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The map label for this gene is dfrA [H]

Identifier: 118580812

GI number: 118580812

Start: 2595873

End: 2596253

Strand: Reverse

Name: dfrA [H]

Synonym: Ppro_2398

Alternate gene names: 118580812

Gene position: 2596253-2595873 (Counterclockwise)

Preceding gene: 118580813

Following gene: 118580810

Centisome position: 64.78

GC content: 63.52

Gene sequence:

>381_bases
TTGAAACTGGACGTGATATCGACGGATAAGGCGCCCGCAGCCATAGGACCCTATTCCCAGGCGGTGCGACTGGGGGATAT
TCTCTTCTGTTCCGGCCAGATACCGCTGGACCCGGCCACGGGCCAGGTGGTGGGTGGTGACGTGTCCGCGCAGGCAGTCC
GGGTGATGGAGAACATCTCCGCCGTGCTGGCCGTTGCCGATCGCGGGTTCGACGACGTGATCAAGACCACCATCTTTCTG
ACTGACATGGCCGACTTTGCGGTGGTGAACGAGGTCTACGGCCGCTACTTCAGCGGTCACAAACCGGCCCGCTCCACGGT
GGCGGTCAATGGGCTGCCCCGGGGGGTGCTGCTGGAGATCGAGGTGGTTGCCAGGGGGTGA

Upstream 100 bases:

>100_bases
ACATCTTCGAGGTGAGCGTGGTCGACCTGGCTCACCTGCAACGGGTTATGAACGCCCTGATGAAGGTCAAGGGTGTAATT
ACGGTGGAAAGGATGAAAAA

Downstream 100 bases:

>100_bases
GAGGCGGTATTCTGGTTCAAGGTTGAAAAAAAAGAGCCGCGGGCACCGAAGGTGCCGCGGCTCAGACAACTGCGAACTTT
GAACCCCGAACCGCTTTTTA

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MKLDVISTDKAPAAIGPYSQAVRLGDILFCSGQIPLDPATGQVVGGDVSAQAVRVMENISAVLAVADRGFDDVIKTTIFL
TDMADFAVVNEVYGRYFSGHKPARSTVAVNGLPRGVLLEIEVVARG

Sequences:

>Translated_126_residues
MKLDVISTDKAPAAIGPYSQAVRLGDILFCSGQIPLDPATGQVVGGDVSAQAVRVMENISAVLAVADRGFDDVIKTTIFL
TDMADFAVVNEVYGRYFSGHKPARSTVAVNGLPRGVLLEIEVVARG
>Mature_126_residues
MKLDVISTDKAPAAIGPYSQAVRLGDILFCSGQIPLDPATGQVVGGDVSAQAVRVMENISAVLAVADRGFDDVIKTTIFL
TDMADFAVVNEVYGRYFSGHKPARSTVAVNGLPRGVLLEIEVVARG

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=120, Percent_Identity=48.3333333333333, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI87082213, Length=123, Percent_Identity=47.9674796747967, Blast_Score=116, Evalue=5e-28,
Organism=Escherichia coli, GI87082396, Length=122, Percent_Identity=47.5409836065574, Blast_Score=115, Evalue=1e-27,
Organism=Escherichia coli, GI1787245, Length=125, Percent_Identity=28.8, Blast_Score=64, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=121, Percent_Identity=48.7603305785124, Blast_Score=117, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71982068, Length=121, Percent_Identity=48.7603305785124, Blast_Score=117, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI25148896, Length=121, Percent_Identity=48.7603305785124, Blast_Score=117, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6322138, Length=122, Percent_Identity=42.6229508196721, Blast_Score=109, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6320899, Length=103, Percent_Identity=43.6893203883495, Blast_Score=97, Evalue=1e-21,
Organism=Drosophila melanogaster, GI19921376, Length=120, Percent_Identity=45.8333333333333, Blast_Score=102, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13263; Mature: 13263

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLDVISTDKAPAAIGPYSQAVRLGDILFCSGQIPLDPATGQVVGGDVSAQAVRVMENIS
CEEEEECCCCCCCCCCCHHHHEEECEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHHH
AVLAVADRGFDDVIKTTIFLTDMADFAVVNEVYGRYFSGHKPARSTVAVNGLPRGVLLEI
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCEEEEE
EVVARG
EEEECC
>Mature Secondary Structure
MKLDVISTDKAPAAIGPYSQAVRLGDILFCSGQIPLDPATGQVVGGDVSAQAVRVMENIS
CEEEEECCCCCCCCCCCHHHHEEECEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHHH
AVLAVADRGFDDVIKTTIFLTDMADFAVVNEVYGRYFSGHKPARSTVAVNGLPRGVLLEI
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCEEEEE
EVVARG
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA