| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is 118580891
Identifier: 118580891
GI number: 118580891
Start: 2681105
End: 2683759
Strand: Reverse
Name: 118580891
Synonym: Ppro_2478
Alternate gene names: NA
Gene position: 2683759-2681105 (Counterclockwise)
Preceding gene: 118580893
Following gene: 118580890
Centisome position: 66.96
GC content: 61.32
Gene sequence:
>2655_bases ATGAGACTGAAACTGATAGCTGCGTTGTTGATTGTCCTGACGGTCTGCTCCGCGTGCGGTCGCAAGTCAAAGGAAGAGTT GCTGGCTGAAGGCATCAAACAGTTGGGTGCATCGAACCCCAGCGGTGCCGTCGTGCTTTTCAAGAATGCCCTTGAAAAGG ATGAGAACTACCTGGATGCCCGTTTCCAGTTGGCCAAGGCCTATGCCCGCCTGGGCAAGAACGAGCAGGCGGAGAGGGAG TTCCTGAAGGTTCTCAAGCAGAACCCGTCCCGTGACGAGGCGATCGTCGAGCTTGCCGCTGTCTACAATGCCACCCGCAA GGGAGATCAGGCCTTTGCCCTGGGGGAGCAGTACCTTGCCAAACACCCCGGTTCTGCGGAAGGGTTGGAGATCCTGGGCA TCGCCTGCGCGGTGACCAAGCGCTTTGACGATGCTGAACGTTATCTGCAGCAGGCCCTCGCCGCTTCCCCCTCCCGTTCG AAAACACGGCTTGAGCTTGCCGGCGTGTATGTGGCGGCCGGCAAGGAGCAGCAGGCAAAGGCTGTTCTGGAAGAACTGGT CCGAAGCGACCCGAAAAACTTCAAGGGCTTTTACATGCTGGCCGCCATAGAAAAATCGGGCGGCAATCGGGACCGGGCCC TGGAGATCTACACCAGGATACTCTCCATGGACAGGTCGGAGACCCTTGCGGCATACAAGTCAGGCCTGATTCAGATTGAG AAGGGTGATCTGCCGAAAGCCGACGGCATCGCCGACTCCATGATCAAGGAATTTCCCAAGCGCGCCGAAGGGCACCGTCT GAAGGGCCTGGTCCTGTACCAGCGCAAGCAGTATGCCGAGGCAATGACCAGCCTGCAGAACTCCATCAAGATCGCTCCCA CCCTGGAAGCCTATTACTTCATGGGGCTCTGCCAGTACGGCCGGGGGGAGCTGGAGAGCAGCCTGAGCCAGTTCCGCCAG GTCCTGGACAGGGTCCCCTCCTCCCGTCAGGCGCGGCTGATGACGGCCACCGTCCTTTTGGCCCAGAAACGCGTGGATGA CGCCATCGGCGAGATCAAAAAGGTGCTGCAGGCCGACGACAACGATGCGGTGGCCCACAACCTGCTGGGCAATGCCTACA TGGCCAAGGGGATGTTCGACGAGGGGATGCGCGAGCTGAACCGCGCCACGAGCATCGATCCCAGGATCGTGGATGCCTAC CTGAAGAAGGGCTACTTCTACTTCAGTCGCGGCAAGAACGCCGAAGGGGAGAGCGAGCTGGCAACCGCGGTGAAGGTCGC TCCCGATGCCCTGAACAGCAGGATGCTCCTGGCCTCGTACTACATGAGGTCGGGCAGCGCTCCCAAGGCCCTGAACGTCC TCAAGGGGGGGCTGAGCGGCAAAAAGGGTGATGCGCTCCTCTACAACAGCATTGCCTCGGTGCACCTCTCCCAGAACAGG CCTGATCTGGCCCTGGCGAGCATCCAGAAGGCCAAGCAGGTCGACCCCGCGTTTCCCGCCTCCTACCAGAACCTGGCCAC CTACTATGCCGCCTCGGGCAAGTACGACAATGCCATTGCCGAATACAGTGCACTGCTGCGCGTCGATCCCCGCAACCTGC GCGCCATGCTCGGTCTGGCCGCTTTGTACGAGATCAAGGGTAACGACCGCGAGGCGCTCGCCTTCTATGACAGGGCAACC GACACCGGCCAGCCCGCGGCTTTCCTGACAAAGGCCACCTACCTGGCCAAGAAGCGCGAAACCGGCAAGGCCATAAAGGT CGTTGACGAACTGCTCAAGAAGGATTCCCGTAATCTTGCGGCGCTTGAGATGAAGGGCCGCCTGCTGATGGTGGAAAAAG AGTACAAGCAGGCCGTCAAGGTCTTTGATGAGGTGGAAGCGGTCAAGCCGGATGCGGGCGTTGCCCTCAAGATCGGCGCC TACGTGGCAATGAAGGATACGTCCAAGGCCGTTTCCCAGGCCAGGGTCTTCATCGACAAGTATCCCCGCTCCGCCAGGGG CTATCTGGTGCTTGCCTCCGTCCACGAGAGCCTGGGTGACCGCAACCGCGCCATGGCCGAGGTCAGAAACGGCCTGCGGG TGGAACCGGGCAACGGGGAGGCTCTGGTCAGGCTGGGTAATCTGCTGGAGTCGGCCAGGGACCACAACCAGGCCATGGCC ATGTACGACGAGGCGCTGAAGAAGAATCCGAATTATGTGCCGGCCCTGTTCGCCCAGGGTGCGCTGCTGGACAGCACGGG CAAGAAGAAGGAGGCGGTGGCCAGGTACCGCGCCACCCTGGCCAAGTCGGAAACCTATGTGCCTGCCCTGAACAACCTGG CCTATCTGTGCGCCTCCGGCTTCGGCAGCAAAGAAGAGGCGCTCAGGCTGGCCGTCACCGCCTTCAAGCTGGAACCGGGA AACGCCGGAATCATGGATACGCTTGGCTTTGCCCTGCTGAAGAACAGGCGCCTGGATGACGCCGCCAAGGTGCTGGAACG GGCAAGCACCCTGCTGCCCACTAATCCCACCGTTACCTATCACCTGGCCCTGGTGTACGCGGAGCGGGGAGACAGGGCCA GGGCAACGACGCTGCTGCAGAAGTCGCTCTCCCAGGGTGCGTTTGCCGACGCTCCCGCGGCCAGGTCGCTCCTTGCCGGG TTGAGGAAGAGATAA
Upstream 100 bases:
>100_bases CGCACTGCCGGGAACGGGCCTGTGAAGACAGAGGTCGTTACGCCGACCACTGGTCTGTTTTCAAAATATCTACGATGATT TTCAGGGTAGGAGGGGTGGC
Downstream 100 bases:
>100_bases GAGGTTTCATGGGGGCTCGCGAGACCATTCTTGTCGCCGGAGACGTGCTGCTGGCAGCTGCCGCGCTGCTGCTGGCTGCG TGCGTCCGTTTCGGGTGGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 884; Mature: 884
Protein sequence:
>884_residues MRLKLIAALLIVLTVCSACGRKSKEELLAEGIKQLGASNPSGAVVLFKNALEKDENYLDARFQLAKAYARLGKNEQAERE FLKVLKQNPSRDEAIVELAAVYNATRKGDQAFALGEQYLAKHPGSAEGLEILGIACAVTKRFDDAERYLQQALAASPSRS KTRLELAGVYVAAGKEQQAKAVLEELVRSDPKNFKGFYMLAAIEKSGGNRDRALEIYTRILSMDRSETLAAYKSGLIQIE KGDLPKADGIADSMIKEFPKRAEGHRLKGLVLYQRKQYAEAMTSLQNSIKIAPTLEAYYFMGLCQYGRGELESSLSQFRQ VLDRVPSSRQARLMTATVLLAQKRVDDAIGEIKKVLQADDNDAVAHNLLGNAYMAKGMFDEGMRELNRATSIDPRIVDAY LKKGYFYFSRGKNAEGESELATAVKVAPDALNSRMLLASYYMRSGSAPKALNVLKGGLSGKKGDALLYNSIASVHLSQNR PDLALASIQKAKQVDPAFPASYQNLATYYAASGKYDNAIAEYSALLRVDPRNLRAMLGLAALYEIKGNDREALAFYDRAT DTGQPAAFLTKATYLAKKRETGKAIKVVDELLKKDSRNLAALEMKGRLLMVEKEYKQAVKVFDEVEAVKPDAGVALKIGA YVAMKDTSKAVSQARVFIDKYPRSARGYLVLASVHESLGDRNRAMAEVRNGLRVEPGNGEALVRLGNLLESARDHNQAMA MYDEALKKNPNYVPALFAQGALLDSTGKKKEAVARYRATLAKSETYVPALNNLAYLCASGFGSKEEALRLAVTAFKLEPG NAGIMDTLGFALLKNRRLDDAAKVLERASTLLPTNPTVTYHLALVYAERGDRARATTLLQKSLSQGAFADAPAARSLLAG LRKR
Sequences:
>Translated_884_residues MRLKLIAALLIVLTVCSACGRKSKEELLAEGIKQLGASNPSGAVVLFKNALEKDENYLDARFQLAKAYARLGKNEQAERE FLKVLKQNPSRDEAIVELAAVYNATRKGDQAFALGEQYLAKHPGSAEGLEILGIACAVTKRFDDAERYLQQALAASPSRS KTRLELAGVYVAAGKEQQAKAVLEELVRSDPKNFKGFYMLAAIEKSGGNRDRALEIYTRILSMDRSETLAAYKSGLIQIE KGDLPKADGIADSMIKEFPKRAEGHRLKGLVLYQRKQYAEAMTSLQNSIKIAPTLEAYYFMGLCQYGRGELESSLSQFRQ VLDRVPSSRQARLMTATVLLAQKRVDDAIGEIKKVLQADDNDAVAHNLLGNAYMAKGMFDEGMRELNRATSIDPRIVDAY LKKGYFYFSRGKNAEGESELATAVKVAPDALNSRMLLASYYMRSGSAPKALNVLKGGLSGKKGDALLYNSIASVHLSQNR PDLALASIQKAKQVDPAFPASYQNLATYYAASGKYDNAIAEYSALLRVDPRNLRAMLGLAALYEIKGNDREALAFYDRAT DTGQPAAFLTKATYLAKKRETGKAIKVVDELLKKDSRNLAALEMKGRLLMVEKEYKQAVKVFDEVEAVKPDAGVALKIGA YVAMKDTSKAVSQARVFIDKYPRSARGYLVLASVHESLGDRNRAMAEVRNGLRVEPGNGEALVRLGNLLESARDHNQAMA MYDEALKKNPNYVPALFAQGALLDSTGKKKEAVARYRATLAKSETYVPALNNLAYLCASGFGSKEEALRLAVTAFKLEPG NAGIMDTLGFALLKNRRLDDAAKVLERASTLLPTNPTVTYHLALVYAERGDRARATTLLQKSLSQGAFADAPAARSLLAG LRKR >Mature_884_residues MRLKLIAALLIVLTVCSACGRKSKEELLAEGIKQLGASNPSGAVVLFKNALEKDENYLDARFQLAKAYARLGKNEQAERE FLKVLKQNPSRDEAIVELAAVYNATRKGDQAFALGEQYLAKHPGSAEGLEILGIACAVTKRFDDAERYLQQALAASPSRS KTRLELAGVYVAAGKEQQAKAVLEELVRSDPKNFKGFYMLAAIEKSGGNRDRALEIYTRILSMDRSETLAAYKSGLIQIE KGDLPKADGIADSMIKEFPKRAEGHRLKGLVLYQRKQYAEAMTSLQNSIKIAPTLEAYYFMGLCQYGRGELESSLSQFRQ VLDRVPSSRQARLMTATVLLAQKRVDDAIGEIKKVLQADDNDAVAHNLLGNAYMAKGMFDEGMRELNRATSIDPRIVDAY LKKGYFYFSRGKNAEGESELATAVKVAPDALNSRMLLASYYMRSGSAPKALNVLKGGLSGKKGDALLYNSIASVHLSQNR PDLALASIQKAKQVDPAFPASYQNLATYYAASGKYDNAIAEYSALLRVDPRNLRAMLGLAALYEIKGNDREALAFYDRAT DTGQPAAFLTKATYLAKKRETGKAIKVVDELLKKDSRNLAALEMKGRLLMVEKEYKQAVKVFDEVEAVKPDAGVALKIGA YVAMKDTSKAVSQARVFIDKYPRSARGYLVLASVHESLGDRNRAMAEVRNGLRVEPGNGEALVRLGNLLESARDHNQAMA MYDEALKKNPNYVPALFAQGALLDSTGKKKEAVARYRATLAKSETYVPALNNLAYLCASGFGSKEEALRLAVTAFKLEPG NAGIMDTLGFALLKNRRLDDAAKVLERASTLLPTNPTVTYHLALVYAERGDRARATTLLQKSLSQGAFADAPAARSLLAG LRKR
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 9 TPR repeats [H]
Homologues:
Organism=Homo sapiens, GI32307148, Length=537, Percent_Identity=22.7188081936685, Blast_Score=105, Evalue=2e-22, Organism=Homo sapiens, GI32307150, Length=475, Percent_Identity=23.5789473684211, Blast_Score=105, Evalue=3e-22, Organism=Caenorhabditis elegans, GI115532692, Length=423, Percent_Identity=22.2222222222222, Blast_Score=86, Evalue=1e-16, Organism=Caenorhabditis elegans, GI115532690, Length=421, Percent_Identity=22.8028503562945, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI17647755, Length=540, Percent_Identity=21.8518518518519, Blast_Score=89, Evalue=1e-17, Organism=Drosophila melanogaster, GI24585827, Length=540, Percent_Identity=21.8518518518519, Blast_Score=89, Evalue=1e-17, Organism=Drosophila melanogaster, GI24585829, Length=540, Percent_Identity=21.8518518518519, Blast_Score=89, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008940 - InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF00515 TPR_1 [H]
EC number: NA
Molecular weight: Translated: 96752; Mature: 96752
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLKLIAALLIVLTVCSACGRKSKEELLAEGIKQLGASNPSGAVVLFKNALEKDENYLDA CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHCCCHHHHH RFQLAKAYARLGKNEQAEREFLKVLKQNPSRDEAIVELAAVYNATRKGDQAFALGEQYLA HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH KHPGSAEGLEILGIACAVTKRFDDAERYLQQALAASPSRSKTRLELAGVYVAAGKEQQAK CCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCHHHHH AVLEELVRSDPKNFKGFYMLAAIEKSGGNRDRALEIYTRILSMDRSETLAAYKSGLIQIE HHHHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCEEEE KGDLPKADGIADSMIKEFPKRAEGHRLKGLVLYQRKQYAEAMTSLQNSIKIAPTLEAYYF CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHCEEECCHHHHHHH MGLCQYGRGELESSLSQFRQVLDRVPSSRQARLMTATVLLAQKRVDDAIGEIKKVLQADD HHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC NDAVAHNLLGNAYMAKGMFDEGMRELNRATSIDPRIVDAYLKKGYFYFSRGKNAEGESEL CHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCCCCCHHHH ATAVKVAPDALNSRMLLASYYMRSGSAPKALNVLKGGLSGKKGDALLYNSIASVHLSQNR HHHHHHCHHHHCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHEEECCCC PDLALASIQKAKQVDPAFPASYQNLATYYAASGKYDNAIAEYSALLRVDPRNLRAMLGLA CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHEECHHHHHHHHHHH ALYEIKGNDREALAFYDRATDTGQPAAFLTKATYLAKKRETGKAIKVVDELLKKDSRNLA HHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEE ALEMKGRLLMVEKEYKQAVKVFDEVEAVKPDAGVALKIGAYVAMKDTSKAVSQARVFIDK EEEECCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECEEEEECCHHHHHHHHHHHHHH YPRSARGYLVLASVHESLGDRNRAMAEVRNGLRVEPGNGEALVRLGNLLESARDHNQAMA CCCCCCCEEEEEHHHHHHCHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHH MYDEALKKNPNYVPALFAQGALLDSTGKKKEAVARYRATLAKSETYVPALNNLAYLCASG HHHHHHHCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC FGSKEEALRLAVTAFKLEPGNAGIMDTLGFALLKNRRLDDAAKVLERASTLLPTNPTVTY CCCHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEE HLALVYAERGDRARATTLLQKSLSQGAFADAPAARSLLAGLRKR EEEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure MRLKLIAALLIVLTVCSACGRKSKEELLAEGIKQLGASNPSGAVVLFKNALEKDENYLDA CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHCCCHHHHH RFQLAKAYARLGKNEQAEREFLKVLKQNPSRDEAIVELAAVYNATRKGDQAFALGEQYLA HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH KHPGSAEGLEILGIACAVTKRFDDAERYLQQALAASPSRSKTRLELAGVYVAAGKEQQAK CCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCHHHHH AVLEELVRSDPKNFKGFYMLAAIEKSGGNRDRALEIYTRILSMDRSETLAAYKSGLIQIE HHHHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCEEEE KGDLPKADGIADSMIKEFPKRAEGHRLKGLVLYQRKQYAEAMTSLQNSIKIAPTLEAYYF CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHCEEECCHHHHHHH MGLCQYGRGELESSLSQFRQVLDRVPSSRQARLMTATVLLAQKRVDDAIGEIKKVLQADD HHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC NDAVAHNLLGNAYMAKGMFDEGMRELNRATSIDPRIVDAYLKKGYFYFSRGKNAEGESEL CHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCCCCCHHHH ATAVKVAPDALNSRMLLASYYMRSGSAPKALNVLKGGLSGKKGDALLYNSIASVHLSQNR HHHHHHCHHHHCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHEEECCCC PDLALASIQKAKQVDPAFPASYQNLATYYAASGKYDNAIAEYSALLRVDPRNLRAMLGLA CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHEECHHHHHHHHHHH ALYEIKGNDREALAFYDRATDTGQPAAFLTKATYLAKKRETGKAIKVVDELLKKDSRNLA HHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEE ALEMKGRLLMVEKEYKQAVKVFDEVEAVKPDAGVALKIGAYVAMKDTSKAVSQARVFIDK EEEECCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECEEEEECCHHHHHHHHHHHHHH YPRSARGYLVLASVHESLGDRNRAMAEVRNGLRVEPGNGEALVRLGNLLESARDHNQAMA CCCCCCCEEEEEHHHHHHCHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHH MYDEALKKNPNYVPALFAQGALLDSTGKKKEAVARYRATLAKSETYVPALNNLAYLCASG HHHHHHHCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC FGSKEEALRLAVTAFKLEPGNAGIMDTLGFALLKNRRLDDAAKVLERASTLLPTNPTVTY CCCHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEE HLALVYAERGDRARATTLLQKSLSQGAFADAPAARSLLAGLRKR EEEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087; 9697413 [H]