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The map label for this gene is rfbA [H]

Identifier: 118580525

GI number: 118580525

Start: 2269340

End: 2270176

Strand: Reverse

Name: rfbA [H]

Synonym: Ppro_2109

Alternate gene names: 118580525

Gene position: 2270176-2269340 (Counterclockwise)

Preceding gene: 118580526

Following gene: 118580524

Centisome position: 56.64

GC content: 58.78

Gene sequence:

>837_bases
ATGGCTGAGATGATTGGGCGTGACGAGATCGTCATCAGGCCGGGCATGGGAGCGCTGCACTATTGGCGCGACATCTGGCG
CTACCGGGAACTGTTCTATTTCCTGGCCTGGCGGGATATTCTTGTGCGCTACAAGCAGACCGCCATCGGCATTGCCTGGA
GCGTGTTGCGCCCCCTGGCAACCATGCTGGTCTTCACCATCGTCTTTGGAAAACTGGCCAAACTCCCCTCCAACGGCGTT
CCCTACCCGGTGATGGTTTTCAGCGCCATGCTCCCCTGGCAGTTCTTCGCCAACTCCCTGACCGAGAGCAGCAATTCACT
GATCGACAATGCAAATCTGTTGACAAAGGTCTATTTCCCCCGCCTGATCGTGCCGGCCGGTTCGGTGATCGTCAGCCTGG
TGGACTTTCTGATCTCTTTCGTTATCCTCTGCTGTCTGATGGCGTGGTACCGCGTCATCCCCGATCTGAAGCTGTTGCTG
CTGCCGCTGTTCCTGGCCATGGCCTTCCTGGCATCCTTCGGCGCCGGACTATGGCTTTCCGCCCTGAACGTGCAGTACCG
GGACTTCCGCTACGTTGTCCCCTTTCTGGTGCAGTTCGGCCTCTACATCTCGCCGGTGGGCTTCTCCAGCTCCATCGTGC
CGGAAGAGTGGCGCTTCTTCTACTTCCTCAACCCCATGGTGGGGGTGATCGACGGCTTCCGCTGGGTACTTCTTGGGGAC
GCCTTCCCGGTGAACTGGCCCGGCCTGTGCCTCTCCGCCGCGTTGACGCTTCTCATGTTTGCGGGAGGACTGTGGTACTT
CAGGAATATGGAACGCTCCTTTGCCGATGTGGTATAA

Upstream 100 bases:

>100_bases
TACCTGCTTCCGGTCAGGCGTTTCCGTGAGATGGGACGCTTCGGCCTGGGATTTCTGATGGGAGTTGTCATGTCGCCGTT
TAAAAGGGATGGATATCGCT

Downstream 100 bases:

>100_bases
GGGCAAAACCCGCCTCCCGCAAAGCCGCGAAGGCGCAAAGGGAACCGAGAAGCCAAAATGTTTGAGAGAAAGAGTCTTAT
TTTTCGGTTGGTTACGGTCT

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MAEMIGRDEIVIRPGMGALHYWRDIWRYRELFYFLAWRDILVRYKQTAIGIAWSVLRPLATMLVFTIVFGKLAKLPSNGV
PYPVMVFSAMLPWQFFANSLTESSNSLIDNANLLTKVYFPRLIVPAGSVIVSLVDFLISFVILCCLMAWYRVIPDLKLLL
LPLFLAMAFLASFGAGLWLSALNVQYRDFRYVVPFLVQFGLYISPVGFSSSIVPEEWRFFYFLNPMVGVIDGFRWVLLGD
AFPVNWPGLCLSAALTLLMFAGGLWYFRNMERSFADVV

Sequences:

>Translated_278_residues
MAEMIGRDEIVIRPGMGALHYWRDIWRYRELFYFLAWRDILVRYKQTAIGIAWSVLRPLATMLVFTIVFGKLAKLPSNGV
PYPVMVFSAMLPWQFFANSLTESSNSLIDNANLLTKVYFPRLIVPAGSVIVSLVDFLISFVILCCLMAWYRVIPDLKLLL
LPLFLAMAFLASFGAGLWLSALNVQYRDFRYVVPFLVQFGLYISPVGFSSSIVPEEWRFFYFLNPMVGVIDGFRWVLLGD
AFPVNWPGLCLSAALTLLMFAGGLWYFRNMERSFADVV
>Mature_277_residues
AEMIGRDEIVIRPGMGALHYWRDIWRYRELFYFLAWRDILVRYKQTAIGIAWSVLRPLATMLVFTIVFGKLAKLPSNGVP
YPVMVFSAMLPWQFFANSLTESSNSLIDNANLLTKVYFPRLIVPAGSVIVSLVDFLISFVILCCLMAWYRVIPDLKLLLL
PLFLAMAFLASFGAGLWLSALNVQYRDFRYVVPFLVQFGLYISPVGFSSSIVPEEWRFFYFLNPMVGVIDGFRWVLLGDA
FPVNWPGLCLSAALTLLMFAGGLWYFRNMERSFADVV

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 31829; Mature: 31698

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEMIGRDEIVIRPGMGALHYWRDIWRYRELFYFLAWRDILVRYKQTAIGIAWSVLRPLA
CCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMLVFTIVFGKLAKLPSNGVPYPVMVFSAMLPWQFFANSLTESSNSLIDNANLLTKVYFP
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
RLIVPAGSVIVSLVDFLISFVILCCLMAWYRVIPDLKLLLLPLFLAMAFLASFGAGLWLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHH
ALNVQYRDFRYVVPFLVQFGLYISPVGFSSSIVPEEWRFFYFLNPMVGVIDGFRWVLLGD
HHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCC
AFPVNWPGLCLSAALTLLMFAGGLWYFRNMERSFADVV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AEMIGRDEIVIRPGMGALHYWRDIWRYRELFYFLAWRDILVRYKQTAIGIAWSVLRPLA
CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMLVFTIVFGKLAKLPSNGVPYPVMVFSAMLPWQFFANSLTESSNSLIDNANLLTKVYFP
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
RLIVPAGSVIVSLVDFLISFVILCCLMAWYRVIPDLKLLLLPLFLAMAFLASFGAGLWLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHH
ALNVQYRDFRYVVPFLVQFGLYISPVGFSSSIVPEEWRFFYFLNPMVGVIDGFRWVLLGD
HHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCC
AFPVNWPGLCLSAALTLLMFAGGLWYFRNMERSFADVV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]