Click here to switch to the map view.

The map label for this gene is ydfG [C]

Identifier: 118581277

GI number: 118581277

Start: 3143225

End: 3143893

Strand: Reverse

Name: ydfG [C]

Synonym: Ppro_2872

Alternate gene names: 118581277

Gene position: 3143893-3143225 (Counterclockwise)

Preceding gene: 118581278

Following gene: 118581276

Centisome position: 78.44

GC content: 45.14

Gene sequence:

>669_bases
TTGGCGAAAATTCTGTCGGGGAGAGGCTACATTCTCGGGTTGACTGCCAGGCGTATCGCATTATTGGCAGAGGTTCAAAA
TGAATTGCCGGAGAGATCGTATATTAAAAGGCTTGATATTGCAGAGCCGGTTGAGGCGATGCAATTGCTGACAGGGCTTA
TAGAAGAGATGCAAGGTACTGACATAGTAGTCGTCTGTTCGGCAGTGTGCTTTTACAATCCTGAGATCAACTGGCAAAGC
GAATACGATACCGTCACAACCAATGTTGCTGGTGTTACTGCTATGCTGAATGTTGCATTCAACTACTTCAGACAGCATGG
CGGTGGCCATATAGTGGGAATATCTTCCTTCAAGGCATTGAGAGGCGGCAGCAAATCGCCTGCCTATAACGCATCAAAGG
CTTTTTTGTCAAATTACCTGGAAGGACTCAGGTTTAATGCCCAAAAAAACCAGCTAAACATATCCGTTACCGACATAAGA
CCAGGACTGGTTAACACATCAATGTCGTTGAATAAAAACAGTCTGTTTGTAGTTTCGGTGGAAACTGCCGCTATGCAGAT
GTGTAAAGCGATCGAGAGCAAGAAACGGGTTGCCTATATACCGATGCGATATTGGCTTATAGCCTTCCTGATGCAAAAAA
TGCCATTCGGCCTGTATCGAAGATTGTAG

Upstream 100 bases:

>100_bases
ACTCCCATGGCAGGCGACAACGCGATCTCCCGTGAAAGTGCAGGCATAACTCATGAAAAAGGCGATAATAATTGGCGCGT
CTTCCGGTATCGGCAAGGAA

Downstream 100 bases:

>100_bases
GCAAACTCGCCACGGACACCGCAGATGTTCCGAGGAGACAGTATATGTGCGGTATAGCAGGGATTTTCCATTTCGAGGGG
GAAACCTCGCCAACACTGGA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MAKILSGRGYILGLTARRIALLAEVQNELPERSYIKRLDIAEPVEAMQLLTGLIEEMQGTDIVVVCSAVCFYNPEINWQS
EYDTVTTNVAGVTAMLNVAFNYFRQHGGGHIVGISSFKALRGGSKSPAYNASKAFLSNYLEGLRFNAQKNQLNISVTDIR
PGLVNTSMSLNKNSLFVVSVETAAMQMCKAIESKKRVAYIPMRYWLIAFLMQKMPFGLYRRL

Sequences:

>Translated_222_residues
MAKILSGRGYILGLTARRIALLAEVQNELPERSYIKRLDIAEPVEAMQLLTGLIEEMQGTDIVVVCSAVCFYNPEINWQS
EYDTVTTNVAGVTAMLNVAFNYFRQHGGGHIVGISSFKALRGGSKSPAYNASKAFLSNYLEGLRFNAQKNQLNISVTDIR
PGLVNTSMSLNKNSLFVVSVETAAMQMCKAIESKKRVAYIPMRYWLIAFLMQKMPFGLYRRL
>Mature_221_residues
AKILSGRGYILGLTARRIALLAEVQNELPERSYIKRLDIAEPVEAMQLLTGLIEEMQGTDIVVVCSAVCFYNPEINWQSE
YDTVTTNVAGVTAMLNVAFNYFRQHGGGHIVGISSFKALRGGSKSPAYNASKAFLSNYLEGLRFNAQKNQLNISVTDIRP
GLVNTSMSLNKNSLFVVSVETAAMQMCKAIESKKRVAYIPMRYWLIAFLMQKMPFGLYRRL

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

None

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 24790; Mature: 24659

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKILSGRGYILGLTARRIALLAEVQNELPERSYIKRLDIAEPVEAMQLLTGLIEEMQGT
CCCEECCCCEEEEHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
DIVVVCSAVCFYNPEINWQSEYDTVTTNVAGVTAMLNVAFNYFRQHGGGHIVGISSFKAL
CEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHH
RGGSKSPAYNASKAFLSNYLEGLRFNAQKNQLNISVTDIRPGLVNTSMSLNKNSLFVVSV
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEE
ETAAMQMCKAIESKKRVAYIPMRYWLIAFLMQKMPFGLYRRL
HHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCHHHHHCC
>Mature Secondary Structure 
AKILSGRGYILGLTARRIALLAEVQNELPERSYIKRLDIAEPVEAMQLLTGLIEEMQGT
CCEECCCCEEEEHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
DIVVVCSAVCFYNPEINWQSEYDTVTTNVAGVTAMLNVAFNYFRQHGGGHIVGISSFKAL
CEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHH
RGGSKSPAYNASKAFLSNYLEGLRFNAQKNQLNISVTDIRPGLVNTSMSLNKNSLFVVSV
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEE
ETAAMQMCKAIESKKRVAYIPMRYWLIAFLMQKMPFGLYRRL
HHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]