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The map label for this gene is rfaC [H]

Identifier: 118581438

GI number: 118581438

Start: 3314316

End: 3315362

Strand: Direct

Name: rfaC [H]

Synonym: Ppro_3033

Alternate gene names: 118581438

Gene position: 3314316-3315362 (Clockwise)

Preceding gene: 118581437

Following gene: 118581439

Centisome position: 82.69

GC content: 66.19

Gene sequence:

>1047_bases
ATGAACCATCCCAACATCCTGATCATCCGCACCAGCGCCATGGGGGACATCGTTATGTCCTCTCCCCTGGCCGAGGGACT
GCGCCGGAAATATCCCCAGGCCCGCATCTGCTGGCTGGCAGAGCCGCAGGTCAAAGACCTGCTGGCCAACAACCCCAACC
TTGACCGCCTGATCGTCTGGCCCAAGACGGAATGGAAGAAGCTCTTCAAGGGTGGGCATATTGTGCTGTTGGCGCGGGAA
GCGTTCCGTTTCGCCCGCATGCTGCGCAACGAACACTTTACGCTGGTTCTGGACGCCCAGGGACTGCTGCGGACGCGGCT
TCTGGCCCGACTCTCCGGCGCGCCCAGGCGCACCGGGTTCCGCTCCCGGGAACCGGGCTGGTTTCTGATGACGGAGATGA
TTGACAAGGGGGGCAACCCCCGCCGTATGGGGAGCGAATACCTGCACCTGCTGGAAAGCCTGGGGTGTTCCACCGCCGAC
CTGTCGCCACGGATACACCTCTCCCCCGGGACCCGGGATGAGGCCACCGCGACGCTCGGCTCGGCCGGAGTAACCGGTGC
TTTCGCCGTGTTCGCCCCCTTCACCACCCGCCCCCAGAAGCACTGGGTAGAGCAAAACTGGATCGACCTGGCCAAGGGGG
TGCGGGAAGATCTGAGCATGGAGGTGGCCTGGCTGGGTGGCCCCGCCGACTCCGAGAAGGCGGCCCATCTCGCCCATCAG
GGTGGGGGCATCAGCTTTGCCGGCACGACGTCTCTGGCAGTCTCGGCCGCGATCATCGAGCAGGCAGCGCTGGTGGTGGG
GGTCGACACCGGCCTCGTGCACCTGGGCACCGCCTTCCGGGTTCCCACCGTGGCGCTGTTCGGGGCCACCCGCCCCTATC
TGGAGACTCCCAGCCCCTGTACGGTGGTGCTCTACCACCCCTTCCCCTGCTCGCCCTGCCGCCGCTCCCCCACCTGCGAA
GGCCGCTTCCCTTGCATGGGTGATATTACGGCGGCAGAGGTCCTGGCCACTGCCACGGGACTGCTGGAAAGCGGAAAACG
CCCGTGA

Upstream 100 bases:

>100_bases
CCGGTGATGCAGTAGCCGTACACCCCATCACACAGGGGATGAGTCCGCAGGCTGCACCGCTTCAGTCCGGTTCCGTCCCA
CTCCACCCTGAAGAGACCAC

Downstream 100 bases:

>100_bases
GGATCATGCATATCGAAACCGGGCGCTACCTGTACGGAGGCGCCCTGCAGGTCCTGTTCCTGCTGGAGGGTCTGCGACGG
CGCGGCATCGACAACGTACT

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MNHPNILIIRTSAMGDIVMSSPLAEGLRRKYPQARICWLAEPQVKDLLANNPNLDRLIVWPKTEWKKLFKGGHIVLLARE
AFRFARMLRNEHFTLVLDAQGLLRTRLLARLSGAPRRTGFRSREPGWFLMTEMIDKGGNPRRMGSEYLHLLESLGCSTAD
LSPRIHLSPGTRDEATATLGSAGVTGAFAVFAPFTTRPQKHWVEQNWIDLAKGVREDLSMEVAWLGGPADSEKAAHLAHQ
GGGISFAGTTSLAVSAAIIEQAALVVGVDTGLVHLGTAFRVPTVALFGATRPYLETPSPCTVVLYHPFPCSPCRRSPTCE
GRFPCMGDITAAEVLATATGLLESGKRP

Sequences:

>Translated_348_residues
MNHPNILIIRTSAMGDIVMSSPLAEGLRRKYPQARICWLAEPQVKDLLANNPNLDRLIVWPKTEWKKLFKGGHIVLLARE
AFRFARMLRNEHFTLVLDAQGLLRTRLLARLSGAPRRTGFRSREPGWFLMTEMIDKGGNPRRMGSEYLHLLESLGCSTAD
LSPRIHLSPGTRDEATATLGSAGVTGAFAVFAPFTTRPQKHWVEQNWIDLAKGVREDLSMEVAWLGGPADSEKAAHLAHQ
GGGISFAGTTSLAVSAAIIEQAALVVGVDTGLVHLGTAFRVPTVALFGATRPYLETPSPCTVVLYHPFPCSPCRRSPTCE
GRFPCMGDITAAEVLATATGLLESGKRP
>Mature_348_residues
MNHPNILIIRTSAMGDIVMSSPLAEGLRRKYPQARICWLAEPQVKDLLANNPNLDRLIVWPKTEWKKLFKGGHIVLLARE
AFRFARMLRNEHFTLVLDAQGLLRTRLLARLSGAPRRTGFRSREPGWFLMTEMIDKGGNPRRMGSEYLHLLESLGCSTAD
LSPRIHLSPGTRDEATATLGSAGVTGAFAVFAPFTTRPQKHWVEQNWIDLAKGVREDLSMEVAWLGGPADSEKAAHLAHQ
GGGISFAGTTSLAVSAAIIEQAALVVGVDTGLVHLGTAFRVPTVALFGATRPYLETPSPCTVVLYHPFPCSPCRRSPTCE
GRFPCMGDITAAEVLATATGLLESGKRP

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=294, Percent_Identity=27.891156462585, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790050, Length=355, Percent_Identity=26.7605633802817, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 37941; Mature: 37941

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHPNILIIRTSAMGDIVMSSPLAEGLRRKYPQARICWLAEPQVKDLLANNPNLDRLIVW
CCCCCEEEEEECCCCCHHHHCHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCEEEEC
PKTEWKKLFKGGHIVLLAREAFRFARMLRNEHFTLVLDAQGLLRTRLLARLSGAPRRTGF
CCHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCC
RSREPGWFLMTEMIDKGGNPRRMGSEYLHLLESLGCSTADLSPRIHLSPGTRDEATATLG
CCCCCCEEEHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHC
SAGVTGAFAVFAPFTTRPQKHWVEQNWIDLAKGVREDLSMEVAWLGGPADSEKAAHLAHQ
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHC
GGGISFAGTTSLAVSAAIIEQAALVVGVDTGLVHLGTAFRVPTVALFGATRPYLETPSPC
CCCEEEECCHHHHHHHHHHHHCEEEEEECCCCEECCCHHCCCEEEEECCCCCCCCCCCCC
TVVLYHPFPCSPCRRSPTCEGRFPCMGDITAAEVLATATGLLESGKRP
EEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNHPNILIIRTSAMGDIVMSSPLAEGLRRKYPQARICWLAEPQVKDLLANNPNLDRLIVW
CCCCCEEEEEECCCCCHHHHCHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCEEEEC
PKTEWKKLFKGGHIVLLAREAFRFARMLRNEHFTLVLDAQGLLRTRLLARLSGAPRRTGF
CCHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCC
RSREPGWFLMTEMIDKGGNPRRMGSEYLHLLESLGCSTADLSPRIHLSPGTRDEATATLG
CCCCCCEEEHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHC
SAGVTGAFAVFAPFTTRPQKHWVEQNWIDLAKGVREDLSMEVAWLGGPADSEKAAHLAHQ
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHC
GGGISFAGTTSLAVSAAIIEQAALVVGVDTGLVHLGTAFRVPTVALFGATRPYLETPSPC
CCCEEEECCHHHHHHHHHHHHCEEEEEECCCCEECCCHHCCCEEEEECCCCCCCCCCCCC
TVVLYHPFPCSPCRRSPTCEGRFPCMGDITAAEVLATATGLLESGKRP
EEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferases; Glycosyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]