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The map label for this gene is ybbD [H]

Identifier: 118580772

GI number: 118580772

Start: 2548674

End: 2549855

Strand: Direct

Name: ybbD [H]

Synonym: Ppro_2357

Alternate gene names: 118580772

Gene position: 2548674-2549855 (Clockwise)

Preceding gene: 118580762

Following gene: 118580774

Centisome position: 63.59

GC content: 57.7

Gene sequence:

>1182_bases
ATGCACTGCAACTCGTTTTCCAGGCAGCACCGTTTTTCGCTCCATGTGGCAATGACTGCGTTGACCCTGCTGCTTCTGGG
TTTGCTGGCCGGATGTGCCGCAACGTCAAGCGCCGTCACGAGCAAACTACCCGACTGGCGTTCCTGGACAGTGGAGCGCA
AAATTGCCCAGATGCTTCTGCTCGGTTTCCCTGGAGAGACGATTACTCCGGAAAGCCCTATTTCTGTGGCTATCCGCGAG
CATGGCGTGGGCGGGGTCGTCCTTTTCGACAACAATGCCGACCTGGGTGTTACGGAGCGCAATATTTCCAACCCGGCTCA
GCTAAAGAGGCTGATCACCGACCTTAAGGCATCGGCTGAAACGCCGATTTTCATTGCCGTGGATGAAGAGGGAGGGATCA
TCTCCCGCCTCAAGGAGCGCTACGGGTTTCCGTCCACGGTCTCCGCTTCATACCTTGGGGAGAAGAATGACTTAAACCTC
ACCCGTTCTTCCTCGGACCGACTGGTCGACACCCTGGTGGAATACGGCTTCAACCTGAACCTGGCGCCGGTGGTCGACCT
GAGCATCAACCCCGCAAACCCGGTCATTGCGCTGAAACAGCGCAGCTTTTCCGCCGACCCGGCCCTGGTTTCCGCCCACG
CGGCAGAAGTCATCGCGAGCCACCACCGCAAGAATATCGTCACCTGCCTGAAGCACTTTCCAGGGCACGGCAGCTCGCGC
GACGATTCCCATGTGGGGTTCGTCGATGTCACCGACAGCTGGAGCGAGAAAGAACTGTTGCCCTACAAAAACCTGATCGG
GCAAGGGGTGGTGGATAGTGTGATGACAGCCCACACCTTCAACACACATCTCGACCCGGACTATCCGGCAACGCTCTCCA
GGAACACCATAGACGGCATACTGCGCACGCGGCTCGGCTTCGACGGAGTGGTCATCAGCGATGACCTCTACATGGCAGCG
ATTGTTCAGCATTACAGCTATGAGACCGCTGTGGAAAAAGCCATCAACGCCGGGGTCGACCTGCTGATCCTGGCCAACGA
CAAGCTCTACAGCCCGGACATAGCTCCGCGCACCATCGATCTTGTGGTGAAGATGGTGGAGAGCGGGAAAATCAGCAGGG
AGCGCATCGACCAGGCCTGCGGCCGGATCATGAAACTGAAGGCGAGATACCTCTTTGAATAA

Upstream 100 bases:

>100_bases
ATGCCGCCCGCCAATAAAATCAAAGGGTTAGTCAAATCGACTAATCCTTTTTTTGTTACAGCGACATATGACGGAGTAAC
TATCACTATGAGGTGACCCG

Downstream 100 bases:

>100_bases
CTACTGTGGAGGATCCGGGGGAAAGCTGACGGGATAGATGCGGCCCACGGAAAAAACGCCTGGACACGCCTCGCATCAAC
GCAAGAAGGCTTCACGGCAT

Product: glycoside hydrolase family 3 protein

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MHCNSFSRQHRFSLHVAMTALTLLLLGLLAGCAATSSAVTSKLPDWRSWTVERKIAQMLLLGFPGETITPESPISVAIRE
HGVGGVVLFDNNADLGVTERNISNPAQLKRLITDLKASAETPIFIAVDEEGGIISRLKERYGFPSTVSASYLGEKNDLNL
TRSSSDRLVDTLVEYGFNLNLAPVVDLSINPANPVIALKQRSFSADPALVSAHAAEVIASHHRKNIVTCLKHFPGHGSSR
DDSHVGFVDVTDSWSEKELLPYKNLIGQGVVDSVMTAHTFNTHLDPDYPATLSRNTIDGILRTRLGFDGVVISDDLYMAA
IVQHYSYETAVEKAINAGVDLLILANDKLYSPDIAPRTIDLVVKMVESGKISRERIDQACGRIMKLKARYLFE

Sequences:

>Translated_393_residues
MHCNSFSRQHRFSLHVAMTALTLLLLGLLAGCAATSSAVTSKLPDWRSWTVERKIAQMLLLGFPGETITPESPISVAIRE
HGVGGVVLFDNNADLGVTERNISNPAQLKRLITDLKASAETPIFIAVDEEGGIISRLKERYGFPSTVSASYLGEKNDLNL
TRSSSDRLVDTLVEYGFNLNLAPVVDLSINPANPVIALKQRSFSADPALVSAHAAEVIASHHRKNIVTCLKHFPGHGSSR
DDSHVGFVDVTDSWSEKELLPYKNLIGQGVVDSVMTAHTFNTHLDPDYPATLSRNTIDGILRTRLGFDGVVISDDLYMAA
IVQHYSYETAVEKAINAGVDLLILANDKLYSPDIAPRTIDLVVKMVESGKISRERIDQACGRIMKLKARYLFE
>Mature_393_residues
MHCNSFSRQHRFSLHVAMTALTLLLLGLLAGCAATSSAVTSKLPDWRSWTVERKIAQMLLLGFPGETITPESPISVAIRE
HGVGGVVLFDNNADLGVTERNISNPAQLKRLITDLKASAETPIFIAVDEEGGIISRLKERYGFPSTVSASYLGEKNDLNL
TRSSSDRLVDTLVEYGFNLNLAPVVDLSINPANPVIALKQRSFSADPALVSAHAAEVIASHHRKNIVTCLKHFPGHGSSR
DDSHVGFVDVTDSWSEKELLPYKNLIGQGVVDSVMTAHTFNTHLDPDYPATLSRNTIDGILRTRLGFDGVVISDDLYMAA
IVQHYSYETAVEKAINAGVDLLILANDKLYSPDIAPRTIDLVVKMVESGKISRERIDQACGRIMKLKARYLFE

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=303, Percent_Identity=29.3729372937294, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI1788453, Length=354, Percent_Identity=21.1864406779661, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 43037; Mature: 43037

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHCNSFSRQHRFSLHVAMTALTLLLLGLLAGCAATSSAVTSKLPDWRSWTVERKIAQMLL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LGFPGETITPESPISVAIREHGVGGVVLFDNNADLGVTERNISNPAQLKRLITDLKASAE
HCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
TPIFIAVDEEGGIISRLKERYGFPSTVSASYLGEKNDLNLTRSSSDRLVDTLVEYGFNLN
CCEEEEECCCCCHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHHHHHHHHHCCCCCC
LAPVVDLSINPANPVIALKQRSFSADPALVSAHAAEVIASHHRKNIVTCLKHFPGHGSSR
CCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DDSHVGFVDVTDSWSEKELLPYKNLIGQGVVDSVMTAHTFNTHLDPDYPATLSRNTIDGI
CCCCEEEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
LRTRLGFDGVVISDDLYMAAIVQHYSYETAVEKAINAGVDLLILANDKLYSPDIAPRTID
HHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHH
LVVKMVESGKISRERIDQACGRIMKLKARYLFE
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHCNSFSRQHRFSLHVAMTALTLLLLGLLAGCAATSSAVTSKLPDWRSWTVERKIAQMLL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LGFPGETITPESPISVAIREHGVGGVVLFDNNADLGVTERNISNPAQLKRLITDLKASAE
HCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
TPIFIAVDEEGGIISRLKERYGFPSTVSASYLGEKNDLNLTRSSSDRLVDTLVEYGFNLN
CCEEEEECCCCCHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHHHHHHHHHCCCCCC
LAPVVDLSINPANPVIALKQRSFSADPALVSAHAAEVIASHHRKNIVTCLKHFPGHGSSR
CCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DDSHVGFVDVTDSWSEKELLPYKNLIGQGVVDSVMTAHTFNTHLDPDYPATLSRNTIDGI
CCCCEEEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
LRTRLGFDGVVISDDLYMAAIVQHYSYETAVEKAINAGVDLLILANDKLYSPDIAPRTID
HHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHH
LVVKMVESGKISRERIDQACGRIMKLKARYLFE
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]