Click here to switch to the map view.

The map label for this gene is hofB [C]

Identifier: 118581110

GI number: 118581110

Start: 2940511

End: 2941824

Strand: Reverse

Name: hofB [C]

Synonym: Ppro_2700

Alternate gene names: 118581110

Gene position: 2941824-2940511 (Counterclockwise)

Preceding gene: 118581111

Following gene: 118581109

Centisome position: 73.4

GC content: 55.48

Gene sequence:

>1314_bases
ATGCCATTCCAAAACTATCCATCCGACCCCGGAAGAATCAATGTGTCTGGTTCCGTTCCGTTTTTCCAGGAGCTGAAAAC
CAAAATTCACCGAACTCTGATTGAACGTGTCGATATCAGTAAGCTGGAACAGCTCAGGGGCAATGACCTGACGCGGGAAA
TCGGTTACATCGTCGAAAGCCTGATCGCCGAGGAAGGTGTTCCCCTGAACCAGCAGGAAAAGGAACGTCTGATTATTGAG
ATCCAGCACGAGACCTTCGGCCTTGGACCGTTGGAGCCGTTGCTGGCCGACCCGGATATTTCGGACATCCTGGTAAACAG
CTGCTCGAATATCTATGTGGAGCGTTTCGGCAAGCTTCACAAAACCGATATTGTATTCAGGGATAACGCGCATCTGCTGC
AGATCATCGAGAGGATCGTCTCCAAGGTTGGCAGGAGGATCGACGAGTCGTCTCCCTATGTGGATGCCCGTCTGCCCGAT
GGCTCCCGCGTCAACGCCATCATTCCTCCGCTGGCCATTGACGGGCCGGCCCTCTCCATTCGTCGCTTTGGTGTCGAACC
TCTCAGAATTGGTGATCTGTTGCGCCTGGGGGCACTGGACGACAAGATGTTCAAGATCCTTGAAGGTGCGGTGAAGACCC
GTCTCAATATCCTGATATCGGGCGGTACCGGTACAGGTAAGACAACGCTTCTGAACGTGCTCTCCGAAAACATCCCTTCC
ACGGAACGGATCATCTCCATCGAGGACTCCGCCGAACTCCACCTGAAACAGGAGCATGTGGTCAGGCTGGAAACCAGGCC
GCCCAATATCGAGGGGAGGGGCGAGGTTACCCAGCGTGACCTTGTCAGGAACTCGCTCAGGATGAGGCCGGACAGGATCA
TCATCGGCGAGGTGCGCGGCGGTGAGGCGCTGGACATGCTCCAGGCCATGAACACCGGACACGACGGTTCGCTCTCCACG
ATCCACTCCAACTCCACCCGGGACGCGATGGCGCGACTGGAAACCATGGTGCTGATGGCTGGCATGGATCTGCCACAGAA
GGCTATCCGCGAACAGATCGCGTCGGCAATAAACATCGTCGTGCAACTGGTCCGCTTTGCCGACGGAACGAGAAAGATCG
TCAAGCTGACCGAGATCAACGGGCTGGAAGGGGATACCATTGTCATGCAGGATATTTTCGTTTTCGATCAGAAGGGGGTC
GACAGTGACGGGAATATCGTGGGTACGTACCGACCGACCGGAGTCCGGCCACGTTTCGCTGAACGCTTCAAGGTCTATGG
TTTCGATCTTCCGGCTGGAATTTTTGAAAGGTAG

Upstream 100 bases:

>100_bases
CTGTACCCCAGGTCGGCGGTCAGTAAGGCCATAGTTCAGCTGGCCGAACTGCTGAAGTAGCGTATGCATCCTGTAACTCA
TAACGGCTGGAGTTGACCTT

Downstream 100 bases:

>100_bases
GTGGTGACCAGTGTTACTTGCTGTCTTTCTGGCTTTTTTTGCGGTGTTTGTCGCGGTGATGGCTATCTATTTCTGGCTTA
CCGCCGTGAAAGAGTCTCCC

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MPFQNYPSDPGRINVSGSVPFFQELKTKIHRTLIERVDISKLEQLRGNDLTREIGYIVESLIAEEGVPLNQQEKERLIIE
IQHETFGLGPLEPLLADPDISDILVNSCSNIYVERFGKLHKTDIVFRDNAHLLQIIERIVSKVGRRIDESSPYVDARLPD
GSRVNAIIPPLAIDGPALSIRRFGVEPLRIGDLLRLGALDDKMFKILEGAVKTRLNILISGGTGTGKTTLLNVLSENIPS
TERIISIEDSAELHLKQEHVVRLETRPPNIEGRGEVTQRDLVRNSLRMRPDRIIIGEVRGGEALDMLQAMNTGHDGSLST
IHSNSTRDAMARLETMVLMAGMDLPQKAIREQIASAINIVVQLVRFADGTRKIVKLTEINGLEGDTIVMQDIFVFDQKGV
DSDGNIVGTYRPTGVRPRFAERFKVYGFDLPAGIFER

Sequences:

>Translated_437_residues
MPFQNYPSDPGRINVSGSVPFFQELKTKIHRTLIERVDISKLEQLRGNDLTREIGYIVESLIAEEGVPLNQQEKERLIIE
IQHETFGLGPLEPLLADPDISDILVNSCSNIYVERFGKLHKTDIVFRDNAHLLQIIERIVSKVGRRIDESSPYVDARLPD
GSRVNAIIPPLAIDGPALSIRRFGVEPLRIGDLLRLGALDDKMFKILEGAVKTRLNILISGGTGTGKTTLLNVLSENIPS
TERIISIEDSAELHLKQEHVVRLETRPPNIEGRGEVTQRDLVRNSLRMRPDRIIIGEVRGGEALDMLQAMNTGHDGSLST
IHSNSTRDAMARLETMVLMAGMDLPQKAIREQIASAINIVVQLVRFADGTRKIVKLTEINGLEGDTIVMQDIFVFDQKGV
DSDGNIVGTYRPTGVRPRFAERFKVYGFDLPAGIFER
>Mature_436_residues
PFQNYPSDPGRINVSGSVPFFQELKTKIHRTLIERVDISKLEQLRGNDLTREIGYIVESLIAEEGVPLNQQEKERLIIEI
QHETFGLGPLEPLLADPDISDILVNSCSNIYVERFGKLHKTDIVFRDNAHLLQIIERIVSKVGRRIDESSPYVDARLPDG
SRVNAIIPPLAIDGPALSIRRFGVEPLRIGDLLRLGALDDKMFKILEGAVKTRLNILISGGTGTGKTTLLNVLSENIPST
ERIISIEDSAELHLKQEHVVRLETRPPNIEGRGEVTQRDLVRNSLRMRPDRIIIGEVRGGEALDMLQAMNTGHDGSLSTI
HSNSTRDAMARLETMVLMAGMDLPQKAIREQIASAINIVVQLVRFADGTRKIVKLTEINGLEGDTIVMQDIFVFDQKGVD
SDGNIVGTYRPTGVRPRFAERFKVYGFDLPAGIFER

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1786296, Length=195, Percent_Identity=31.7948717948718, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 48748; Mature: 48617

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFQNYPSDPGRINVSGSVPFFQELKTKIHRTLIERVDISKLEQLRGNDLTREIGYIVES
CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHH
LIAEEGVPLNQQEKERLIIEIQHETFGLGPLEPLLADPDISDILVNSCSNIYVERFGKLH
HHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCC
KTDIVFRDNAHLLQIIERIVSKVGRRIDESSPYVDARLPDGSRVNAIIPPLAIDGPALSI
CCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEECCCEECCCCCHHH
RRFGVEPLRIGDLLRLGALDDKMFKILEGAVKTRLNILISGGTGTGKTTLLNVLSENIPS
HHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHCCCC
TERIISIEDSAELHLKQEHVVRLETRPPNIEGRGEVTQRDLVRNSLRMRPDRIIIGEVRG
CCEEEEECCCCCEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
GEALDMLQAMNTGHDGSLSTIHSNSTRDAMARLETMVLMAGMDLPQKAIREQIASAINIV
CHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
VQLVRFADGTRKIVKLTEINGLEGDTIVMQDIFVFDQKGVDSDGNIVGTYRPTGVRPRFA
HHHHHHCCCCCEEEEEEECCCCCCCEEEEEHEEEEECCCCCCCCCEEEECCCCCCCHHHH
ERFKVYGFDLPAGIFER
HHHEEECCCCCHHHHCC
>Mature Secondary Structure 
PFQNYPSDPGRINVSGSVPFFQELKTKIHRTLIERVDISKLEQLRGNDLTREIGYIVES
CCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHH
LIAEEGVPLNQQEKERLIIEIQHETFGLGPLEPLLADPDISDILVNSCSNIYVERFGKLH
HHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCC
KTDIVFRDNAHLLQIIERIVSKVGRRIDESSPYVDARLPDGSRVNAIIPPLAIDGPALSI
CCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEECCCEECCCCCHHH
RRFGVEPLRIGDLLRLGALDDKMFKILEGAVKTRLNILISGGTGTGKTTLLNVLSENIPS
HHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHCCCC
TERIISIEDSAELHLKQEHVVRLETRPPNIEGRGEVTQRDLVRNSLRMRPDRIIIGEVRG
CCEEEEECCCCCEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
GEALDMLQAMNTGHDGSLSTIHSNSTRDAMARLETMVLMAGMDLPQKAIREQIASAINIV
CHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
VQLVRFADGTRKIVKLTEINGLEGDTIVMQDIFVFDQKGVDSDGNIVGTYRPTGVRPRFA
HHHHHHCCCCCEEEEEEECCCCCCCEEEEEHEEEEECCCCCCCCCEEEECCCCCCCHHHH
ERFKVYGFDLPAGIFER
HHHEEECCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]