| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is xseA [H]
Identifier: 118580288
GI number: 118580288
Start: 2010729
End: 2012321
Strand: Reverse
Name: xseA [H]
Synonym: Ppro_1869
Alternate gene names: 118580288
Gene position: 2012321-2010729 (Counterclockwise)
Preceding gene: 118580289
Following gene: 118580287
Centisome position: 50.21
GC content: 48.65
Gene sequence:
>1593_bases ATGATGAGTGATGATGTAATCAAACGCTTCTTCCCCTTATCAAGTATCACCACTCGCATCAGTGAACTGCTGCAACCTGC CATAACCAAGCGGTTCTGGGTAAAGGCCGAAGTCATGTCCGGTCGGGAACGTGGAGGTGCATTCTACTGTGACCTGATTG AAACCGGTGCCAATGGCAAGATAGCAGCCAAAATATCCTGCACCATCTGGTCACAGGAACTGACCAGCATTCGCAATCTC TTCAAATCTAAAGGTATGGACTTGGTACTGACTGATGGGACGGTGGTCGGTTTCCAGTGTTCTCTGCAATACAGCCCGCA ATACGGCATCTCCCTTCGTGTAATTGACGCTGACCCCTCGTTCGCTTTGGGGGAAATGGAACTCAAAAAACGGGAAATCA TCGAACGACTTCAGAGAGAAGGACTGTTCCAACCGAACAAAGAGTGTTTTGTTCCGCTGTTACCGCAGAATATCGGTTTG ATTTCCAGTTTTGGCAGTGCCGCATACAACGACTTTATTCAGACCCTAACCACTTCTATGTTCGGCTTCAAAATCCATAT GGCTGATGCCATGATGCAAGGTGAACAGACTGAAAAATCCGTTCTTCGTGCTATGGATGCGCTCTGTAAGCTTGGTGTGG AATTGATTGTCATTGCGCGTGGCGGAGGCAGCAAGACAGACCTCTACTTCCTTGACAACGAAGCTGTCGCCCGCAAGATT GCCGCTTGCACAATCCCCGTCTGGACCGGCATCGGTCATGAAATCGACACCAGTGTGCTGGATTACGTAGCCAACAAATC ATTCAAGACGCCGACGGCAGTCGCGGAAGAGCTTGTTGCACGATTTATTCAGATGCAACGTCAACTGGAGGAAGCGTCGA ATACCCTACAAACGGTATGGGCATATCGCTTCAAAATAGACCGAGAGTATCTTGACAGAGCAATAATCGGCATTCATCAA GGACCAAGAAAGCTATTGGAAGTTACCGTCAGCAATTTGCGTGAACAGGCGCAGGATTTACGGCATCTGGTATCAGAGCG CCTATCAACCGAACATATCCAGCTTGAAAGTAAGCGGAGCCAGCTAAAATCATTACCGCTTGCTGTCATCCAAAAACAGA TAGAGCGCCTCTCTTCCAAGAAGCAGAATATCGGAACTCAGGTAAAGTTTGCTTTATCCGGTTGGACTGGCACAATGAGC CGATTGAAAGGCCGCTTCGACAAGAATCGTTATATCAAGCGACTACAGGTTGAAAGTGACGCACATGATAAGTCCAGTCA ACAACTGCTGAGCCGATTTACCGCAGCGGTAAAGCTTTTGACTATGCAGCAGTGGAATCGAAAAGAACGCTTCCGGGTAG AAAAAGTCAAGCAGCGCATCATGGTCGAGCGCAAGAGCCTGAATGACAAGATGGCAACTATTCGGGCAACTGACCCGCAG AATGCGCTGCAACGCGGGTTCGCGCTGGTATACCGGCAGGATGGTCAGCTTATCCGGTCAATACACGATATAAATAAATC TGATACCATACGGACACATGTAGTTGACGGCACTGTAATCAGCGAAGTGGTCGCCAAGGAGGCAAAAGCATGA
Upstream 100 bases:
>100_bases TGAAAACCATCATTGACCAGACCATATCTGAACTTGAAAAATGTGACCTACCGGAAAAAGTGGAATTAACTAAGTCAGAA ACAGTAGCCAACCCTTTTGA
Downstream 100 bases:
>100_bases GTGAAGCAACTGATGAACTCTCTTATGAGCAGAAAGTAGCTAGGTTGGATGAAATACTGACCCGACTCGACAATTCGGAA ACACCTATCGACGAACTAGC
Product: exodeoxyribonuclease VII
Products: NA
Alternate protein names: Exodeoxyribonuclease VII large subunit; Exonuclease VII large subunit [H]
Number of amino acids: Translated: 530; Mature: 530
Protein sequence:
>530_residues MMSDDVIKRFFPLSSITTRISELLQPAITKRFWVKAEVMSGRERGGAFYCDLIETGANGKIAAKISCTIWSQELTSIRNL FKSKGMDLVLTDGTVVGFQCSLQYSPQYGISLRVIDADPSFALGEMELKKREIIERLQREGLFQPNKECFVPLLPQNIGL ISSFGSAAYNDFIQTLTTSMFGFKIHMADAMMQGEQTEKSVLRAMDALCKLGVELIVIARGGGSKTDLYFLDNEAVARKI AACTIPVWTGIGHEIDTSVLDYVANKSFKTPTAVAEELVARFIQMQRQLEEASNTLQTVWAYRFKIDREYLDRAIIGIHQ GPRKLLEVTVSNLREQAQDLRHLVSERLSTEHIQLESKRSQLKSLPLAVIQKQIERLSSKKQNIGTQVKFALSGWTGTMS RLKGRFDKNRYIKRLQVESDAHDKSSQQLLSRFTAAVKLLTMQQWNRKERFRVEKVKQRIMVERKSLNDKMATIRATDPQ NALQRGFALVYRQDGQLIRSIHDINKSDTIRTHVVDGTVISEVVAKEAKA
Sequences:
>Translated_530_residues MMSDDVIKRFFPLSSITTRISELLQPAITKRFWVKAEVMSGRERGGAFYCDLIETGANGKIAAKISCTIWSQELTSIRNL FKSKGMDLVLTDGTVVGFQCSLQYSPQYGISLRVIDADPSFALGEMELKKREIIERLQREGLFQPNKECFVPLLPQNIGL ISSFGSAAYNDFIQTLTTSMFGFKIHMADAMMQGEQTEKSVLRAMDALCKLGVELIVIARGGGSKTDLYFLDNEAVARKI AACTIPVWTGIGHEIDTSVLDYVANKSFKTPTAVAEELVARFIQMQRQLEEASNTLQTVWAYRFKIDREYLDRAIIGIHQ GPRKLLEVTVSNLREQAQDLRHLVSERLSTEHIQLESKRSQLKSLPLAVIQKQIERLSSKKQNIGTQVKFALSGWTGTMS RLKGRFDKNRYIKRLQVESDAHDKSSQQLLSRFTAAVKLLTMQQWNRKERFRVEKVKQRIMVERKSLNDKMATIRATDPQ NALQRGFALVYRQDGQLIRSIHDINKSDTIRTHVVDGTVISEVVAKEAKA >Mature_530_residues MMSDDVIKRFFPLSSITTRISELLQPAITKRFWVKAEVMSGRERGGAFYCDLIETGANGKIAAKISCTIWSQELTSIRNL FKSKGMDLVLTDGTVVGFQCSLQYSPQYGISLRVIDADPSFALGEMELKKREIIERLQREGLFQPNKECFVPLLPQNIGL ISSFGSAAYNDFIQTLTTSMFGFKIHMADAMMQGEQTEKSVLRAMDALCKLGVELIVIARGGGSKTDLYFLDNEAVARKI AACTIPVWTGIGHEIDTSVLDYVANKSFKTPTAVAEELVARFIQMQRQLEEASNTLQTVWAYRFKIDREYLDRAIIGIHQ GPRKLLEVTVSNLREQAQDLRHLVSERLSTEHIQLESKRSQLKSLPLAVIQKQIERLSSKKQNIGTQVKFALSGWTGTMS RLKGRFDKNRYIKRLQVESDAHDKSSQQLLSRFTAAVKLLTMQQWNRKERFRVEKVKQRIMVERKSLNDKMATIRATDPQ NALQRGFALVYRQDGQLIRSIHDINKSDTIRTHVVDGTVISEVVAKEAKA
Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]
COG id: COG1570
COG function: function code L; Exonuclease VII, large subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xseA family [H]
Homologues:
Organism=Escherichia coli, GI1788856, Length=295, Percent_Identity=24.406779661017, Blast_Score=92, Evalue=6e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003753 - InterPro: IPR020579 - InterPro: IPR004365 [H]
Pfam domain/function: PF02601 Exonuc_VII_L; PF01336 tRNA_anti [H]
EC number: =3.1.11.6 [H]
Molecular weight: Translated: 60008; Mature: 60008
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSDDVIKRFFPLSSITTRISELLQPAITKRFWVKAEVMSGRERGGAFYCDLIETGANGK CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCE IAAKISCTIWSQELTSIRNLFKSKGMDLVLTDGTVVGFQCSLQYSPQYGISLRVIDADPS EEEEEEEEEHHHHHHHHHHHHHHCCCEEEEECCEEEEEEEEEEECCCCCCEEEEEECCCC FALGEMELKKREIIERLQREGLFQPNKECFVPLLPQNIGLISSFGSAAYNDFIQTLTTSM CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHH FGFKIHMADAMMQGEQTEKSVLRAMDALCKLGVELIVIARGGGSKTDLYFLDNEAVARKI HHEEEEHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHH AACTIPVWTGIGHEIDTSVLDYVANKSFKTPTAVAEELVARFIQMQRQLEEASNTLQTVW HHHEEHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AYRFKIDREYLDRAIIGIHQGPRKLLEVTVSNLREQAQDLRHLVSERLSTEHIQLESKRS HHHHEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH QLKSLPLAVIQKQIERLSSKKQNIGTQVKFALSGWTGTMSRLKGRFDKNRYIKRLQVESD HHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCCHHHHHHHHCCCCC AHDKSSQQLLSRFTAAVKLLTMQQWNRKERFRVEKVKQRIMVERKSLNDKMATIRATDPQ CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCHH NALQRGFALVYRQDGQLIRSIHDINKSDTIRTHVVDGTVISEVVAKEAKA HHHHHHHEEEEECCCHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHCCC >Mature Secondary Structure MMSDDVIKRFFPLSSITTRISELLQPAITKRFWVKAEVMSGRERGGAFYCDLIETGANGK CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCE IAAKISCTIWSQELTSIRNLFKSKGMDLVLTDGTVVGFQCSLQYSPQYGISLRVIDADPS EEEEEEEEEHHHHHHHHHHHHHHCCCEEEEECCEEEEEEEEEEECCCCCCEEEEEECCCC FALGEMELKKREIIERLQREGLFQPNKECFVPLLPQNIGLISSFGSAAYNDFIQTLTTSM CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHH FGFKIHMADAMMQGEQTEKSVLRAMDALCKLGVELIVIARGGGSKTDLYFLDNEAVARKI HHEEEEHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHH AACTIPVWTGIGHEIDTSVLDYVANKSFKTPTAVAEELVARFIQMQRQLEEASNTLQTVW HHHEEHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AYRFKIDREYLDRAIIGIHQGPRKLLEVTVSNLREQAQDLRHLVSERLSTEHIQLESKRS HHHHEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH QLKSLPLAVIQKQIERLSSKKQNIGTQVKFALSGWTGTMSRLKGRFDKNRYIKRLQVESD HHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCCHHHHHHHHCCCCC AHDKSSQQLLSRFTAAVKLLTMQQWNRKERFRVEKVKQRIMVERKSLNDKMATIRATDPQ CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCHH NALQRGFALVYRQDGQLIRSIHDINKSDTIRTHVVDGTVISEVVAKEAKA HHHHHHHEEEEECCCHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]