMKELVDAFRKEIPKALESPEYEFRRSEILEQYQAANNELFQA
LEKESGKHGFALQRTVSGLVIVPQKEGRNYTQEEYEALTQRKRDKLDQTGKKLTERLNEVLRQVRENEKATKELLSQADR
ELGMSCLGHRLGPLKEKYASLEKVLAYLEAVQEDILNNLEDFKPQAAQPQIPGIRMPRQEPSFERYDVNLLVDNSATKGA
PVVFEANPTYNNLFGRIEHVMQYGGVAVTDFTMIRPGALHRANGGYLVIDAREVLINPFVWDSLKRCIRTGEIRIEDVLE
QYRFMTMVTLKPEAVQLQAKIIMIGTPWIYYLLYYLDPDYRKFFKVKAEFDSSVIRSSEVMRDYALFVATHCRCENLLHF
DRSGMARLLEYTARMVEDQHRLSSQFMEISDFIREASFWAKKDGHSIVSGAAVLRAAEEKLYRFNRIEERMHELYEDGII
MVDTDGAVAGQINGLSVLDLGDHTFGRPSRITASVYTGKGGMVNIEREAKLSGPIHDKGVMILTGYLGSIFALERPLSLS
ASICFEQSYSGIEGDSASSTELYALLSALSGVALSQGIAVTGSVNQRGIIQPIGGVNFKIEGFYAVCKSQGLTGRQGVII
PKANERHLMLNDQVVAAVTAGMFSIWSVETIEQGIEILSGMKAGVRGKNGRFPKGTLYHLVDERLRRMAETLVKKDEKGK
SRAAKGPRRHTPA
>Mature_813_residues
MDLDRYRIPVEQLRWTCDTSLLDFTSTEELPDLDYAIGQKRALRSIEFGLEMEETGFNLYIAGETGTGRASTIRTILGKR
AQHEPQPNDWVYVNNFKDSLSAVSLSLPAGQGGQLASDMKELVDAFRKEIPKALESPEYEFRRSEILEQYQAANNELFQA
LEKESGKHGFALQRTVSGLVIVPQKEGRNYTQEEYEALTQRKRDKLDQTGKKLTERLNEVLRQVRENEKATKELLSQADR
ELGMSCLGHRLGPLKEKYASLEKVLAYLEAVQEDILNNLEDFKPQAAQPQIPGIRMPRQEPSFERYDVNLLVDNSATKGA
PVVFEANPTYNNLFGRIEHVMQYGGVAVTDFTMIRPGALHRANGGYLVIDAREVLINPFVWDSLKRCIRTGEIRIEDVLE
QYRFMTMVTLKPEAVQLQAKIIMIGTPWIYYLLYYLDPDYRKFFKVKAEFDSSVIRSSEVMRDYALFVATHCRCENLLHF
DRSGMARLLEYTARMVEDQHRLSSQFMEISDFIREASFWAKKDGHSIVSGAAVLRAAEEKLYRFNRIEERMHELYEDGII
MVDTDGAVAGQINGLSVLDLGDHTFGRPSRITASVYTGKGGMVNIEREAKLSGPIHDKGVMILTGYLGSIFALERPLSLS
ASICFEQSYSGIEGDSASSTELYALLSALSGVALSQGIAVTGSVNQRGIIQPIGGVNFKIEGFYAVCKSQGLTGRQGVII
PKANERHLMLNDQVVAAVTAGMFSIWSVETIEQGIEILSGMKAGVRGKNGRFPKGTLYHLVDERLRRMAETLVKKDEKGK
SRAAKGPRRHTPA

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=467, Percent_Identity=34.2612419700214, Blast_Score=244, Evalue=2e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 91346; Mature: 91346

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS00063 ALDOKETO_REDUCTASE_3 ; PS01067 SECE_SEC61G

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLDRYRIPVEQLRWTCDTSLLDFTSTEELPDLDYAIGQKRALRSIEFGLEMEETGFNLY
CCCCHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCEEEE
IAGETGTGRASTIRTILGKRAQHEPQPNDWVYVNNFKDSLSAVSLSLPAGQGGQLASDMK
EECCCCCCHHHHHHHHHCCHHCCCCCCCCEEEECCCHHCHHHEEEECCCCCCCCHHHHHH
ELVDAFRKEIPKALESPEYEFRRSEILEQYQAANNELFQALEKESGKHGFALQRTVSGLV
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCEE
IVPQKEGRNYTQEEYEALTQRKRDKLDQTGKKLTERLNEVLRQVRENEKATKELLSQADR
EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
ELGMSCLGHRLGPLKEKYASLEKVLAYLEAVQEDILNNLEDFKPQAAQPQIPGIRMPRQE
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PSFERYDVNLLVDNSATKGAPVVFEANPTYNNLFGRIEHVMQYGGVAVTDFTMIRPGALH
CCCCEEEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCE
RANGGYLVIDAREVLINPFVWDSLKRCIRTGEIRIEDVLEQYRFMTMVTLKPEAVQLQAK
ECCCCEEEEECHHHHHCHHHHHHHHHHHHCCCEEHHHHHHHHHHHEEEEECCHHEEEEEE
IIMIGTPWIYYLLYYLDPDYRKFFKVKAEFDSSVIRSSEVMRDYALFVATHCRCENLLHF
EEEEECCHHHHHHHHCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DRSGMARLLEYTARMVEDQHRLSSQFMEISDFIREASFWAKKDGHSIVSGAAVLRAAEEK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LYRFNRIEERMHELYEDGIIMVDTDGAVAGQINGLSVLDLGDHTFGRPSRITASVYTGKG
HHHHHHHHHHHHHHHHCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCEEEEEEECCC
GMVNIEREAKLSGPIHDKGVMILTGYLGSIFALERPLSLSASICFEQSYSGIEGDSASST
CEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCHH
ELYALLSALSGVALSQGIAVTGSVNQRGIIQPIGGVNFKIEGFYAVCKSQGLTGRQGVII
HHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEEEHHHEEHHCCCCCCCCCEEE
PKANERHLMLNDQVVAAVTAGMFSIWSVETIEQGIEILSGMKAGVRGKNGRFPKGTLYHL
ECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
VDERLRRMAETLVKKDEKGKSRAAKGPRRHTPA
HHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCC
>Mature Secondary Structure
MDLDRYRIPVEQLRWTCDTSLLDFTSTEELPDLDYAIGQKRALRSIEFGLEMEETGFNLY
CCCCHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCEEEE
IAGETGTGRASTIRTILGKRAQHEPQPNDWVYVNNFKDSLSAVSLSLPAGQGGQLASDMK
EECCCCCCHHHHHHHHHCCHHCCCCCCCCEEEECCCHHCHHHEEEECCCCCCCCHHHHHH
ELVDAFRKEIPKALESPEYEFRRSEILEQYQAANNELFQALEKESGKHGFALQRTVSGLV
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCEE
IVPQKEGRNYTQEEYEALTQRKRDKLDQTGKKLTERLNEVLRQVRENEKATKELLSQADR
EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
ELGMSCLGHRLGPLKEKYASLEKVLAYLEAVQEDILNNLEDFKPQAAQPQIPGIRMPRQE
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PSFERYDVNLLVDNSATKGAPVVFEANPTYNNLFGRIEHVMQYGGVAVTDFTMIRPGALH
CCCCEEEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCE
RANGGYLVIDAREVLINPFVWDSLKRCIRTGEIRIEDVLEQYRFMTMVTLKPEAVQLQAK
ECCCCEEEEECHHHHHCHHHHHHHHHHHHCCCEEHHHHHHHHHHHEEEEECCHHEEEEEE
IIMIGTPWIYYLLYYLDPDYRKFFKVKAEFDSSVIRSSEVMRDYALFVATHCRCENLLHF
EEEEECCHHHHHHHHCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DRSGMARLLEYTARMVEDQHRLSSQFMEISDFIREASFWAKKDGHSIVSGAAVLRAAEEK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LYRFNRIEERMHELYEDGIIMVDTDGAVAGQINGLSVLDLGDHTFGRPSRITASVYTGKG
HHHHHHHHHHHHHHHHCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCEEEEEEECCC
GMVNIEREAKLSGPIHDKGVMILTGYLGSIFALERPLSLSASICFEQSYSGIEGDSASST
CEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCHH
ELYALLSALSGVALSQGIAVTGSVNQRGIIQPIGGVNFKIEGFYAVCKSQGLTGRQGVII
HHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEEEHHHEEHHCCCCCCCCCEEE
PKANERHLMLNDQVVAAVTAGMFSIWSVETIEQGIEILSGMKAGVRGKNGRFPKGTLYHL
ECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
VDERLRRMAETLVKKDEKGKSRAAKGPRRHTPA
HHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]