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The map label for this gene is yciR [C]

Identifier: 118580899

GI number: 118580899

Start: 2692868

End: 2694187

Strand: Reverse

Name: yciR [C]

Synonym: Ppro_2486

Alternate gene names: 118580899

Gene position: 2694187-2692868 (Counterclockwise)

Preceding gene: 118580901

Following gene: 118580898

Centisome position: 67.22

GC content: 60.23

Gene sequence:

>1320_bases
ATGCCACTGCTACCCATACCCCGTTTGACCCTGCTGGCCAAGCTGGTGCTCAGTTTTTTCATCAGCGTGAGCTGCATGAT
GGCTGCCCTGTACTATTCCGTCAACGGTCTGGGGGCCATGCACAGGATGGAAACGGAAATCGCCCGCAACGACCTGACCG
CCGCCACCCTGACCGTTTCCCTGCGCGAGATGATGCTGGCCCAGCAGCGCTATGCCGGCCGCTACCAGATCCTTCCCCAG
GGTGAATTCAAGACCCTTTACGACCAGAACGCTGAAAAGTTCCGGGGGGCGCTGACTTCGCTGAAACAGGTCTATCCCGG
AAACAACATCTCCCTGCTGGAAAAACAGTACGCCAGGTATTCGCGGTTGACCGGCCGGCTTTTTGCCGGCGGCGCGGTGG
ATGCGCGCGCCATGAAACGGGTGGTTGCGCAGATAGATGACAGCATCGGGCGCATCCGCCAGGACCAGCTCCACTCCCTG
GAGGAGAAGCTGCGCAGTTCCGACGAAAAAGTGGCTGCCACCGTCTCCTGGTCCCTGGGGTTCGCCATTGGCGGCGCCTC
CCTCTCGCTGCTGATCGCCGGCCTGATGATCTACTCCTTTGCCAGTTCAATCAGAAAACTGAAAACAGCTACCCACCGCA
TCGCTGCCGGTGAGTTTGACTACGACCCGCGGATTCCGGCGGGGGACGAGATCGGCGATCTGTCCAGGGACTTCATGGCC
ATGGCCAGGCGGCTCAAGGATCTTGAACAGGTCTGTCTGGATGCCAGCCCCCTGACCCGGCTGCCGGGCAACATCGCCAT
CGAACGCTCCATAAACCGCCGTCTGCGCGAAGGGGCTGCCTTTGCCATGTGTTACCTGGATCTGGATAACTTTAAGTCCT
ATAACGACCGCTACGGCTATATCAAGGCCAGCGACCTGATCAGGGATGCGGGCAGGGTGATCCATGACGCGGTCAGGCGC
CTGGGTGATCCCGATGCCTTTGTCGGGCACATCGGCGGCGACGATTTCGTGGTGATCATCGGCTCCAGGTTGGTGAAAGC
CGCCTGCACGTCGATCATTCACGATATCGACGCCATGATTCCTGCCTACTACTCCGACGAGGATCGGGCCGCCGGCTTCA
TCCAGGGGGTTGATCGCTATGGTGTGCCGCGCAATTTTCCGCTCATATCCATATCCATTGCCGCGATGGACTGCCAGCCG
GGCAGGTTTTCCTCTGCCGCGGAGATCGCCACGGCCGCGGCCGCGGTCAAGGATCGCGTCAAGGAAGCAAAGGGGAGCAA
TTACATTATCGTTCGGGAGGCGGGTGCCTGTGAGGTCTGA

Upstream 100 bases:

>100_bases
GTCTCCGCGCTCTAGTGCGCCCAATCGAGTTGCATCCGGCTTCCGTCTGTACTACCATGCCGACGAACCGATTTTCATGT
ATCCAACGGGAGTACTCCCC

Downstream 100 bases:

>100_bases
TTCTGTCGTGACAGTATGGCTGGTGGTGGTTCTTTTCCTGCTGGGGGGGTGCGCGGCCGTGAAACAGCCACTTCCTTCCG
CGCCGGTTGTCAGCTTGCAG

Product: diguanylate cyclase

Products: NA

Alternate protein names: Response Regulator Receiver Modulated Diguanylate Cyclase; Diguanylate Cyclase; EAL/GGDEF Domain-Containing Protein; GGDEF Domain-Containing Protein; Cyclic Diguanylate Phosphodiesterase Domain Protein; GGDEF Domain Protein; Signal Transduction Protein; Signaling Protein; Sensory Box/GGDEF Family Protein; EAL Domain-Containing Protein; GGDEF/EAL Sensory Box Protein; Histidine Kinase; Two-Component System Response Regulator Receiver; Response Regulator; EAL Domain Protein; Sensor Protein; Response Regulator Receiver; Sensory Box Histidine Kinase/Response Regulator; Diguanylate Cyclase/Phosphodiesterase Family Protein; Ggdef Domain Protein; EAL Domain Proteni; Signal Protein; HAMP Domain-Containing Protein; EAL Domain/GGDEF Domain-Containing Protein; EAL Domain/GGDEF Domain Protein; CheY-Like Response Regulator Modulated Diguanylate Cyclase; Diguanylate Phosphodiesterase; GGDEFCBS:EAL Domain-Containing Protein; GGDEF Domain/HAMP Domain-Containing Protein; EAL Domain-Containing; GGDEF Family Protein; Diguanylate Cyclase/Phosphodiesterase With Cbs Domains; Methyl-Accepting Chemotaxis Sensory Transducer; Response Regulator Receiver Protein; Eal/Ggdef Domain Protein

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MPLLPIPRLTLLAKLVLSFFISVSCMMAALYYSVNGLGAMHRMETEIARNDLTAATLTVSLREMMLAQQRYAGRYQILPQ
GEFKTLYDQNAEKFRGALTSLKQVYPGNNISLLEKQYARYSRLTGRLFAGGAVDARAMKRVVAQIDDSIGRIRQDQLHSL
EEKLRSSDEKVAATVSWSLGFAIGGASLSLLIAGLMIYSFASSIRKLKTATHRIAAGEFDYDPRIPAGDEIGDLSRDFMA
MARRLKDLEQVCLDASPLTRLPGNIAIERSINRRLREGAAFAMCYLDLDNFKSYNDRYGYIKASDLIRDAGRVIHDAVRR
LGDPDAFVGHIGGDDFVVIIGSRLVKAACTSIIHDIDAMIPAYYSDEDRAAGFIQGVDRYGVPRNFPLISISIAAMDCQP
GRFSSAAEIATAAAAVKDRVKEAKGSNYIIVREAGACEV

Sequences:

>Translated_439_residues
MPLLPIPRLTLLAKLVLSFFISVSCMMAALYYSVNGLGAMHRMETEIARNDLTAATLTVSLREMMLAQQRYAGRYQILPQ
GEFKTLYDQNAEKFRGALTSLKQVYPGNNISLLEKQYARYSRLTGRLFAGGAVDARAMKRVVAQIDDSIGRIRQDQLHSL
EEKLRSSDEKVAATVSWSLGFAIGGASLSLLIAGLMIYSFASSIRKLKTATHRIAAGEFDYDPRIPAGDEIGDLSRDFMA
MARRLKDLEQVCLDASPLTRLPGNIAIERSINRRLREGAAFAMCYLDLDNFKSYNDRYGYIKASDLIRDAGRVIHDAVRR
LGDPDAFVGHIGGDDFVVIIGSRLVKAACTSIIHDIDAMIPAYYSDEDRAAGFIQGVDRYGVPRNFPLISISIAAMDCQP
GRFSSAAEIATAAAAVKDRVKEAKGSNYIIVREAGACEV
>Mature_438_residues
PLLPIPRLTLLAKLVLSFFISVSCMMAALYYSVNGLGAMHRMETEIARNDLTAATLTVSLREMMLAQQRYAGRYQILPQG
EFKTLYDQNAEKFRGALTSLKQVYPGNNISLLEKQYARYSRLTGRLFAGGAVDARAMKRVVAQIDDSIGRIRQDQLHSLE
EKLRSSDEKVAATVSWSLGFAIGGASLSLLIAGLMIYSFASSIRKLKTATHRIAAGEFDYDPRIPAGDEIGDLSRDFMAM
ARRLKDLEQVCLDASPLTRLPGNIAIERSINRRLREGAAFAMCYLDLDNFKSYNDRYGYIKASDLIRDAGRVIHDAVRRL
GDPDAFVGHIGGDDFVVIIGSRLVKAACTSIIHDIDAMIPAYYSDEDRAAGFIQGVDRYGVPRNFPLISISIAAMDCQPG
RFSSAAEIATAAAAVKDRVKEAKGSNYIIVREAGACEV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48305; Mature: 48174

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLLPIPRLTLLAKLVLSFFISVSCMMAALYYSVNGLGAMHRMETEIARNDLTAATLTVS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHH
LREMMLAQQRYAGRYQILPQGEFKTLYDQNAEKFRGALTSLKQVYPGNNISLLEKQYARY
HHHHHHHHHHHCCCEEECCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
SRLTGRLFAGGAVDARAMKRVVAQIDDSIGRIRQDQLHSLEEKLRSSDEKVAATVSWSLG
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHH
FAIGGASLSLLIAGLMIYSFASSIRKLKTATHRIAAGEFDYDPRIPAGDEIGDLSRDFMA
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
MARRLKDLEQVCLDASPLTRLPGNIAIERSINRRLREGAAFAMCYLDLDNFKSYNDRYGY
HHHHHHHHHHHHCCCCCHHHCCCCEEEHHHHHHHHHHCCEEEEEEEEHHHCCCCCCCCCE
IKASDLIRDAGRVIHDAVRRLGDPDAFVGHIGGDDFVVIIGSRLVKAACTSIIHDIDAMI
EEHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
PAYYSDEDRAAGFIQGVDRYGVPRNFPLISISIAAMDCQPGRFSSAAEIATAAAAVKDRV
CCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
KEAKGSNYIIVREAGACEV
HHCCCCCEEEEECCCCCCC
>Mature Secondary Structure 
PLLPIPRLTLLAKLVLSFFISVSCMMAALYYSVNGLGAMHRMETEIARNDLTAATLTVS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHH
LREMMLAQQRYAGRYQILPQGEFKTLYDQNAEKFRGALTSLKQVYPGNNISLLEKQYARY
HHHHHHHHHHHCCCEEECCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
SRLTGRLFAGGAVDARAMKRVVAQIDDSIGRIRQDQLHSLEEKLRSSDEKVAATVSWSLG
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHH
FAIGGASLSLLIAGLMIYSFASSIRKLKTATHRIAAGEFDYDPRIPAGDEIGDLSRDFMA
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
MARRLKDLEQVCLDASPLTRLPGNIAIERSINRRLREGAAFAMCYLDLDNFKSYNDRYGY
HHHHHHHHHHHHCCCCCHHHCCCCEEEHHHHHHHHHHCCEEEEEEEEHHHCCCCCCCCCE
IKASDLIRDAGRVIHDAVRRLGDPDAFVGHIGGDDFVVIIGSRLVKAACTSIIHDIDAMI
EEHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
PAYYSDEDRAAGFIQGVDRYGVPRNFPLISISIAAMDCQPGRFSSAAEIATAAAAVKDRV
CCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
KEAKGSNYIIVREAGACEV
HHCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA