| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is hypF2 [H]
Identifier: 118581187
GI number: 118581187
Start: 3040967
End: 3043309
Strand: Reverse
Name: hypF2 [H]
Synonym: Ppro_2780
Alternate gene names: 118581187
Gene position: 3043309-3040967 (Counterclockwise)
Preceding gene: 118581188
Following gene: 118581186
Centisome position: 75.93
GC content: 62.44
Gene sequence:
>2343_bases ATGTTTGTGTCCAACGGTCCGGTTGAGAGGATCAGGGTCGAGGTCGAAGGGATTGTGCAGGGCGTTGGGTTTCGCCCGTT TATCTACCGATTGGCCGCACGCTACGGTATCAGCGGATGGGTACGGAATACCCCGGCTGGAGTGCTCCTGGAAGGGGAGG GGGAACGGTCGCACCTGTCCGCCTTTCTGCGTGACATAAGCGCGCAGGCACCGCCTCTGGCCGCCATAAGTTCCGTCCAC AGCGAGACGATCTCCGTTACAGGGGAGGGGGGGTTTTCAATACTCCCCAGCAGCGGTGGGGAGAACAGTGCCCAGATATC ACCTGACTGCGACGTCTGCGAAGACTGCTTAAGGGAACTCTTCGACCCCCGCGACCGCCGCTACCTCTATCCGTTCATCA ACTGCACCAACTGCGGTCCCCGCTACTCCATCATCACCGCCATACCCTACGACCGCCGTTTCACCACCATGGAACGGTTC GCCATGTGCGCCGACTGCCGTGCCGAGTACGAAGACCCCGCCAACCGCCGTTTCCATGCCCAACCCAATGCCTGTCCGGT CTGCGGCCCGCGCATCGCGCTGCTCGACAGTTCTGGCCGTGAGGTGATGCAGGGTGGAGGTGGTCGTGGTCACGACGTTC TGCTTGCCGCTGTCAACCTTCTGCAGCGTGGTGGGGTCCTGGCTGTCAAGGGAATCGGCGGTTATCATCTGGCGGTGGAC GCATGCAATGAAGAAGCTGTGGCGAACCTGCGTCGGCGAAAGCAGCGTGATGAAAAGCCATTCGCCATAATGGCCCCTGA CCTGGCTCGAATCGACTCCTTTGCCCGTTGCAGCGAAACGGAGCAGCGCCTCCTGGGCGGTCCGGAGCGACCCATCGTGC TCCTGCCCAAGCGGGAAGCCACTCCCATTGCGTCGTTGGTTGCGCCCGACAACGGTTATTTTGGTGTGATGCTCCCCTCC ACGCCGTTGCACCATCTCCTGCTCAGGAACAACTTCATCGCCCTCGTCATGACCAGCGGCAATCAGTCGGATGAACCCAT AGCCTATCGGGATAGCGAGGCACGTGAACAGCTTGCCGGCATCGCCGACCTGTTCCTCGCTCACGACAGGGAGATCCACG TACGCAGCGACGACTCGATCATCAGGGTGTTTCACGGCAGCCCACTTTTCCTGCGCCGCTCCCGGGGCTATGTGCCGCGG GGGATCAGGCTGCCGGCGGAGCAGCCATCCGTTCTGGCGGTGGGTGGAGAACTCAAGGCAACGGTCTGCCTCACCCGCAA CGACCGGGCGTTCCTGAGCCAGCACATCGGCGACCTGAAGAACAGCGCCACGCTTCGCTCCCTGGAGGAGTGCGTCGCCC ATCTGGAGAAGATTCTGGAGATACGCCCGGCCCTGGTGGCCCATGATCTGCACCCCGACTACCTCTCCACCGCCTATGCC GTTGATCTGCCGGATCTGCCCCGGGTCGCCGTTCAGCACCACCATGCCCACATGGCCTCCTGTATGGCGGAAAACAGCCT GGAGGGAGAAGCCATCGGCGTCATCTTTGACGGCACCGGCTACGGGTTGGACGGTACTGTCTGGGGAGGGGAGTTTCTCG TGGGCGGCTACCGGGAGTTCCGGCGCCAGGGCCACATGCGCCTGGTTGCCCTGCCGGGGGGAGACGCGGCGGTGCGCGAG CCGTATCGCATGGCGCTTTCCTATCTCTTCGATGCCGGAGAGAGGGACTTCGCTGCCCTGCAACTTTCCTGCCTGGGGGA TGTTTCCGCCCAGGAGCGGCACCTGCTGCAGAGAATGCTGGAGCGCGGCATCAACGCGCCGCTCACCTCCAGCTGCGGCC GGCTCTTTGATGCCGTCTCCGCCCTGCTGGACGTGAGAAGTAGGATAACCTACGAAGGACAGGCGGCCATCGAACTGGAA GCGCTGGCTGAATCAGCAGTGACCGACCGGGAGTACCCCTTTTCCGTCGAGGAGTTTGCTGGCAGGCTGATTCTCGATAT GCGCCCCGCACTGGTTGAGCTACTGAAGGATCTGGCCCTTGGAGTACCCCGTGCCATCATGGCCCGCTGCTTTCATAACA GCATGGCCGCGGCAACGGCAGGCATGTGTGAACGGATTCGCTGCAGGAACGGCCTCAATCGCGTGGTCCTGTCGGGGGGT GTTTTTCAGAACAAACTGCTGGTAGAGGGGACACTCAACAGGCTTGCGGAGCTTGATTTTCAGGTGTTTACCCATCGCCT GGTTCCACCCGGTGACGGGGGGCTGGCCCTGGGGCAGGCGGTCATTGCGGGGTGCATGCGGAGGGAAGCGGAACGCTCGA CTGAGCTGGAAATGCTCCGCTGA
Upstream 100 bases:
>100_bases CCCAGACCGGGGAGGGGATGGATCGATGGTACGCATGGCTCTCCCAGGGGATGGCAGACGCTCGATCGAAAAAGGCCTGA GCAGCGAACGAAAGCGAGTG
Downstream 100 bases:
>100_bases GTTGCGTGACCGGGAGGGACCAGGTCGGTCTCTTTCCTATTTTTGACGACAGGATATGGTGAACAGTTATGTGTCTGGCA ATACCGATGCGGGTGTTAAG
Product: (NiFe) hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF2; [NiFe]-hydrogenase maturation factor hypF2; Hydrogenase maturation protein hypF2 [H]
Number of amino acids: Translated: 780; Mature: 780
Protein sequence:
>780_residues MFVSNGPVERIRVEVEGIVQGVGFRPFIYRLAARYGISGWVRNTPAGVLLEGEGERSHLSAFLRDISAQAPPLAAISSVH SETISVTGEGGFSILPSSGGENSAQISPDCDVCEDCLRELFDPRDRRYLYPFINCTNCGPRYSIITAIPYDRRFTTMERF AMCADCRAEYEDPANRRFHAQPNACPVCGPRIALLDSSGREVMQGGGGRGHDVLLAAVNLLQRGGVLAVKGIGGYHLAVD ACNEEAVANLRRRKQRDEKPFAIMAPDLARIDSFARCSETEQRLLGGPERPIVLLPKREATPIASLVAPDNGYFGVMLPS TPLHHLLLRNNFIALVMTSGNQSDEPIAYRDSEAREQLAGIADLFLAHDREIHVRSDDSIIRVFHGSPLFLRRSRGYVPR GIRLPAEQPSVLAVGGELKATVCLTRNDRAFLSQHIGDLKNSATLRSLEECVAHLEKILEIRPALVAHDLHPDYLSTAYA VDLPDLPRVAVQHHHAHMASCMAENSLEGEAIGVIFDGTGYGLDGTVWGGEFLVGGYREFRRQGHMRLVALPGGDAAVRE PYRMALSYLFDAGERDFAALQLSCLGDVSAQERHLLQRMLERGINAPLTSSCGRLFDAVSALLDVRSRITYEGQAAIELE ALAESAVTDREYPFSVEEFAGRLILDMRPALVELLKDLALGVPRAIMARCFHNSMAAATAGMCERIRCRNGLNRVVLSGG VFQNKLLVEGTLNRLAELDFQVFTHRLVPPGDGGLALGQAVIAGCMRREAERSTELEMLR
Sequences:
>Translated_780_residues MFVSNGPVERIRVEVEGIVQGVGFRPFIYRLAARYGISGWVRNTPAGVLLEGEGERSHLSAFLRDISAQAPPLAAISSVH SETISVTGEGGFSILPSSGGENSAQISPDCDVCEDCLRELFDPRDRRYLYPFINCTNCGPRYSIITAIPYDRRFTTMERF AMCADCRAEYEDPANRRFHAQPNACPVCGPRIALLDSSGREVMQGGGGRGHDVLLAAVNLLQRGGVLAVKGIGGYHLAVD ACNEEAVANLRRRKQRDEKPFAIMAPDLARIDSFARCSETEQRLLGGPERPIVLLPKREATPIASLVAPDNGYFGVMLPS TPLHHLLLRNNFIALVMTSGNQSDEPIAYRDSEAREQLAGIADLFLAHDREIHVRSDDSIIRVFHGSPLFLRRSRGYVPR GIRLPAEQPSVLAVGGELKATVCLTRNDRAFLSQHIGDLKNSATLRSLEECVAHLEKILEIRPALVAHDLHPDYLSTAYA VDLPDLPRVAVQHHHAHMASCMAENSLEGEAIGVIFDGTGYGLDGTVWGGEFLVGGYREFRRQGHMRLVALPGGDAAVRE PYRMALSYLFDAGERDFAALQLSCLGDVSAQERHLLQRMLERGINAPLTSSCGRLFDAVSALLDVRSRITYEGQAAIELE ALAESAVTDREYPFSVEEFAGRLILDMRPALVELLKDLALGVPRAIMARCFHNSMAAATAGMCERIRCRNGLNRVVLSGG VFQNKLLVEGTLNRLAELDFQVFTHRLVPPGDGGLALGQAVIAGCMRREAERSTELEMLR >Mature_780_residues MFVSNGPVERIRVEVEGIVQGVGFRPFIYRLAARYGISGWVRNTPAGVLLEGEGERSHLSAFLRDISAQAPPLAAISSVH SETISVTGEGGFSILPSSGGENSAQISPDCDVCEDCLRELFDPRDRRYLYPFINCTNCGPRYSIITAIPYDRRFTTMERF AMCADCRAEYEDPANRRFHAQPNACPVCGPRIALLDSSGREVMQGGGGRGHDVLLAAVNLLQRGGVLAVKGIGGYHLAVD ACNEEAVANLRRRKQRDEKPFAIMAPDLARIDSFARCSETEQRLLGGPERPIVLLPKREATPIASLVAPDNGYFGVMLPS TPLHHLLLRNNFIALVMTSGNQSDEPIAYRDSEAREQLAGIADLFLAHDREIHVRSDDSIIRVFHGSPLFLRRSRGYVPR GIRLPAEQPSVLAVGGELKATVCLTRNDRAFLSQHIGDLKNSATLRSLEECVAHLEKILEIRPALVAHDLHPDYLSTAYA VDLPDLPRVAVQHHHAHMASCMAENSLEGEAIGVIFDGTGYGLDGTVWGGEFLVGGYREFRRQGHMRLVALPGGDAAVRE PYRMALSYLFDAGERDFAALQLSCLGDVSAQERHLLQRMLERGINAPLTSSCGRLFDAVSALLDVRSRITYEGQAAIELE ALAESAVTDREYPFSVEEFAGRLILDMRPALVELLKDLALGVPRAIMARCFHNSMAAATAGMCERIRCRNGLNRVVLSGG VFQNKLLVEGTLNRLAELDFQVFTHRLVPPGDGGLALGQAVIAGCMRREAERSTELEMLR
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=764, Percent_Identity=42.4083769633508, Blast_Score=472, Evalue=1e-134,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 85528; Mature: 85528
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS00430 TONB_DEPENDENT_REC_1 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFVSNGPVERIRVEVEGIVQGVGFRPFIYRLAARYGISGWVRNTPAGVLLEGEGERSHLS CCCCCCCHHHEEEEEHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHH AFLRDISAQAPPLAAISSVHSETISVTGEGGFSILPSSGGENSAQISPDCDVCEDCLREL HHHHHHCCCCCCHHHHHHHCCCEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH FDPRDRRYLYPFINCTNCGPRYSIITAIPYDRRFTTMERFAMCADCRAEYEDPANRRFHA CCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEC QPNACPVCGPRIALLDSSGREVMQGGGGRGHDVLLAAVNLLQRGGVLAVKGIGGYHLAVD CCCCCCCCCCEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEE ACNEEAVANLRRRKQRDEKPFAIMAPDLARIDSFARCSETEQRLLGGPERPIVLLPKREA CCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC TPIASLVAPDNGYFGVMLPSTPLHHLLLRNNFIALVMTSGNQSDEPIAYRDSEAREQLAG CCCHHEECCCCCEEEEECCCCHHHHHHHHCCEEEEEEECCCCCCCCCEECCHHHHHHHHH IADLFLAHDREIHVRSDDSIIRVFHGSPLFLRRSRGYVPRGIRLPAEQPSVLAVGGELKA HHHHHHHCCCEEEEECCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCEEE TVCLTRNDRAFLSQHIGDLKNSATLRSLEECVAHLEKILEIRPALVAHDLHPDYLSTAYA EEEEECCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCEEE VDLPDLPRVAVQHHHAHMASCMAENSLEGEAIGVIFDGTGYGLDGTVWGGEFLVGGYREF ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEECCHHEECCHHHH RRQGHMRLVALPGGDAAVREPYRMALSYLFDAGERDFAALQLSCLGDVSAQERHLLQRML HHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHCCCCHHHHHHHHHHH ERGINAPLTSSCGRLFDAVSALLDVRSRITYEGQAAIELEALAESAVTDREYPFSVEEFA HCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHCCCCCCCCCHHHHC GRLILDMRPALVELLKDLALGVPRAIMARCFHNSMAAATAGMCERIRCRNGLNRVVLSGG CEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC VFQNKLLVEGTLNRLAELDFQVFTHRLVPPGDGGLALGQAVIAGCMRREAERSTELEMLR CCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCC >Mature Secondary Structure MFVSNGPVERIRVEVEGIVQGVGFRPFIYRLAARYGISGWVRNTPAGVLLEGEGERSHLS CCCCCCCHHHEEEEEHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHH AFLRDISAQAPPLAAISSVHSETISVTGEGGFSILPSSGGENSAQISPDCDVCEDCLREL HHHHHHCCCCCCHHHHHHHCCCEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH FDPRDRRYLYPFINCTNCGPRYSIITAIPYDRRFTTMERFAMCADCRAEYEDPANRRFHA CCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEC QPNACPVCGPRIALLDSSGREVMQGGGGRGHDVLLAAVNLLQRGGVLAVKGIGGYHLAVD CCCCCCCCCCEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEE ACNEEAVANLRRRKQRDEKPFAIMAPDLARIDSFARCSETEQRLLGGPERPIVLLPKREA CCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC TPIASLVAPDNGYFGVMLPSTPLHHLLLRNNFIALVMTSGNQSDEPIAYRDSEAREQLAG CCCHHEECCCCCEEEEECCCCHHHHHHHHCCEEEEEEECCCCCCCCCEECCHHHHHHHHH IADLFLAHDREIHVRSDDSIIRVFHGSPLFLRRSRGYVPRGIRLPAEQPSVLAVGGELKA HHHHHHHCCCEEEEECCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCEEE TVCLTRNDRAFLSQHIGDLKNSATLRSLEECVAHLEKILEIRPALVAHDLHPDYLSTAYA EEEEECCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCEEE VDLPDLPRVAVQHHHAHMASCMAENSLEGEAIGVIFDGTGYGLDGTVWGGEFLVGGYREF ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEECCHHEECCHHHH RRQGHMRLVALPGGDAAVREPYRMALSYLFDAGERDFAALQLSCLGDVSAQERHLLQRML HHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHCCCCHHHHHHHHHHH ERGINAPLTSSCGRLFDAVSALLDVRSRITYEGQAAIELEALAESAVTDREYPFSVEEFA HCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHCCCCCCCCCHHHHC GRLILDMRPALVELLKDLALGVPRAIMARCFHNSMAAATAGMCERIRCRNGLNRVVLSGG CEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC VFQNKLLVEGTLNRLAELDFQVFTHRLVPPGDGGLALGQAVIAGCMRREAERSTELEMLR CCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9799289; 12948488 [H]