| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is polA [H]
Identifier: 118581241
GI number: 118581241
Start: 3100114
End: 3102795
Strand: Direct
Name: polA [H]
Synonym: Ppro_2835
Alternate gene names: 118581241
Gene position: 3100114-3102795 (Clockwise)
Preceding gene: 118581240
Following gene: 118581242
Centisome position: 77.35
GC content: 63.05
Gene sequence:
>2682_bases ATGAGTCACGACGATACGCTCTACCTGGTCGACGGCTCGTCCTATATCTACCGGGCCTACTACGCCATCCGCCACCTCTC CTCCCCCACGGGGCACCCCACCAACACCATCTATGGATTCACCCAGATGCTGCTGAAGCTCCTCAAGGAGCACCAGCCGA GACATGTGGCAGTGGTTTTCGATGTGGGGAGAGAAACATTCCGCACCGAACTGTACCCCGACTACAAGGCCAACCGCGCC GCATTGCCCGATGACCTGCGGGTTCAGATGGGGCCGATCCGCGACCTGGTGCGCGCCTTCAACATCCCGGCCCTGGAACT GGCCGGCTTCGAGGCCGACGACATCATCGGCTGCCTGGCCGCCCGCTTCAGCGCCACCGGCGGCAGGGTGGTGATAGTCA CCGGCGACAAGGATCTGATGCAGATCGTCACCGAAAGGGTGACCCTGCTGGACACCATGAAGGAGAAGCGCTCCGCCATC ACCGACGTTATCGAGCGCTTCGGCGTGGAACCGCGCCTGGTAACGGACATCCTTGGCCTGGCCGGCGACGCGTCGGACAA CATTCCCGGCGTGCCGGGCATCGGCGAGAAGACCGCCATGAAACTGATCAGAGAGTATGGTTCCCTGGACCAACTGCTTG AACGCGCCTCCGAGGTCAAAGGAAAGAACGGCGAGAAGCTACGCGAGTTCCGCGACCAGGCCCTGCTGTCGCGCCGACTG GCCACCATCAGATGCGACGTACCGATCCAGGTGGAACTGGAGGAGTTAGCCAGCCAGGAGCCGGACCGGGAGGCGCTGAA CACCCTCTTCCGCCTGTACGGGTTCACCACCCTGATCAAGGAACTGACCGGTCGTTCCACCCTCTCCAGCGAAGGTTACT GCACGGTCACAGCCCAGGAGGAGTTGGAGGAACTCGTCCATGCCCTGGAGAGGTCCGAAGAGTTCGCCATCGACCTGGAG ACCACCAGCCTGGATCCCCGGGACGCGGAGATCGTCGGCCTCTCCTTCTCCTTCAGGGACCACCAGGCCTGGTATATCCC GGTGGGGCACACAAGCGATGCCGGCCTCCAGCCGGGCCAACTCCCCCGCGACCTGGTGCTGGAGCGACTGCGCCCGCAGC TGGAGAGCCCATCTCCCACCAAGATCGGCCAGAACATAAAGTTCGACATGCAGGTGCTGGCCACCAACGGCGTCTCACTG AGCGGCATCCGCTTCGACACCATGCTGGCCTCCTATGTGCTCAACCCCTCCCGCCAGGGGCACGGACTTGACGCCCTGGC CCTGGAGCACCTGGGCCACCGCATGATCAGCTACGCGGAAGTAACCGGCAGCGGCAAGACGCAGAAAAACTTCTCCCAGG TGGAGATCGAAACAGCCTCGCGCTACGCCTGCGAGGATGCCGACGCAACCTGGCTCCTGCATCGAAAGTTCTCCCCGCTG CTGGCCGAGAACGGGGTTGAGGAGTTGTTCCATCGCATCGAGATGCCGCTGGTACCCATCCTGGCCGGGATGGAGAACCA TGGCGTGCTGCTGGACATTCGACTGCTGGCGGATCTTTCACGCGATTTTTCCAGCCGCATGGCAACACTGGAGGGGCGCA TATTCCAGCTGGCGGGCACAACCTTCAACCTTAACTCCCCCAAGCAGCTGGGCGAAGTACTCTTCGAGCGCCTGCAGCTG AAGACCGGCAAGAAGACCAAGGGCAAGACCGGCTGGTCCACGGACAACGAGGTGCTCAGTTCCCTGGCCGAGGAGCACGA GATCGCCCGCCTGATCCTGGACTACCGCGGCCTGTCCAAACTGAAATCAACCTACAGCGACGCCCTGCCGCGCCTGGTGC ATCCCCGCACCGGACGGGTACACACCTCCTACAACCAGACCGTCACCAGCACCGGCCGCCTCTCCTCATCAGACCCCAAC CTGCAGAACATCCCCATCCGCAGCGACGAGGGGCGCATGATCCGGCACGCCTTCATCGCCCCGCCCGGGCATGTGATCAT CTCTGCTGACTACTCCCAGATCGAGCTGCGCGTACTGGCCCACCTGTCCGGCGATCCGGTCTTCTGTCAGGCCTTCGAGC ACGACGAGGACATCCACACCCGCACCGCCAGCGAGGTTTTCGGCCTGTTCCCCGAGATGGTCACAGCCGAGATGCGCCGC CAGGCCAAGACCATCAACTTCGGCATCATCTACGGCCAGGGTTCCTTCAGCCTGGCCAGGCAGCTGGGCATCGCCCGCAA AACCGCCGAAGAGTTCATCAGCGCCTACAAGGAGCGCCATGCAAAGGCGGTTGGCTTCCTGGACGACTGCATCCGCCAGG CGGAGGAGCAGGGGTTCGTCACCACCATCCTGGGGCGGCGACTGCCCATTGCGGACATCACCAGCACGAACGGCAACATC CGCGCCTTTGCCCAGCGCAACGCCATCAACTACCCGATCCAAGGTTCGGCGGCCGACATCATCAAGAGCGCCATGATCCG GGTGGACGGCCGCATCCGCAGCGAGGGGCTCAAGAGCCGCCTGATCATGCAGGTTCACGACGAACTGGTCTTCGAGGTTC GGGAAGATGAGCTGCTGGCCATGGAGCTCTTGGTGGAGGAGGAAATGTCACGGGCGGTGGAATTGCGCATCCCGCTCAAG GTTGACATCAGCCACGGCGTTAACTGGAGCGAGGCGCACTGA
Upstream 100 bases:
>100_bases ACTACGACGGTATGCAGTTCGCCATGCGCGACGCCAGCCGTCGCCCGGCAATGGCCTTCCTCCTCTTCACCCGCGACGAA CCGGGCGAGAGTGACCCGTC
Downstream 100 bases:
>100_bases CTCGTGCCCTGGCTGTATGCCCCGCCCTCCTACCTTCTTCCCGTCACCACATCCCACAAACAGCCGCCGGGGAATGGCCG TACGGCCGTTTCCCGGCGGC
Product: DNA polymerase I
Products: NA
Alternate protein names: POL I [H]
Number of amino acids: Translated: 893; Mature: 892
Protein sequence:
>893_residues MSHDDTLYLVDGSSYIYRAYYAIRHLSSPTGHPTNTIYGFTQMLLKLLKEHQPRHVAVVFDVGRETFRTELYPDYKANRA ALPDDLRVQMGPIRDLVRAFNIPALELAGFEADDIIGCLAARFSATGGRVVIVTGDKDLMQIVTERVTLLDTMKEKRSAI TDVIERFGVEPRLVTDILGLAGDASDNIPGVPGIGEKTAMKLIREYGSLDQLLERASEVKGKNGEKLREFRDQALLSRRL ATIRCDVPIQVELEELASQEPDREALNTLFRLYGFTTLIKELTGRSTLSSEGYCTVTAQEELEELVHALERSEEFAIDLE TTSLDPRDAEIVGLSFSFRDHQAWYIPVGHTSDAGLQPGQLPRDLVLERLRPQLESPSPTKIGQNIKFDMQVLATNGVSL SGIRFDTMLASYVLNPSRQGHGLDALALEHLGHRMISYAEVTGSGKTQKNFSQVEIETASRYACEDADATWLLHRKFSPL LAENGVEELFHRIEMPLVPILAGMENHGVLLDIRLLADLSRDFSSRMATLEGRIFQLAGTTFNLNSPKQLGEVLFERLQL KTGKKTKGKTGWSTDNEVLSSLAEEHEIARLILDYRGLSKLKSTYSDALPRLVHPRTGRVHTSYNQTVTSTGRLSSSDPN LQNIPIRSDEGRMIRHAFIAPPGHVIISADYSQIELRVLAHLSGDPVFCQAFEHDEDIHTRTASEVFGLFPEMVTAEMRR QAKTINFGIIYGQGSFSLARQLGIARKTAEEFISAYKERHAKAVGFLDDCIRQAEEQGFVTTILGRRLPIADITSTNGNI RAFAQRNAINYPIQGSAADIIKSAMIRVDGRIRSEGLKSRLIMQVHDELVFEVREDELLAMELLVEEEMSRAVELRIPLK VDISHGVNWSEAH
Sequences:
>Translated_893_residues MSHDDTLYLVDGSSYIYRAYYAIRHLSSPTGHPTNTIYGFTQMLLKLLKEHQPRHVAVVFDVGRETFRTELYPDYKANRA ALPDDLRVQMGPIRDLVRAFNIPALELAGFEADDIIGCLAARFSATGGRVVIVTGDKDLMQIVTERVTLLDTMKEKRSAI TDVIERFGVEPRLVTDILGLAGDASDNIPGVPGIGEKTAMKLIREYGSLDQLLERASEVKGKNGEKLREFRDQALLSRRL ATIRCDVPIQVELEELASQEPDREALNTLFRLYGFTTLIKELTGRSTLSSEGYCTVTAQEELEELVHALERSEEFAIDLE TTSLDPRDAEIVGLSFSFRDHQAWYIPVGHTSDAGLQPGQLPRDLVLERLRPQLESPSPTKIGQNIKFDMQVLATNGVSL SGIRFDTMLASYVLNPSRQGHGLDALALEHLGHRMISYAEVTGSGKTQKNFSQVEIETASRYACEDADATWLLHRKFSPL LAENGVEELFHRIEMPLVPILAGMENHGVLLDIRLLADLSRDFSSRMATLEGRIFQLAGTTFNLNSPKQLGEVLFERLQL KTGKKTKGKTGWSTDNEVLSSLAEEHEIARLILDYRGLSKLKSTYSDALPRLVHPRTGRVHTSYNQTVTSTGRLSSSDPN LQNIPIRSDEGRMIRHAFIAPPGHVIISADYSQIELRVLAHLSGDPVFCQAFEHDEDIHTRTASEVFGLFPEMVTAEMRR QAKTINFGIIYGQGSFSLARQLGIARKTAEEFISAYKERHAKAVGFLDDCIRQAEEQGFVTTILGRRLPIADITSTNGNI RAFAQRNAINYPIQGSAADIIKSAMIRVDGRIRSEGLKSRLIMQVHDELVFEVREDELLAMELLVEEEMSRAVELRIPLK VDISHGVNWSEAH >Mature_892_residues SHDDTLYLVDGSSYIYRAYYAIRHLSSPTGHPTNTIYGFTQMLLKLLKEHQPRHVAVVFDVGRETFRTELYPDYKANRAA LPDDLRVQMGPIRDLVRAFNIPALELAGFEADDIIGCLAARFSATGGRVVIVTGDKDLMQIVTERVTLLDTMKEKRSAIT DVIERFGVEPRLVTDILGLAGDASDNIPGVPGIGEKTAMKLIREYGSLDQLLERASEVKGKNGEKLREFRDQALLSRRLA TIRCDVPIQVELEELASQEPDREALNTLFRLYGFTTLIKELTGRSTLSSEGYCTVTAQEELEELVHALERSEEFAIDLET TSLDPRDAEIVGLSFSFRDHQAWYIPVGHTSDAGLQPGQLPRDLVLERLRPQLESPSPTKIGQNIKFDMQVLATNGVSLS GIRFDTMLASYVLNPSRQGHGLDALALEHLGHRMISYAEVTGSGKTQKNFSQVEIETASRYACEDADATWLLHRKFSPLL AENGVEELFHRIEMPLVPILAGMENHGVLLDIRLLADLSRDFSSRMATLEGRIFQLAGTTFNLNSPKQLGEVLFERLQLK TGKKTKGKTGWSTDNEVLSSLAEEHEIARLILDYRGLSKLKSTYSDALPRLVHPRTGRVHTSYNQTVTSTGRLSSSDPNL QNIPIRSDEGRMIRHAFIAPPGHVIISADYSQIELRVLAHLSGDPVFCQAFEHDEDIHTRTASEVFGLFPEMVTAEMRRQ AKTINFGIIYGQGSFSLARQLGIARKTAEEFISAYKERHAKAVGFLDDCIRQAEEQGFVTTILGRRLPIADITSTNGNIR AFAQRNAINYPIQGSAADIIKSAMIRVDGRIRSEGLKSRLIMQVHDELVFEVREDELLAMELLVEEEMSRAVELRIPLKV DISHGVNWSEAH
Specific function: In addition to polymerase activity, this DNA polymerase exhibits 3' to 5' and 5' to 3' exonuclease activity. It is able to utilize nicked circular duplex DNA as a template and can unwind the parental DNA strand from its template [H]
COG id: COG0749
COG function: function code L; DNA polymerase I - 3'-5' exonuclease and polymerase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 5'-3' exonuclease domain [H]
Homologues:
Organism=Homo sapiens, GI112420958, Length=518, Percent_Identity=32.2393822393822, Blast_Score=259, Evalue=7e-69, Organism=Homo sapiens, GI139394648, Length=690, Percent_Identity=27.1014492753623, Blast_Score=216, Evalue=9e-56, Organism=Escherichia coli, GI1790294, Length=925, Percent_Identity=46.1621621621622, Blast_Score=798, Evalue=0.0, Organism=Escherichia coli, GI226510970, Length=243, Percent_Identity=30.8641975308642, Blast_Score=125, Evalue=1e-29, Organism=Caenorhabditis elegans, GI86563272, Length=407, Percent_Identity=30.7125307125307, Blast_Score=177, Evalue=3e-44, Organism=Drosophila melanogaster, GI17933644, Length=594, Percent_Identity=28.4511784511784, Blast_Score=189, Evalue=6e-48,
Paralogues:
None
Copy number: 400 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002562 - InterPro: IPR020046 - InterPro: IPR020045 - InterPro: IPR002421 - InterPro: IPR020047 - InterPro: IPR019760 - InterPro: IPR001098 - InterPro: IPR018320 - InterPro: IPR002298 - InterPro: IPR008918 - InterPro: IPR003583 - InterPro: IPR012337 [H]
Pfam domain/function: PF01612 3_5_exonuc; PF01367 5_3_exonuc; PF02739 5_3_exonuc_N; PF00476 DNA_pol_A [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 99805; Mature: 99674
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: PS00447 DNA_POLYMERASE_A
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHDDTLYLVDGSSYIYRAYYAIRHLSSPTGHPTNTIYGFTQMLLKLLKEHQPRHVAVVF CCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE DVGRETFRTELYPDYKANRAALPDDLRVQMGPIRDLVRAFNIPALELAGFEADDIIGCLA ECCCHHHHHHCCCCCCCCCCCCCCCHHEEHHHHHHHHHHHCCCCEEECCCCHHHHHHHHH ARFSATGGRVVIVTGDKDLMQIVTERVTLLDTMKEKRSAITDVIERFGVEPRLVTDILGL HHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH AGDASDNIPGVPGIGEKTAMKLIREYGSLDQLLERASEVKGKNGEKLREFRDQALLSRRL CCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH ATIRCDVPIQVELEELASQEPDREALNTLFRLYGFTTLIKELTGRSTLSSEGYCTVTAQE HEEECCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHH ELEELVHALERSEEFAIDLETTSLDPRDAEIVGLSFSFRDHQAWYIPVGHTSDAGLQPGQ HHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCC LPRDLVLERLRPQLESPSPTKIGQNIKFDMQVLATNGVSLSGIRFDTMLASYVLNPSRQG CCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCEECCCHHHHHHHHHHCCCCCCC HGLDALALEHLGHRMISYAEVTGSGKTQKNFSQVEIETASRYACEDADATWLLHRKFSPL CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHCCCCCCCEEEEHHCCCHH LAENGVEELFHRIEMPLVPILAGMENHGVLLDIRLLADLSRDFSSRMATLEGRIFQLAGT HHHCCHHHHHHHHCCCHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCEEEEEECC TFNLNSPKQLGEVLFERLQLKTGKKTKGKTGWSTDNEVLSSLAEEHEIARLILDYRGLSK EECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LKSTYSDALPRLVHPRTGRVHTSYNQTVTSTGRLSSSDPNLQNIPIRSDEGRMIRHAFIA HHHHHHHHHHHHCCCCCCCEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC PPGHVIISADYSQIELRVLAHLSGDPVFCQAFEHDEDIHTRTASEVFGLFPEMVTAEMRR CCCCEEEECCCCCEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH QAKTINFGIIYGQGSFSLARQLGIARKTAEEFISAYKERHAKAVGFLDDCIRQAEEQGFV HHCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH TTILGRRLPIADITSTNGNIRAFAQRNAINYPIQGSAADIIKSAMIRVDGRIRSEGLKSR HHHHCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH LIMQVHDELVFEVREDELLAMELLVEEEMSRAVELRIPLKVDISHGVNWSEAH HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCC >Mature Secondary Structure SHDDTLYLVDGSSYIYRAYYAIRHLSSPTGHPTNTIYGFTQMLLKLLKEHQPRHVAVVF CCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE DVGRETFRTELYPDYKANRAALPDDLRVQMGPIRDLVRAFNIPALELAGFEADDIIGCLA ECCCHHHHHHCCCCCCCCCCCCCCCHHEEHHHHHHHHHHHCCCCEEECCCCHHHHHHHHH ARFSATGGRVVIVTGDKDLMQIVTERVTLLDTMKEKRSAITDVIERFGVEPRLVTDILGL HHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH AGDASDNIPGVPGIGEKTAMKLIREYGSLDQLLERASEVKGKNGEKLREFRDQALLSRRL CCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH ATIRCDVPIQVELEELASQEPDREALNTLFRLYGFTTLIKELTGRSTLSSEGYCTVTAQE HEEECCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHH ELEELVHALERSEEFAIDLETTSLDPRDAEIVGLSFSFRDHQAWYIPVGHTSDAGLQPGQ HHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCC LPRDLVLERLRPQLESPSPTKIGQNIKFDMQVLATNGVSLSGIRFDTMLASYVLNPSRQG CCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCEECCCHHHHHHHHHHCCCCCCC HGLDALALEHLGHRMISYAEVTGSGKTQKNFSQVEIETASRYACEDADATWLLHRKFSPL CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHCCCCCCCEEEEHHCCCHH LAENGVEELFHRIEMPLVPILAGMENHGVLLDIRLLADLSRDFSSRMATLEGRIFQLAGT HHHCCHHHHHHHHCCCHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCEEEEEECC TFNLNSPKQLGEVLFERLQLKTGKKTKGKTGWSTDNEVLSSLAEEHEIARLILDYRGLSK EECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LKSTYSDALPRLVHPRTGRVHTSYNQTVTSTGRLSSSDPNLQNIPIRSDEGRMIRHAFIA HHHHHHHHHHHHCCCCCCCEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC PPGHVIISADYSQIELRVLAHLSGDPVFCQAFEHDEDIHTRTASEVFGLFPEMVTAEMRR CCCCEEEECCCCCEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH QAKTINFGIIYGQGSFSLARQLGIARKTAEEFISAYKERHAKAVGFLDDCIRQAEEQGFV HHCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH TTILGRRLPIADITSTNGNIRAFAQRNAINYPIQGSAADIIKSAMIRVDGRIRSEGLKSR HHHHCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH LIMQVHDELVFEVREDELLAMELLVEEEMSRAVELRIPLKVDISHGVNWSEAH HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 6276402; 8346018; 9278503; 6183253; 6302278; 7035456; 3883192; 1989886; 8469987; 8260491; 9514742; 9888810; 10588690; 8442659 [H]