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The map label for this gene is yciR [C]

Identifier: 118581126

GI number: 118581126

Start: 2962285

End: 2964174

Strand: Reverse

Name: yciR [C]

Synonym: Ppro_2716

Alternate gene names: 118581126

Gene position: 2964174-2962285 (Counterclockwise)

Preceding gene: 118581127

Following gene: 118581124

Centisome position: 73.96

GC content: 58.15

Gene sequence:

>1890_bases
ATGCGGGATACGTATCAGGTGGAGTACCGGCGAAAAACAAAAACGGGCGAATGGAAATGGATTCTGGCCTACGGCAAGGT
GGTGGCGAGGGACGAGGCTGGCGCCCCGCTCAGGATGCTCGGAACGATTGCCGACATACACGAGCGCAAACAAAACGAGC
AGCAACTGGCCTATCTGGCTACCCACGATGAATTGACCGGACTGGCCAGCCGGGCGTTGTTGTATGACCGCCTGGAACAG
TCGCTGTATTACGCCCGCCGTTCCGGACGGATCCTGGCGGTGCTGTTGCTGGACCTGGACCGTTTCAAGGTCATTAACGA
CAGTCTCGGCCACGAATTCGGCGACAACCTGCTGAAAGCCGTTGCTCTTCGCCTGCAACAGGTCATACGCGAAGGGGACA
CCGCGGCCCGGTTCGGGGGGGACGAATTCGTCATTCTGCTGGCTGAGGTGGCTGACCCGGATGACGTGGGGATGCTGGCG
GGCAGGATTCTGCGCTGCCTCGAGCCACCTCATCTGATCGACGGCAAGGAGGTCACCGTATCCGCCAGTCTGGGAATCAG
CCTGTTTCCCAGGGACAGCGACGATGACGCCACCCTGATCCGCAACGCTGATATTGCCATGTATCGGGCCAAGCGGGAGG
GGGGGGGCTCATTCTCCTTTTTTTCCCCCGAGATGAACCAGCGGGCCATGGAGACTTTGGAAACGGAAAACGCTCTGCGC
CAGGCGCTGGACCGGAGTGAATTTCTGCTGCATTACCAACCCAAGGTTGAATTGGCCACAGGTCGGATGATTGGTTGCGA
AGCATTGGTCCGCTGGCTGCATCCGCAACGAGGAATGGTGCCGCCGAACGAATTCATTCCTCTGGCCGAAGAGACCGGCC
TGATTGTGCCGCTGGGAAACTGGGTACTGACGGAGGCCTGCCGGCAGGTGCGTGCCTGGCAGGACGAAAGACTGCCGATC
GTGAGTGTGGCGGTCAATCTCTCAGCCCGGCAGTTTCGCGCGGGGAAGTTGCCGTGGCTGGTCGCGAACGTCCTGCTGGC
AACCGGTCTCGACCCCTGCTGGCTGGAGCTTGAGATGACCGAAAGCCTGGTGATGGACAATCCTGAACGGGCTATTGCAC
TGATGCGGGAGCTGAAAGACATCGGTGTTCGGCTGAGCATGGACGATTTCGGCACCGGCTACTCGAGTTTAGCCAGTTTA
AGCCGTTTTCCCATCGACTACCTGAAAATCGACCGCTCCTTTGTTACCGATATCGTCACCAACCCGCACTCGGCCACTAT
CGCCGCTTCGATCATCGACATAGCGCACCGTATGCAGCTCCAGGTAATCGCGGAAGGGGTGGAGGCCGAGGCCCAGCTTG
GCTATCTGCGCAAACATGGCTGCGATCAGATTCAGGGCTATTTTTTCAGTCGTCCCCTGGCCGCCAATGACTTTGCTGCA
TTGCTGCGAAAAAATACGCCATACGTCATTCCGTCCCATGGCACTATGGCTCGTACGTTGCTGTTAGTTGATGACGAGCG
CAATATCCTCCGGGCGTTAAAGCGGCTCCTTGCTGAAGAGGACTACCGCATCGTTACCGCAGGCAATGCCTGTGAAGGGC
TGGAGTTGCTGGCCAGGGAAAGCATCCAGGTGGTGATTTCGGATCAGCGCATGCCGGATATGAGCGGAACCGAGTTTTTA
AGACTGGTCAAAGCGCTGCATCCCGATACGGTGCGCATTATCCTGTCCGGTTTTGTCGATCTTGAAACCGTCACCAAAGC
AGTGAACGAGGGGGAGGTATACAAGGTGCTCACAAAGCCGTGGGACGATGGCCAGTTGCGCAAGATCATCCGGGACTCTT
TCCGCGTGTACGAGCAGTCCGCCATTGTCCGCCGAACGGGATTGCCATAG

Upstream 100 bases:

>100_bases
GCGAACACAGCAAAAATCCCACAAAAACAAACTTTTAAAGAAAAAACGACGACATGCAAAGACCTAACCGGAAATTACTG
ATGAGGAGTACATTACCGGT

Downstream 100 bases:

>100_bases
AGACTGTATTGCAATGCGTCCCTATAATGCCATCATGGATGCAACTCAACTAAGATTTGCGGTTCTTGCCATGGCGGAGA
GGTCTTCAGATGGCTAGGGT

Product: response regulator receiver modulated diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 629; Mature: 629

Protein sequence:

>629_residues
MRDTYQVEYRRKTKTGEWKWILAYGKVVARDEAGAPLRMLGTIADIHERKQNEQQLAYLATHDELTGLASRALLYDRLEQ
SLYYARRSGRILAVLLLDLDRFKVINDSLGHEFGDNLLKAVALRLQQVIREGDTAARFGGDEFVILLAEVADPDDVGMLA
GRILRCLEPPHLIDGKEVTVSASLGISLFPRDSDDDATLIRNADIAMYRAKREGGGSFSFFSPEMNQRAMETLETENALR
QALDRSEFLLHYQPKVELATGRMIGCEALVRWLHPQRGMVPPNEFIPLAEETGLIVPLGNWVLTEACRQVRAWQDERLPI
VSVAVNLSARQFRAGKLPWLVANVLLATGLDPCWLELEMTESLVMDNPERAIALMRELKDIGVRLSMDDFGTGYSSLASL
SRFPIDYLKIDRSFVTDIVTNPHSATIAASIIDIAHRMQLQVIAEGVEAEAQLGYLRKHGCDQIQGYFFSRPLAANDFAA
LLRKNTPYVIPSHGTMARTLLLVDDERNILRALKRLLAEEDYRIVTAGNACEGLELLARESIQVVISDQRMPDMSGTEFL
RLVKALHPDTVRIILSGFVDLETVTKAVNEGEVYKVLTKPWDDGQLRKIIRDSFRVYEQSAIVRRTGLP

Sequences:

>Translated_629_residues
MRDTYQVEYRRKTKTGEWKWILAYGKVVARDEAGAPLRMLGTIADIHERKQNEQQLAYLATHDELTGLASRALLYDRLEQ
SLYYARRSGRILAVLLLDLDRFKVINDSLGHEFGDNLLKAVALRLQQVIREGDTAARFGGDEFVILLAEVADPDDVGMLA
GRILRCLEPPHLIDGKEVTVSASLGISLFPRDSDDDATLIRNADIAMYRAKREGGGSFSFFSPEMNQRAMETLETENALR
QALDRSEFLLHYQPKVELATGRMIGCEALVRWLHPQRGMVPPNEFIPLAEETGLIVPLGNWVLTEACRQVRAWQDERLPI
VSVAVNLSARQFRAGKLPWLVANVLLATGLDPCWLELEMTESLVMDNPERAIALMRELKDIGVRLSMDDFGTGYSSLASL
SRFPIDYLKIDRSFVTDIVTNPHSATIAASIIDIAHRMQLQVIAEGVEAEAQLGYLRKHGCDQIQGYFFSRPLAANDFAA
LLRKNTPYVIPSHGTMARTLLLVDDERNILRALKRLLAEEDYRIVTAGNACEGLELLARESIQVVISDQRMPDMSGTEFL
RLVKALHPDTVRIILSGFVDLETVTKAVNEGEVYKVLTKPWDDGQLRKIIRDSFRVYEQSAIVRRTGLP
>Mature_629_residues
MRDTYQVEYRRKTKTGEWKWILAYGKVVARDEAGAPLRMLGTIADIHERKQNEQQLAYLATHDELTGLASRALLYDRLEQ
SLYYARRSGRILAVLLLDLDRFKVINDSLGHEFGDNLLKAVALRLQQVIREGDTAARFGGDEFVILLAEVADPDDVGMLA
GRILRCLEPPHLIDGKEVTVSASLGISLFPRDSDDDATLIRNADIAMYRAKREGGGSFSFFSPEMNQRAMETLETENALR
QALDRSEFLLHYQPKVELATGRMIGCEALVRWLHPQRGMVPPNEFIPLAEETGLIVPLGNWVLTEACRQVRAWQDERLPI
VSVAVNLSARQFRAGKLPWLVANVLLATGLDPCWLELEMTESLVMDNPERAIALMRELKDIGVRLSMDDFGTGYSSLASL
SRFPIDYLKIDRSFVTDIVTNPHSATIAASIIDIAHRMQLQVIAEGVEAEAQLGYLRKHGCDQIQGYFFSRPLAANDFAA
LLRKNTPYVIPSHGTMARTLLLVDDERNILRALKRLLAEEDYRIVTAGNACEGLELLARESIQVVISDQRMPDMSGTEFL
RLVKALHPDTVRIILSGFVDLETVTKAVNEGEVYKVLTKPWDDGQLRKIIRDSFRVYEQSAIVRRTGLP

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=476, Percent_Identity=39.2857142857143, Blast_Score=346, Evalue=2e-96,
Organism=Escherichia coli, GI87081921, Length=443, Percent_Identity=36.117381489842, Blast_Score=278, Evalue=1e-75,
Organism=Escherichia coli, GI226510982, Length=435, Percent_Identity=31.7241379310345, Blast_Score=202, Evalue=4e-53,
Organism=Escherichia coli, GI1790496, Length=249, Percent_Identity=34.9397590361446, Blast_Score=155, Evalue=1e-38,
Organism=Escherichia coli, GI1786507, Length=256, Percent_Identity=33.59375, Blast_Score=153, Evalue=3e-38,
Organism=Escherichia coli, GI87081845, Length=259, Percent_Identity=33.2046332046332, Blast_Score=151, Evalue=9e-38,
Organism=Escherichia coli, GI87081980, Length=255, Percent_Identity=34.9019607843137, Blast_Score=150, Evalue=3e-37,
Organism=Escherichia coli, GI87081743, Length=240, Percent_Identity=33.3333333333333, Blast_Score=149, Evalue=8e-37,
Organism=Escherichia coli, GI1788502, Length=248, Percent_Identity=35.0806451612903, Blast_Score=148, Evalue=8e-37,
Organism=Escherichia coli, GI1787055, Length=241, Percent_Identity=33.195020746888, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788849, Length=236, Percent_Identity=33.0508474576271, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI1788381, Length=430, Percent_Identity=26.5116279069767, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI87082096, Length=245, Percent_Identity=31.8367346938775, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI145693134, Length=154, Percent_Identity=37.6623376623377, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=35.7954545454545, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1786584, Length=165, Percent_Identity=30.9090909090909, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1787802, Length=166, Percent_Identity=33.1325301204819, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI87081977, Length=153, Percent_Identity=35.9477124183007, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87081974, Length=122, Percent_Identity=37.7049180327869, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87082007, Length=165, Percent_Identity=32.7272727272727, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=33.9393939393939, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788956, Length=160, Percent_Identity=33.75, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=31.4814814814815, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1789650, Length=429, Percent_Identity=21.4452214452214, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788905, Length=131, Percent_Identity=37.4045801526718, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1788085, Length=179, Percent_Identity=29.608938547486, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787410, Length=129, Percent_Identity=29.4573643410853, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1790299, Length=127, Percent_Identity=31.496062992126, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 70745; Mature: 70745

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDTYQVEYRRKTKTGEWKWILAYGKVVARDEAGAPLRMLGTIADIHERKQNEQQLAYLA
CCCCEEEEEEECCCCCCEEEEEEECCEEECCCCCCCHHHHHHHHHHHHHCCCHHHEEEEE
THDELTGLASRALLYDRLEQSLYYARRSGRILAVLLLDLDRFKVINDSLGHEFGDNLLKA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCHHHHHHHHHH
VALRLQQVIREGDTAARFGGDEFVILLAEVADPDDVGMLAGRILRCLEPPHLIDGKEVTV
HHHHHHHHHHCCCCHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEE
SASLGISLFPRDSDDDATLIRNADIAMYRAKREGGGSFSFFSPEMNQRAMETLETENALR
EEECCEEECCCCCCCCCEEEECCCEEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHH
QALDRSEFLLHYQPKVELATGRMIGCEALVRWLHPQRGMVPPNEFIPLAEETGLIVPLGN
HHHCCCCEEEEECCCEEECCCCCHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCEEEECCH
WVLTEACRQVRAWQDERLPIVSVAVNLSARQFRAGKLPWLVANVLLATGLDPCWLELEMT
HHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEEH
ESLVMDNPERAIALMRELKDIGVRLSMDDFGTGYSSLASLSRFPIDYLKIDRSFVTDIVT
HHHHCCCHHHHHHHHHHHHHCCCEEEEHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHC
NPHSATIAASIIDIAHRMQLQVIAEGVEAEAQLGYLRKHGCDQIQGYFFSRPLAANDFAA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCHHHCCCCCCHHHHH
LLRKNTPYVIPSHGTMARTLLLVDDERNILRALKRLLAEEDYRIVTAGNACEGLELLARE
HHHCCCCEEEECCCCEEEEEEEEECCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHC
SIQVVISDQRMPDMSGTEFLRLVKALHPDTVRIILSGFVDLETVTKAVNEGEVYKVLTKP
CEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
WDDGQLRKIIRDSFRVYEQSAIVRRTGLP
CCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRDTYQVEYRRKTKTGEWKWILAYGKVVARDEAGAPLRMLGTIADIHERKQNEQQLAYLA
CCCCEEEEEEECCCCCCEEEEEEECCEEECCCCCCCHHHHHHHHHHHHHCCCHHHEEEEE
THDELTGLASRALLYDRLEQSLYYARRSGRILAVLLLDLDRFKVINDSLGHEFGDNLLKA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCHHHHHHHHHH
VALRLQQVIREGDTAARFGGDEFVILLAEVADPDDVGMLAGRILRCLEPPHLIDGKEVTV
HHHHHHHHHHCCCCHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEE
SASLGISLFPRDSDDDATLIRNADIAMYRAKREGGGSFSFFSPEMNQRAMETLETENALR
EEECCEEECCCCCCCCCEEEECCCEEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHH
QALDRSEFLLHYQPKVELATGRMIGCEALVRWLHPQRGMVPPNEFIPLAEETGLIVPLGN
HHHCCCCEEEEECCCEEECCCCCHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCEEEECCH
WVLTEACRQVRAWQDERLPIVSVAVNLSARQFRAGKLPWLVANVLLATGLDPCWLELEMT
HHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEEH
ESLVMDNPERAIALMRELKDIGVRLSMDDFGTGYSSLASLSRFPIDYLKIDRSFVTDIVT
HHHHCCCHHHHHHHHHHHHHCCCEEEEHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHC
NPHSATIAASIIDIAHRMQLQVIAEGVEAEAQLGYLRKHGCDQIQGYFFSRPLAANDFAA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCHHHCCCCCCHHHHH
LLRKNTPYVIPSHGTMARTLLLVDDERNILRALKRLLAEEDYRIVTAGNACEGLELLARE
HHHCCCCEEEECCCCEEEEEEEEECCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHC
SIQVVISDQRMPDMSGTEFLRLVKALHPDTVRIILSGFVDLETVTKAVNEGEVYKVLTKP
CEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
WDDGQLRKIIRDSFRVYEQSAIVRRTGLP
CCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]