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The map label for this gene is nifU [H]

Identifier: 118580364

GI number: 118580364

Start: 2097184

End: 2097585

Strand: Reverse

Name: nifU [H]

Synonym: Ppro_1947

Alternate gene names: 118580364

Gene position: 2097585-2097184 (Counterclockwise)

Preceding gene: 118580365

Following gene: 118580363

Centisome position: 52.33

GC content: 54.73

Gene sequence:

>402_bases
ATGAGTTTCGCGCATTACAGCCCCAAGGTATTCGATCATTTTCTGACCCCCCGCAACAACGGTGTTCTTGAGGACGCCAA
CGGCATAGGTGAAATCGGCGATCCGGAGTGCGGGGATCATCTGAAGGTGTACGTCAAAATAGAAGACGATATCGTCAAGG
ACATCAAGTTCCAGATCAAGGGGTGTCCGGCCGCCATCGCCTGCGCCAGCGCCATGACGGAACTGGTCATGGGCAAGCCG
GTGGGGGAGGCCATGCTGGTTTCCGATGATCAGATCATCGAATATATCGACGGGTTGCCGGAGTTCAAGGTCCACTGTTC
GGCCCTGGGAGCCTCGGGGTTCCGGGTGGCTGTCATGGATTACAGCATAAAATCGAAACTATTCGGAGCTACTGAAGGCT
AA

Upstream 100 bases:

>100_bases
GCACGATGTTGATGAAACCGTATCTGGAGTTCGTCAACCTGCCGCTGTGCCTGGACGCCTGAATAAGCAGGTGAATATTT
TACCATCAACGGAGGAGTAG

Downstream 100 bases:

>100_bases
GTTGTTAAAAAATAAACCATGTACATCAGGAGGAGTACCGTGAGCAGTACGTGTCAGGGAAATTCATCGCACCAGGGAGC
CTGCGGGCAGAGTACGGCTG

Product: NifU domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MSFAHYSPKVFDHFLTPRNNGVLEDANGIGEIGDPECGDHLKVYVKIEDDIVKDIKFQIKGCPAAIACASAMTELVMGKP
VGEAMLVSDDQIIEYIDGLPEFKVHCSALGASGFRVAVMDYSIKSKLFGATEG

Sequences:

>Translated_133_residues
MSFAHYSPKVFDHFLTPRNNGVLEDANGIGEIGDPECGDHLKVYVKIEDDIVKDIKFQIKGCPAAIACASAMTELVMGKP
VGEAMLVSDDQIIEYIDGLPEFKVHCSALGASGFRVAVMDYSIKSKLFGATEG
>Mature_132_residues
SFAHYSPKVFDHFLTPRNNGVLEDANGIGEIGDPECGDHLKVYVKIEDDIVKDIKFQIKGCPAAIACASAMTELVMGKPV
GEAMLVSDDQIIEYIDGLPEFKVHCSALGASGFRVAVMDYSIKSKLFGATEG

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=124, Percent_Identity=37.9032258064516, Blast_Score=86, Evalue=9e-18,
Organism=Homo sapiens, GI24307953, Length=124, Percent_Identity=37.0967741935484, Blast_Score=84, Evalue=5e-17,
Organism=Escherichia coli, GI1788878, Length=125, Percent_Identity=39.2, Blast_Score=95, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17543474, Length=127, Percent_Identity=37.007874015748, Blast_Score=86, Evalue=6e-18,
Organism=Saccharomyces cerevisiae, GI6324800, Length=124, Percent_Identity=40.3225806451613, Blast_Score=95, Evalue=4e-21,
Organism=Saccharomyces cerevisiae, GI6325122, Length=124, Percent_Identity=37.9032258064516, Blast_Score=91, Evalue=6e-20,
Organism=Drosophila melanogaster, GI21355597, Length=128, Percent_Identity=36.71875, Blast_Score=83, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 14357; Mature: 14225

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFAHYSPKVFDHFLTPRNNGVLEDANGIGEIGDPECGDHLKVYVKIEDDIVKDIKFQIK
CCCCCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHEEEC
GCPAAIACASAMTELVMGKPVGEAMLVSDDQIIEYIDGLPEFKVHCSALGASGFRVAVMD
CCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCCCCEEEEEEECCCCCEEEEEE
YSIKSKLFGATEG
CCHHHHCCCCCCC
>Mature Secondary Structure 
SFAHYSPKVFDHFLTPRNNGVLEDANGIGEIGDPECGDHLKVYVKIEDDIVKDIKFQIK
CCCCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHEEEC
GCPAAIACASAMTELVMGKPVGEAMLVSDDQIIEYIDGLPEFKVHCSALGASGFRVAVMD
CCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCCCCEEEEEEECCCCCEEEEEE
YSIKSKLFGATEG
CCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]