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The map label for this gene is ydfH [H]

Identifier: 118581375

GI number: 118581375

Start: 3239817

End: 3240506

Strand: Reverse

Name: ydfH [H]

Synonym: Ppro_2970

Alternate gene names: 118581375

Gene position: 3240506-3239817 (Counterclockwise)

Preceding gene: 118581379

Following gene: 118581374

Centisome position: 80.85

GC content: 59.28

Gene sequence:

>690_bases
ATGCCAAAACCGATTGAAAAGCATCCCACGCTGCGCGAAAAGATCCTGGAAAACATTCGTGACGCCATCATCTCCGGATC
GCTCAAGGAAGGCTGCAAGGTGTCGGAGCCGGAGCTGGCCGAGCGTTTCGGCATCAGCCGTACGCCGATCCGCGAGGCGT
TCCGGCAGCTGGAATCCGAGGGGTACCTGACGGTGATTCCTCGGCGGGGGGCGGTTGTCAGCGAGTTCAACCTGAAAGAG
GTTGAGGATTTCTACGCCATCAAGAGCATTCTGGAGGGGTATGCCGCCCAGCGGGCCTGCCAGAGGCTGACCGACAAGGA
GCTGGAGCGCCTCCACTCCATCAATGCCCGGCTTGGCGAACTGGCCGCTGCCAACGACGTGAAGGGCTTTTTCAAGCTCC
ATGACGAATTCCACGCCGTCTTCATCAATGCCTCCGACAATGAGAAGCTCAAAGAGATGATCTATAGCCTGATCACCCGT
TTCCAGCGTCTTCGCCACATGTCCTTAAGTCTTCCCGGAAGGATGGCCGTGTCGGTGCAGGAGCACGACAAGATCCTGGA
CGCATTCCGGTGCAGGGATGCCGAGGCTGCCTCCAGGTTGGTCCAGAAGAATGCCGAGTACGGCGGCAGGGTGCTGATCG
ATGGCGGTGTCACCGCTACCCTGGCAGCAGAGTTCAAGATGGGCCGCTGA

Upstream 100 bases:

>100_bases
AGGATTGTACTCAAAAAAACTTTTCAAATACAAAATGTTAGAGTTGACAAATTTTGCATACAGTATACAATAACCAAAAT
TTTTGCCCGGAGATTTGGAT

Downstream 100 bases:

>100_bases
ACCGCCGGCATGGCGGCCATGGCTGCTGACCGGCCGGGATATTTCAGCGCTCGCCGCACCACTGAACATGGGCGGTCGCG
GCGCTCGCGAGGAAAGACGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MPKPIEKHPTLREKILENIRDAIISGSLKEGCKVSEPELAERFGISRTPIREAFRQLESEGYLTVIPRRGAVVSEFNLKE
VEDFYAIKSILEGYAAQRACQRLTDKELERLHSINARLGELAAANDVKGFFKLHDEFHAVFINASDNEKLKEMIYSLITR
FQRLRHMSLSLPGRMAVSVQEHDKILDAFRCRDAEAASRLVQKNAEYGGRVLIDGGVTATLAAEFKMGR

Sequences:

>Translated_229_residues
MPKPIEKHPTLREKILENIRDAIISGSLKEGCKVSEPELAERFGISRTPIREAFRQLESEGYLTVIPRRGAVVSEFNLKE
VEDFYAIKSILEGYAAQRACQRLTDKELERLHSINARLGELAAANDVKGFFKLHDEFHAVFINASDNEKLKEMIYSLITR
FQRLRHMSLSLPGRMAVSVQEHDKILDAFRCRDAEAASRLVQKNAEYGGRVLIDGGVTATLAAEFKMGR
>Mature_228_residues
PKPIEKHPTLREKILENIRDAIISGSLKEGCKVSEPELAERFGISRTPIREAFRQLESEGYLTVIPRRGAVVSEFNLKEV
EDFYAIKSILEGYAAQRACQRLTDKELERLHSINARLGELAAANDVKGFFKLHDEFHAVFINASDNEKLKEMIYSLITRF
QRLRHMSLSLPGRMAVSVQEHDKILDAFRCRDAEAASRLVQKNAEYGGRVLIDGGVTATLAAEFKMGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=195, Percent_Identity=27.6923076923077, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI87081914, Length=204, Percent_Identity=25, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25904; Mature: 25773

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKPIEKHPTLREKILENIRDAIISGSLKEGCKVSEPELAERFGISRTPIREAFRQLESE
CCCCCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCC
GYLTVIPRRGAVVSEFNLKEVEDFYAIKSILEGYAAQRACQRLTDKELERLHSINARLGE
CCEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAAANDVKGFFKLHDEFHAVFINASDNEKLKEMIYSLITRFQRLRHMSLSLPGRMAVSVQ
HHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHH
EHDKILDAFRCRDAEAASRLVQKNAEYGGRVLIDGGVTATLAAEFKMGR
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCC
>Mature Secondary Structure 
PKPIEKHPTLREKILENIRDAIISGSLKEGCKVSEPELAERFGISRTPIREAFRQLESE
CCCCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCC
GYLTVIPRRGAVVSEFNLKEVEDFYAIKSILEGYAAQRACQRLTDKELERLHSINARLGE
CCEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAAANDVKGFFKLHDEFHAVFINASDNEKLKEMIYSLITRFQRLRHMSLSLPGRMAVSVQ
HHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHH
EHDKILDAFRCRDAEAASRLVQKNAEYGGRVLIDGGVTATLAAEFKMGR
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]