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The map label for this gene is intF [H]

Identifier: 118580552

GI number: 118580552

Start: 2291587

End: 2292756

Strand: Reverse

Name: intF [H]

Synonym: Ppro_2136

Alternate gene names: 118580552

Gene position: 2292756-2291587 (Counterclockwise)

Preceding gene: 118580553

Following gene: 118580551

Centisome position: 57.2

GC content: 57.86

Gene sequence:

>1170_bases
ATGCCGGAGAAAATCAGGCTTACGCAGAAACGAGTTGCAGACCTTCAACCGGTGGCTGGTAAGCAGTTCGATGTCTGGGA
TGCTGAACAACCGCGCTTTGCCGTCCGCGTCTCTCCGAGGGGCCGCAAGACCTTCTTTGTCATGCGCCGCGTCAAGGGGA
AGCTGGTACGCGCCACCGTGGGAACCTTTCCGGAGATGAATGTCGATACCGCTCGCAAGATGGCCGCAGAGATGTTGGTG
TCGATGACGGCAGGTGTCAACCCAAATATAGAACGGAAGCGAGAACGGGCGCAACAGAAAGACAAGAGTCGTCTGCTTTC
GGCTGTGTTTGACTCATATCTTGCGTCTGGCGGCAAGGATGGCGACATAAAGGCATCGACCAAGGCCGCGTATCGTTCGG
CCTTCAGGCGTCTTGAAAAGTGGCAGGAGCTGAAGATTGATGAGATCGAGTCTGAGATGGTGGAACAGCTCCATGTAAGC
ATTGTGAAGGATTGCGGCGGGTATGCCGCCAATCATTCCATTGGGCTGCTGCGAGCACTGATGAAGTTCGCCAAGGTGGA
GGGCAATCCCGCCGCGGACGTGGCATGGGCCAAGGAGACCCCCAGGCGGGAAGCGATGCCGCCGGAGGCGATCCCCGGAT
TCCTTAAAGCACTGGATCAACTGAAGGGTGATAACGGCTCTGACCTGTTCAGGGTGTTACTGTTCACCGGCATGAGGAAA
AGTGAGGCCATGGGCCTACGCTGGATCGACATTGACCTTGAAAACAAGTCGCTGCACATCGAGGAGACCAAAACGGGACC
GCCCTTAAACATCCCCATCTCTGGCCACCTGGCGGCGATCCTGGAGAAGCGTAAAGAGCGGATCAGCTCGCCATGGGTGT
TCCCCAGCAACAGCCGGGTAGGGCACCTGACGAACGATCAGCAGTTCTGTCGGGAGCTGGCCGCACTTGGCGTGAGGGTA
TACCCGCACCTGCTGCGGAAGACCTTCACCACCATAGCGGCGTCACTCATCCCCGGCGCGATGGTGGACTGTCTGACCGG
CCATGTCCCCCAAGACGTGACGGGAAGGCATTACACGTTCCCCTCCGTGGGGCAACTCAGGCCGCATACCGAGGCCGTGA
CAAAGGAGATTTTGAGTCTGGCGGGGATTACGACCAGGTCAATCAAGTAA

Upstream 100 bases:

>100_bases
CCTTGTTATTGACTGTTTACCTCCTTTGTTGTTACCTTATTGTTACCTTGACGGTGTTTTTATGGCTTTGATCGTTTTCA
AGGTAACAAAAGGGGGCGCT

Downstream 100 bases:

>100_bases
TTGACAATGTACTCTAGAAAGGTACAATAAGCCATGTCATGGACAGTCAACTACTGCCGGGCCGCTGAAAAACAGCAGCA
GAAGCTACCGGAAAGAATCA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MPEKIRLTQKRVADLQPVAGKQFDVWDAEQPRFAVRVSPRGRKTFFVMRRVKGKLVRATVGTFPEMNVDTARKMAAEMLV
SMTAGVNPNIERKRERAQQKDKSRLLSAVFDSYLASGGKDGDIKASTKAAYRSAFRRLEKWQELKIDEIESEMVEQLHVS
IVKDCGGYAANHSIGLLRALMKFAKVEGNPAADVAWAKETPRREAMPPEAIPGFLKALDQLKGDNGSDLFRVLLFTGMRK
SEAMGLRWIDIDLENKSLHIEETKTGPPLNIPISGHLAAILEKRKERISSPWVFPSNSRVGHLTNDQQFCRELAALGVRV
YPHLLRKTFTTIAASLIPGAMVDCLTGHVPQDVTGRHYTFPSVGQLRPHTEAVTKEILSLAGITTRSIK

Sequences:

>Translated_389_residues
MPEKIRLTQKRVADLQPVAGKQFDVWDAEQPRFAVRVSPRGRKTFFVMRRVKGKLVRATVGTFPEMNVDTARKMAAEMLV
SMTAGVNPNIERKRERAQQKDKSRLLSAVFDSYLASGGKDGDIKASTKAAYRSAFRRLEKWQELKIDEIESEMVEQLHVS
IVKDCGGYAANHSIGLLRALMKFAKVEGNPAADVAWAKETPRREAMPPEAIPGFLKALDQLKGDNGSDLFRVLLFTGMRK
SEAMGLRWIDIDLENKSLHIEETKTGPPLNIPISGHLAAILEKRKERISSPWVFPSNSRVGHLTNDQQFCRELAALGVRV
YPHLLRKTFTTIAASLIPGAMVDCLTGHVPQDVTGRHYTFPSVGQLRPHTEAVTKEILSLAGITTRSIK
>Mature_388_residues
PEKIRLTQKRVADLQPVAGKQFDVWDAEQPRFAVRVSPRGRKTFFVMRRVKGKLVRATVGTFPEMNVDTARKMAAEMLVS
MTAGVNPNIERKRERAQQKDKSRLLSAVFDSYLASGGKDGDIKASTKAAYRSAFRRLEKWQELKIDEIESEMVEQLHVSI
VKDCGGYAANHSIGLLRALMKFAKVEGNPAADVAWAKETPRREAMPPEAIPGFLKALDQLKGDNGSDLFRVLLFTGMRKS
EAMGLRWIDIDLENKSLHIEETKTGPPLNIPISGHLAAILEKRKERISSPWVFPSNSRVGHLTNDQQFCRELAALGVRVY
PHLLRKTFTTIAASLIPGAMVDCLTGHVPQDVTGRHYTFPSVGQLRPHTEAVTKEILSLAGITTRSIK

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI2367104, Length=425, Percent_Identity=24.7058823529412, Blast_Score=99, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43407; Mature: 43276

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEKIRLTQKRVADLQPVAGKQFDVWDAEQPRFAVRVSPRGRKTFFVMRRVKGKLVRATV
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH
GTFPEMNVDTARKMAAEMLVSMTAGVNPNIERKRERAQQKDKSRLLSAVFDSYLASGGKD
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GDIKASTKAAYRSAFRRLEKWQELKIDEIESEMVEQLHVSIVKDCGGYAANHSIGLLRAL
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
MKFAKVEGNPAADVAWAKETPRREAMPPEAIPGFLKALDQLKGDNGSDLFRVLLFTGMRK
HHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
SEAMGLRWIDIDLENKSLHIEETKTGPPLNIPISGHLAAILEKRKERISSPWVFPSNSRV
HHCCCEEEEEEEECCCEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
GHLTNDQQFCRELAALGVRVYPHLLRKTFTTIAASLIPGAMVDCLTGHVPQDVTGRHYTF
CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PSVGQLRPHTEAVTKEILSLAGITTRSIK
CCCCCCCCHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure 
PEKIRLTQKRVADLQPVAGKQFDVWDAEQPRFAVRVSPRGRKTFFVMRRVKGKLVRATV
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH
GTFPEMNVDTARKMAAEMLVSMTAGVNPNIERKRERAQQKDKSRLLSAVFDSYLASGGKD
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GDIKASTKAAYRSAFRRLEKWQELKIDEIESEMVEQLHVSIVKDCGGYAANHSIGLLRAL
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
MKFAKVEGNPAADVAWAKETPRREAMPPEAIPGFLKALDQLKGDNGSDLFRVLLFTGMRK
HHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
SEAMGLRWIDIDLENKSLHIEETKTGPPLNIPISGHLAAILEKRKERISSPWVFPSNSRV
HHCCCEEEEEEEECCCEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
GHLTNDQQFCRELAALGVRVYPHLLRKTFTTIAASLIPGAMVDCLTGHVPQDVTGRHYTF
CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PSVGQLRPHTEAVTKEILSLAGITTRSIK
CCCCCCCCHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]