| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
Click here to switch to the map view.
The map label for this gene is yoaA [C]
Identifier: 118580267
GI number: 118580267
Start: 1985878
End: 1988301
Strand: Reverse
Name: yoaA [C]
Synonym: Ppro_1847
Alternate gene names: 118580267
Gene position: 1988301-1985878 (Counterclockwise)
Preceding gene: 118580268
Following gene: 118580265
Centisome position: 49.61
GC content: 63.86
Gene sequence:
>2424_bases ATGAAACAGATCACCCTGGCACTACGGGATTTCGCCCTGCCGTCGCCTCCCCGTGGCAGCATCGAGGCGTACTCCGGCTC CGGCCGCGCAGCCGCCCAGGGGCGGGAGATCCACGCTCGCGTTCAGAAGAGGCGCAAGAGTGATCCCTCCTACCAGGCCG AGGTGTCGGTCAACTGTCTGCTGGAGCGGGAGGGGTACGGCTTCCGTATCGATGGCCGCATGGACGGAATCTTCCGCACC GATCCGCCGCTGATCGAAGAGATCAAGTCCTCTTTCAACATCCGCGAACTCTCCCGCCGGCTGGTCGACAATCCCCTGGA GCATCCCTACTCCCTGCAGCTCTTCAGCTACGGCTACTTTCACTGGCGCGAACAGGGGGCAATCCCCCGGCTCCGTCTCC TCCTCGTCTCCACCCGTGGCAGGGAGAGTAGGGAGCTGGAGCTTGACCTGGACATCCCCCGCTTTGAGCAATGGCTGGAA TCCCGCCTCAAGGAGCTGGTCAGCGAGGCCAGGCTGGCCGAGAAGCGGGCCGCCCGGCGACGGAAGGAATCCGCATCGTT TCCCTTTCCCTTCGCCACCCCTCGCTCCGGCCAGGTCGACCTGATGCGGACGATCCAGGAGGGGATGGGGGAGGGGAGGG CGATGCTGCTCCAGGCAGCCACGGGGCTGGGGAAGACCGTGGGCGTGCTCTTCCCGGTGCTGAAAGAGGCGTTCTCCCGT GGCCAGAGGGTGGTGTACGTTACCCCCAAGAACAGTCAGCACGCCGTGGCCGAGGACGCGGTCGACCGTTTTCAGCAGGC GGGCTCGAAGATCAGGTCCCTGACCATCACCGCCAAGGGGAAGATCTGCTTCAAGGACGAGCCGCTCTGCGATCCCGGTT ACTGCGAGTATGCCCGGGATTACTACGAAAAACTCCACGAAAACGATATCCTGGCCATCCTGGCTCGCAAGCGGCGCCTG AAAAGCCGCACGTTCCGCCAGCTGGGTGAACAGTACCAGGTCTGTCCCTTCGAGCTGCAGCTGGACGCCAGCCGGGAGGC GGACCTGGTGATCTGCGACTACAACTATGTCTTTGCCCCCCGCTCCGCACTGGGCCGTATGACCGACATGTCCATCGACC AGGAGGGGAAGCCGAGCCTGGTGATCGACGAAGCCCACAACCTCCCCGGACGGGCCATGGAGTATTATTCGCCTGTGCTC TCGTCCCAGCACCTGGAGATGTTGCGCCATGCCATGGGAGACATTCATCCCCCCTTCAACAAGGAGGCCCAGCAACTCCT GGACGACTGCCTGGCCACCCTGACATCCTGCGGCGGTGCCGGCGGCTCCCGTCCGCTGCGCATCACCCCGCCTTTGGAGC CTTTCCTGGAGCAGGACGAGCGGCTGCGCGCCCTGCTCAACCGCTATCTGGATTCCGGTGCAGAGATGGGACGTCAGGAT CCGATCCTGGGCCTCTGTTTCTCCTGGTCGGAGTTCACCCGCTTGCTGGAATACGCCGCCGATCCCGAACGCCAGGAGTT CTTCACCACCTGGCACCCCCATGGGTCCGGGGGCGCGGTAAAGATCACCTGCTGCGACGCCTCGGAAATGCTGAAGGAGT GCTACGCCGACTACGGCCAGGTGGTGGCCTTCTCGGCAACGCTCAAACCCTTCGACTACTACGCCAGGCTCTCGGGCCTT GATCCCGAATCGGTCAGGACGGCGGAATTTCCCTCCCCCTTTCCCCCCGAACTGCGCAAGCTGCTGCTCATCCCCCAGGT CTCCACCCGCTATTCCCGGCGCGAGGCCAATTATGGCAAGATCGCCGATGCGGTCAGGCGGATCGCAGGGGGGCGTCGCG GTAACTACCTGGTGTTTCTGCCCAGCTTTCCCTTCCTGGAGCGGGTGCTTGAGCTGTTCCGTCCGCCCGAGGGGTTCGTG GTGCTGCGTCAGGAGCGCGACATGAAGGCCAGACAGGTGGAGGAGGTCCTGGAACGGTTGCGTGCTGGGAACAGTCCTAC CATCCTGTTCGCGGTGCAGGGCGGGTCGTTTTCCGAGGGGGTTGACTATGCCGGTGAGATGGTCATCGGCGCCTTCGTGG TCGGGCCGCCGCTGCCGAACTATGATTTTCAGCGGGAACAGATGAGGGAGTACTACCAGAAAAGGTACGGGGCAGGCTTC CCGTACGCCTACACCATACCGGCCATGGCCAGGGCAGTGCAGGCGGCCGGCAGGGTGATCCGCTCCGAGACAGACCGGGG ACTGATCGTGCTGATGGACGACCGCTTCATGGATCCGGAGTATTCAAGCGCCATGCCGGCGGATTGGTTCGAGTCCGATG TGCGGGAGCTGGTGTCCGGCAGCATCCTCAAGGATGTGGAGGAATTCTGGGCGGGGACGGAATCGCGCCGGCGCCACCAG GAAGTGACTGGGGAAGCCGGATAG
Upstream 100 bases:
>100_bases ACCATGGGCAGGACATCAATTTTCTGAGCCGTCCGTTTGAACAGGGTATCCCCATGCACCGACATACACCTCTTTTCTGG ATCGTGGCGCGACAGCCACG
Downstream 100 bases:
>100_bases GCACGAGACTGTGCGGGTTCTGTTCCGAAGAACAAACAAAGTGCCCGTAGCAGCACTGTAGAGTGAAGCAGTGGGAGAGG GTAGCGAAACCAGCAACGAT
Product: DEAD_2 domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 807; Mature: 807
Protein sequence:
>807_residues MKQITLALRDFALPSPPRGSIEAYSGSGRAAAQGREIHARVQKRRKSDPSYQAEVSVNCLLEREGYGFRIDGRMDGIFRT DPPLIEEIKSSFNIRELSRRLVDNPLEHPYSLQLFSYGYFHWREQGAIPRLRLLLVSTRGRESRELELDLDIPRFEQWLE SRLKELVSEARLAEKRAARRRKESASFPFPFATPRSGQVDLMRTIQEGMGEGRAMLLQAATGLGKTVGVLFPVLKEAFSR GQRVVYVTPKNSQHAVAEDAVDRFQQAGSKIRSLTITAKGKICFKDEPLCDPGYCEYARDYYEKLHENDILAILARKRRL KSRTFRQLGEQYQVCPFELQLDASREADLVICDYNYVFAPRSALGRMTDMSIDQEGKPSLVIDEAHNLPGRAMEYYSPVL SSQHLEMLRHAMGDIHPPFNKEAQQLLDDCLATLTSCGGAGGSRPLRITPPLEPFLEQDERLRALLNRYLDSGAEMGRQD PILGLCFSWSEFTRLLEYAADPERQEFFTTWHPHGSGGAVKITCCDASEMLKECYADYGQVVAFSATLKPFDYYARLSGL DPESVRTAEFPSPFPPELRKLLLIPQVSTRYSRREANYGKIADAVRRIAGGRRGNYLVFLPSFPFLERVLELFRPPEGFV VLRQERDMKARQVEEVLERLRAGNSPTILFAVQGGSFSEGVDYAGEMVIGAFVVGPPLPNYDFQREQMREYYQKRYGAGF PYAYTIPAMARAVQAAGRVIRSETDRGLIVLMDDRFMDPEYSSAMPADWFESDVRELVSGSILKDVEEFWAGTESRRRHQ EVTGEAG
Sequences:
>Translated_807_residues MKQITLALRDFALPSPPRGSIEAYSGSGRAAAQGREIHARVQKRRKSDPSYQAEVSVNCLLEREGYGFRIDGRMDGIFRT DPPLIEEIKSSFNIRELSRRLVDNPLEHPYSLQLFSYGYFHWREQGAIPRLRLLLVSTRGRESRELELDLDIPRFEQWLE SRLKELVSEARLAEKRAARRRKESASFPFPFATPRSGQVDLMRTIQEGMGEGRAMLLQAATGLGKTVGVLFPVLKEAFSR GQRVVYVTPKNSQHAVAEDAVDRFQQAGSKIRSLTITAKGKICFKDEPLCDPGYCEYARDYYEKLHENDILAILARKRRL KSRTFRQLGEQYQVCPFELQLDASREADLVICDYNYVFAPRSALGRMTDMSIDQEGKPSLVIDEAHNLPGRAMEYYSPVL SSQHLEMLRHAMGDIHPPFNKEAQQLLDDCLATLTSCGGAGGSRPLRITPPLEPFLEQDERLRALLNRYLDSGAEMGRQD PILGLCFSWSEFTRLLEYAADPERQEFFTTWHPHGSGGAVKITCCDASEMLKECYADYGQVVAFSATLKPFDYYARLSGL DPESVRTAEFPSPFPPELRKLLLIPQVSTRYSRREANYGKIADAVRRIAGGRRGNYLVFLPSFPFLERVLELFRPPEGFV VLRQERDMKARQVEEVLERLRAGNSPTILFAVQGGSFSEGVDYAGEMVIGAFVVGPPLPNYDFQREQMREYYQKRYGAGF PYAYTIPAMARAVQAAGRVIRSETDRGLIVLMDDRFMDPEYSSAMPADWFESDVRELVSGSILKDVEEFWAGTESRRRHQ EVTGEAG >Mature_807_residues MKQITLALRDFALPSPPRGSIEAYSGSGRAAAQGREIHARVQKRRKSDPSYQAEVSVNCLLEREGYGFRIDGRMDGIFRT DPPLIEEIKSSFNIRELSRRLVDNPLEHPYSLQLFSYGYFHWREQGAIPRLRLLLVSTRGRESRELELDLDIPRFEQWLE SRLKELVSEARLAEKRAARRRKESASFPFPFATPRSGQVDLMRTIQEGMGEGRAMLLQAATGLGKTVGVLFPVLKEAFSR GQRVVYVTPKNSQHAVAEDAVDRFQQAGSKIRSLTITAKGKICFKDEPLCDPGYCEYARDYYEKLHENDILAILARKRRL KSRTFRQLGEQYQVCPFELQLDASREADLVICDYNYVFAPRSALGRMTDMSIDQEGKPSLVIDEAHNLPGRAMEYYSPVL SSQHLEMLRHAMGDIHPPFNKEAQQLLDDCLATLTSCGGAGGSRPLRITPPLEPFLEQDERLRALLNRYLDSGAEMGRQD PILGLCFSWSEFTRLLEYAADPERQEFFTTWHPHGSGGAVKITCCDASEMLKECYADYGQVVAFSATLKPFDYYARLSGL DPESVRTAEFPSPFPPELRKLLLIPQVSTRYSRREANYGKIADAVRRIAGGRRGNYLVFLPSFPFLERVLELFRPPEGFV VLRQERDMKARQVEEVLERLRAGNSPTILFAVQGGSFSEGVDYAGEMVIGAFVVGPPLPNYDFQREQMREYYQKRYGAGF PYAYTIPAMARAVQAAGRVIRSETDRGLIVLMDDRFMDPEYSSAMPADWFESDVRELVSGSILKDVEEFWAGTESRRRHQ EVTGEAG
Specific function: Unknown
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1788110, Length=627, Percent_Identity=22.488038277512, Blast_Score=72, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71994598, Length=280, Percent_Identity=24.2857142857143, Blast_Score=72, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6321019, Length=262, Percent_Identity=26.7175572519084, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010614 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 [H]
Pfam domain/function: PF06733 DEAD_2 [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 91601; Mature: 91601
Theoretical pI: Translated: 6.93; Mature: 6.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQITLALRDFALPSPPRGSIEAYSGSGRAAAQGREIHARVQKRRKSDPSYQAEVSVNCL CCCEEEEHHHHCCCCCCCCCCEEECCCCCCHHCCHHHHHHHHHHHCCCCCCEEEEEEEEE LEREGYGFRIDGRMDGIFRTDPPLIEEIKSSFNIRELSRRLVDNPLEHPYSLQLFSYGYF EEECCCCEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEEECCCC HWREQGAIPRLRLLLVSTRGRESRELELDLDIPRFEQWLESRLKELVSEARLAEKRAARR EECCCCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RKESASFPFPFATPRSGQVDLMRTIQEGMGEGRAMLLQAATGLGKTVGVLFPVLKEAFSR HHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHC GQRVVYVTPKNSQHAVAEDAVDRFQQAGSKIRSLTITAKGKICFKDEPLCDPGYCEYARD CCEEEEECCCCCCCHHHHHHHHHHHHHCHHHEEEEEEECCEEEECCCCCCCCCHHHHHHH YYEKLHENDILAILARKRRLKSRTFRQLGEQYQVCPFELQLDASREADLVICDYNYVFAP HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEECCCEEECC RSALGRMTDMSIDQEGKPSLVIDEAHNLPGRAMEYYSPVLSSQHLEMLRHAMGDIHPPFN HHHHCCHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC KEAQQLLDDCLATLTSCGGAGGSRPLRITPPLEPFLEQDERLRALLNRYLDSGAEMGRQD HHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCC PILGLCFSWSEFTRLLEYAADPERQEFFTTWHPHGSGGAVKITCCDASEMLKECYADYGQ CCEEEEECHHHHHHHHHHHCCCCHHHHEEEECCCCCCCEEEEEECCHHHHHHHHHHCCCC VVAFSATLKPFDYYARLSGLDPESVRTAEFPSPFPPELRKLLLIPQVSTRYSRREANYGK EEEEEECCCCHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHEECCCCHHHHHHHHCCCHHH IADAVRRIAGGRRGNYLVFLPSFPFLERVLELFRPPEGFVVLRQERDMKARQVEEVLERL HHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHH RAGNSPTILFAVQGGSFSEGVDYAGEMVIGAFVVGPPLPNYDFQREQMREYYQKRYGAGF HCCCCCEEEEEECCCCCCCCHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC PYAYTIPAMARAVQAAGRVIRSETDRGLIVLMDDRFMDPEYSSAMPADWFESDVRELVSG CCEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCC SILKDVEEFWAGTESRRRHQEVTGEAG HHHHHHHHHHCCCHHHHHHHHHCCCCC >Mature Secondary Structure MKQITLALRDFALPSPPRGSIEAYSGSGRAAAQGREIHARVQKRRKSDPSYQAEVSVNCL CCCEEEEHHHHCCCCCCCCCCEEECCCCCCHHCCHHHHHHHHHHHCCCCCCEEEEEEEEE LEREGYGFRIDGRMDGIFRTDPPLIEEIKSSFNIRELSRRLVDNPLEHPYSLQLFSYGYF EEECCCCEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEEECCCC HWREQGAIPRLRLLLVSTRGRESRELELDLDIPRFEQWLESRLKELVSEARLAEKRAARR EECCCCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RKESASFPFPFATPRSGQVDLMRTIQEGMGEGRAMLLQAATGLGKTVGVLFPVLKEAFSR HHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHC GQRVVYVTPKNSQHAVAEDAVDRFQQAGSKIRSLTITAKGKICFKDEPLCDPGYCEYARD CCEEEEECCCCCCCHHHHHHHHHHHHHCHHHEEEEEEECCEEEECCCCCCCCCHHHHHHH YYEKLHENDILAILARKRRLKSRTFRQLGEQYQVCPFELQLDASREADLVICDYNYVFAP HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEECCCEEECC RSALGRMTDMSIDQEGKPSLVIDEAHNLPGRAMEYYSPVLSSQHLEMLRHAMGDIHPPFN HHHHCCHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC KEAQQLLDDCLATLTSCGGAGGSRPLRITPPLEPFLEQDERLRALLNRYLDSGAEMGRQD HHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCC PILGLCFSWSEFTRLLEYAADPERQEFFTTWHPHGSGGAVKITCCDASEMLKECYADYGQ CCEEEEECHHHHHHHHHHHCCCCHHHHEEEECCCCCCCEEEEEECCHHHHHHHHHHCCCC VVAFSATLKPFDYYARLSGLDPESVRTAEFPSPFPPELRKLLLIPQVSTRYSRREANYGK EEEEEECCCCHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHEECCCCHHHHHHHHCCCHHH IADAVRRIAGGRRGNYLVFLPSFPFLERVLELFRPPEGFVVLRQERDMKARQVEEVLERL HHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHH RAGNSPTILFAVQGGSFSEGVDYAGEMVIGAFVVGPPLPNYDFQREQMREYYQKRYGAGF HCCCCCEEEEEECCCCCCCCHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC PYAYTIPAMARAVQAAGRVIRSETDRGLIVLMDDRFMDPEYSSAMPADWFESDVRELVSG CCEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCC SILKDVEEFWAGTESRRRHQEVTGEAG HHHHHHHHHHCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11029001 [H]