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The map label for this gene is rtcB [C]

Identifier: 118580558

GI number: 118580558

Start: 2297460

End: 2298917

Strand: Direct

Name: rtcB [C]

Synonym: Ppro_2142

Alternate gene names: 118580558

Gene position: 2297460-2298917 (Clockwise)

Preceding gene: 118580557

Following gene: 118580559

Centisome position: 57.32

GC content: 62.89

Gene sequence:

>1458_bases
ATGCCCGTACCTCCCCAGCTTCGCCAGATATCAGAAACAATATGGGAACTGCCCCGCTCCTTTCGCGACGGCATGCTGGT
GCCGGCGCGCTTTATCACGTCGGAGAAGCTCCTGGCCGGACTGGAGAGCGGCGTGTTCGAGCAGACCGCCAACGTGGCCT
GCCTGCCGGGCATCCTTAAGTACTCCTTCTGCATGCCGGACGGCCACTGGGGCTACGGTTTCCCCATCGGAGGGGTGGCT
GCCATGGATTCAGACAGCGGAGTCATCTCTCCCGGCGGTATCGGCTTCGACATCAACTGCGGCATGCGCCTGCTGCTCAC
CAACCTCACCGAAGAGGAGGTCAGGCCAGTTATCAAGGAGCTGGTGGACAGCCTGTTCAGCCGCATCCCCACCGGCGTCG
GCTGCAGCGGCTTCATCCACTGTTCCCGCAGCGAGTTCCGCAAGCTGCTTACGGAGGGGTCACGCTGGTGCCTTAAAAAC
GGCTTTGCCTGGCCCGAAGACCTGGAGTTGACCGAAGAGGGGGGCTGCTTCGAGGGCGCCGACCCTGGGGCCTGCAGCGA
CAAGGCCGTCGAGCGTGGCTACGACCAGGTCGGCACCCTGGGAAGCGGGAATCACTACTGCGAGATCCAGGTGGTGCGGC
CGGAGAATGTTTTCGACAACAAGACGGCGGCTGCCTTCGGCCTGACCATACCCAACCAGGTGGTGATCAGCTTCCACAGC
GGCAGCCGCGGATTCGGCCACCAGGTGGCCACCGACTATCTTGCGACGTTCCTGCGGGTGATGACCGGCACATACGGCAT
CAGGACCAACGACCGCGAACTGGCCTGTGCTCCTTTCCGTTCCCCCGATGGACAGGCCTACTTTGCTGCCATGAAGTGCG
CCGTCAACATGGGATTTGCCAACCGCCAGATGATACTGCACCGCATCCGCGAGGTATTCTCCCGCGTCTTCAACCGCTCT
CCCCAGGATCTAGGCATGGGCATGGTCTACGATGTGGCCCACAACACCGCCAAGCTGGAAACCCATGAGATAGACGGCGA
AAAGCGGGAGGTGCTGGTGCACCGCAAGGGGGCCACGCGCTGCTACGGCCCCGCCATGGCCGGAATACCCGCGCGCTACC
AAGAGACGGGGCAGCCGGTGATCATCGGCGGCAGCATGGAGACCGGCTCCTTTCTCCTGGCCGGAGAGTCAAGCGCGGCA
TCCACCTTTTTCACCACGGCCCACGGCAGCGGCAGGACCATGAGTCGCCACCAGGCTAAGAAAATGGTAAAGGGGCAAAA
GCTTCTGGGTGAGATGGAGCAGCGCGGCATCCACGTGCGCACCTCCACCTATGGAGGGCTGGCCGAGGAGGCAGGCTTCG
CCTACAAGGATATGGACGAGGTTGCCTCGGCCACCGAGATGGCGGGGTTGAGCCGGAGAGTAGCCAAACTGCTCCCCATG
GGGAACATCAAGGGGTAG

Upstream 100 bases:

>100_bases
TTTTCGCTCCATTTCGCCGGGAACCACGACGGATCAAGGATAAGTCGCTCTCCACGGACAGATCCACCTGTCGGACAACA
AGCACACCACGGAGGATGCC

Downstream 100 bases:

>100_bases
CCATGCCGTTCCGTTTTCTGGAGCATATCGCCACGGCGGACGTGGCCTTCGAATCATGGGGAGAGACGCTGGAAGAGCTG
TTCGTTTCCAGCGCCGCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 485; Mature: 484

Protein sequence:

>485_residues
MPVPPQLRQISETIWELPRSFRDGMLVPARFITSEKLLAGLESGVFEQTANVACLPGILKYSFCMPDGHWGYGFPIGGVA
AMDSDSGVISPGGIGFDINCGMRLLLTNLTEEEVRPVIKELVDSLFSRIPTGVGCSGFIHCSRSEFRKLLTEGSRWCLKN
GFAWPEDLELTEEGGCFEGADPGACSDKAVERGYDQVGTLGSGNHYCEIQVVRPENVFDNKTAAAFGLTIPNQVVISFHS
GSRGFGHQVATDYLATFLRVMTGTYGIRTNDRELACAPFRSPDGQAYFAAMKCAVNMGFANRQMILHRIREVFSRVFNRS
PQDLGMGMVYDVAHNTAKLETHEIDGEKREVLVHRKGATRCYGPAMAGIPARYQETGQPVIIGGSMETGSFLLAGESSAA
STFFTTAHGSGRTMSRHQAKKMVKGQKLLGEMEQRGIHVRTSTYGGLAEEAGFAYKDMDEVASATEMAGLSRRVAKLLPM
GNIKG

Sequences:

>Translated_485_residues
MPVPPQLRQISETIWELPRSFRDGMLVPARFITSEKLLAGLESGVFEQTANVACLPGILKYSFCMPDGHWGYGFPIGGVA
AMDSDSGVISPGGIGFDINCGMRLLLTNLTEEEVRPVIKELVDSLFSRIPTGVGCSGFIHCSRSEFRKLLTEGSRWCLKN
GFAWPEDLELTEEGGCFEGADPGACSDKAVERGYDQVGTLGSGNHYCEIQVVRPENVFDNKTAAAFGLTIPNQVVISFHS
GSRGFGHQVATDYLATFLRVMTGTYGIRTNDRELACAPFRSPDGQAYFAAMKCAVNMGFANRQMILHRIREVFSRVFNRS
PQDLGMGMVYDVAHNTAKLETHEIDGEKREVLVHRKGATRCYGPAMAGIPARYQETGQPVIIGGSMETGSFLLAGESSAA
STFFTTAHGSGRTMSRHQAKKMVKGQKLLGEMEQRGIHVRTSTYGGLAEEAGFAYKDMDEVASATEMAGLSRRVAKLLPM
GNIKG
>Mature_484_residues
PVPPQLRQISETIWELPRSFRDGMLVPARFITSEKLLAGLESGVFEQTANVACLPGILKYSFCMPDGHWGYGFPIGGVAA
MDSDSGVISPGGIGFDINCGMRLLLTNLTEEEVRPVIKELVDSLFSRIPTGVGCSGFIHCSRSEFRKLLTEGSRWCLKNG
FAWPEDLELTEEGGCFEGADPGACSDKAVERGYDQVGTLGSGNHYCEIQVVRPENVFDNKTAAAFGLTIPNQVVISFHSG
SRGFGHQVATDYLATFLRVMTGTYGIRTNDRELACAPFRSPDGQAYFAAMKCAVNMGFANRQMILHRIREVFSRVFNRSP
QDLGMGMVYDVAHNTAKLETHEIDGEKREVLVHRKGATRCYGPAMAGIPARYQETGQPVIIGGSMETGSFLLAGESSAAS
TFFTTAHGSGRTMSRHQAKKMVKGQKLLGEMEQRGIHVRTSTYGGLAEEAGFAYKDMDEVASATEMAGLSRRVAKLLPMG
NIKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=501, Percent_Identity=42.1157684630739, Blast_Score=392, Evalue=1e-109,
Organism=Escherichia coli, GI2367224, Length=431, Percent_Identity=29.2343387470998, Blast_Score=127, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17506665, Length=498, Percent_Identity=41.3654618473896, Blast_Score=382, Evalue=1e-106,
Organism=Drosophila melanogaster, GI24585217, Length=498, Percent_Identity=43.1726907630522, Blast_Score=399, Evalue=1e-111,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 52777; Mature: 52646

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVPPQLRQISETIWELPRSFRDGMLVPARFITSEKLLAGLESGVFEQTANVACLPGILK
CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHH
YSFCMPDGHWGYGFPIGGVAAMDSDSGVISPGGIGFDINCGMRLLLTNLTEEEVRPVIKE
HEEECCCCCCCCCCCCCCEEEECCCCCEECCCCCCEECCCCCEEHHHHCCHHHHHHHHHH
LVDSLFSRIPTGVGCSGFIHCSRSEFRKLLTEGSRWCLKNGFAWPEDLELTEEGGCFEGA
HHHHHHHHCCCCCCCCCEEECCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
DPGACSDKAVERGYDQVGTLGSGNHYCEIQVVRPENVFDNKTAAAFGLTIPNQVVISFHS
CCCCCCHHHHHCCHHHHCCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEEC
GSRGFGHQVATDYLATFLRVMTGTYGIRTNDRELACAPFRSPDGQAYFAAMKCAVNMGFA
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCC
NRQMILHRIREVFSRVFNRSPQDLGMGMVYDVAHNTAKLETHEIDGEKREVLVHRKGATR
HHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEHHCCCCEEEEEECCCCCCEEEEECCCCCC
CYGPAMAGIPARYQETGQPVIIGGSMETGSFLLAGESSAASTFFTTAHGSGRTMSRHQAK
CCCCHHCCCCCHHHHCCCEEEEECCCCCCCEEEECCCCCCCEEEEECCCCCCCHHHHHHH
KMVKGQKLLGEMEQRGIHVRTSTYGGLAEEAGFAYKDMDEVASATEMAGLSRRVAKLLPM
HHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
GNIKG
CCCCC
>Mature Secondary Structure 
PVPPQLRQISETIWELPRSFRDGMLVPARFITSEKLLAGLESGVFEQTANVACLPGILK
CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHH
YSFCMPDGHWGYGFPIGGVAAMDSDSGVISPGGIGFDINCGMRLLLTNLTEEEVRPVIKE
HEEECCCCCCCCCCCCCCEEEECCCCCEECCCCCCEECCCCCEEHHHHCCHHHHHHHHHH
LVDSLFSRIPTGVGCSGFIHCSRSEFRKLLTEGSRWCLKNGFAWPEDLELTEEGGCFEGA
HHHHHHHHCCCCCCCCCEEECCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
DPGACSDKAVERGYDQVGTLGSGNHYCEIQVVRPENVFDNKTAAAFGLTIPNQVVISFHS
CCCCCCHHHHHCCHHHHCCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEEC
GSRGFGHQVATDYLATFLRVMTGTYGIRTNDRELACAPFRSPDGQAYFAAMKCAVNMGFA
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCC
NRQMILHRIREVFSRVFNRSPQDLGMGMVYDVAHNTAKLETHEIDGEKREVLVHRKGATR
HHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEHHCCCCEEEEEECCCCCCEEEEECCCCCC
CYGPAMAGIPARYQETGQPVIIGGSMETGSFLLAGESSAASTFFTTAHGSGRTMSRHQAK
CCCCHHCCCCCHHHHCCCEEEEECCCCCCCEEEECCCCCCCEEEEECCCCCCCHHHHHHH
KMVKGQKLLGEMEQRGIHVRTSTYGGLAEEAGFAYKDMDEVASATEMAGLSRRVAKLLPM
HHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
GNIKG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA