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The map label for this gene is secD [H]

Identifier: 118580218

GI number: 118580218

Start: 1924107

End: 1925699

Strand: Reverse

Name: secD [H]

Synonym: Ppro_1798

Alternate gene names: 118580218

Gene position: 1925699-1924107 (Counterclockwise)

Preceding gene: 118580219

Following gene: 118580217

Centisome position: 48.05

GC content: 61.71

Gene sequence:

>1593_bases
ATGCCTAAAGAAACCGGCTGGCGCATAAGCCTGATAGTTATCTTCGCCCTGGTATCGCTTCTCTACCTGACTCCAACGCT
GGTGACGCAACTCCCCTCCTGGTGGACCGGGCTGCTTCCCAAGGACAAGATCCATCTGGGGCTCGACCTGCAGGGGGGGA
CTCACCTGGTGCTGGAGGTGGATACCCAGAAGGCGGTGGAGGGGTCGCTGGATATCGTAGCCACCGACCTGGAAGATACC
CTGAACAACAAGAACCTGCACTTCAAGCGCATCAGCCGCACCGATTGGAATAGGGTGACCCTGCTCCTGTACGAGAAGGA
TACCGCCGCAGCGGTGCAGAAGATGCTCAAGGACAAGTATCCCGGCTACCAGCAGAGCCCGCTGTACGATGACGGCGGTT
TCGTGGCTTTAAACCTGAGCATCACCGACGAGGCGGCCAAGGATCGCAAGGACAAGGCGGTGGCCCAGGCCCTGGAGACC
ATCCGCAACAGGATCGACCAGTTCGGCGTCTCCGAGCCGGTCATCCAGCGCGAGGGGGTCGATCACATCGTGGTGCAGCT
CCCCGGCATCAAGGACCCCCAGCGGGCCATCGACCTGATCGGCAAGACCGCCCGTCTGGAGTTCAAGCTGGTGCGGGAGG
ACATCCCGCCGGGCTCCATCTCCCTGCCCGATGACGCCGAAATCATGAAGGAAAAAGAGGTTGATCCGGATACCGGCGCC
GTAAGCGAAGTACCCTATGTGCTGCAGAAGAAGGCGATGATCACCGGCGACCTGCTCACCGATGCCCAGGTGCGCATCGA
CTCCCAGTTCAACCAGCCCTACGTGGCCATCGAGTTCAACTCCCTGGGGTCCAAGCTGTTCGACCAGGTCACCGCCGCCA
ACGTGGGCAAGCGCTTCGCCATCGTACTGGACAACAACGTCTACTCGGCCCCGGTGATCCGCGAACGCATCTCCGGCGGC
AGCGCCCAGATCTCGGGCAACTTCACCGAGAAGACCGCCGCCGACCTGGCCATCGTGCTCAGGGCCGGCGCCCTGCCTGC
ACCGGTGAAGATCATCCAGAACGAGACCGTCGGACCCTCCCTGGGGCAGGACTCCATCACCAAGGGGCTGATGGCCGGCC
TGATCGGAATTCTGGTGGTGGTGGTCTTCATGGGGCTGTACTACAAGCTGTCCGGCATGGTGGCAAACCTGGGCATGGTG
ATGAACGTGCTCTACCTGATGGGCGCCCTGGCGGCCCTGGGCGCCACACTGACCCTGCCCGGCATCGCCGCCATTGTGCT
CCTGATCGGCATGTCGGTGGACGCCAACGTGATCATCTTCGAGCGCATCCGCGAGGAGCTCAGGCTGGGCAAGTCGCCCA
AATCGGCCCTGGACGCCGGCTATGACAAGGCCTTCCTGACCATCATGGACTCCCACGTCACCACCCTGATCACCGCGGCG
GTACTGTTCCAGTTCGGCACCGGTCCGGTGAAGGGCTTCGCGGTTTCCTTAAGCCTGGGGGTCATCATCAACCTGTTCAC
CTCGCTGATCGGCACCAAGGTGATCTTCGACCTGTTCCTGTACAGGGGAACCGTCAAGAAAATGAGCATATAG

Upstream 100 bases:

>100_bases
GCCGCAATCAACAACAAGTAAAATCCCGTGACAGGAAGCGGAAGAAGATATCCCCCGATACCCTCGACCCGACCGCACAA
CCGAAGGGAGACCGAGCTTC

Downstream 100 bases:

>100_bases
GGGGAACGGCGAGCATGGAATTTCTGGGCAAGACCAACATAGACTTCATGGGCAAAAAGAAGCTCTCTTTTGCCATTTCG
ATCATCATCTCCCTGGTCGG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 529

Protein sequence:

>530_residues
MPKETGWRISLIVIFALVSLLYLTPTLVTQLPSWWTGLLPKDKIHLGLDLQGGTHLVLEVDTQKAVEGSLDIVATDLEDT
LNNKNLHFKRISRTDWNRVTLLLYEKDTAAAVQKMLKDKYPGYQQSPLYDDGGFVALNLSITDEAAKDRKDKAVAQALET
IRNRIDQFGVSEPVIQREGVDHIVVQLPGIKDPQRAIDLIGKTARLEFKLVREDIPPGSISLPDDAEIMKEKEVDPDTGA
VSEVPYVLQKKAMITGDLLTDAQVRIDSQFNQPYVAIEFNSLGSKLFDQVTAANVGKRFAIVLDNNVYSAPVIRERISGG
SAQISGNFTEKTAADLAIVLRAGALPAPVKIIQNETVGPSLGQDSITKGLMAGLIGILVVVVFMGLYYKLSGMVANLGMV
MNVLYLMGALAALGATLTLPGIAAIVLLIGMSVDANVIIFERIREELRLGKSPKSALDAGYDKAFLTIMDSHVTTLITAA
VLFQFGTGPVKGFAVSLSLGVIINLFTSLIGTKVIFDLFLYRGTVKKMSI

Sequences:

>Translated_530_residues
MPKETGWRISLIVIFALVSLLYLTPTLVTQLPSWWTGLLPKDKIHLGLDLQGGTHLVLEVDTQKAVEGSLDIVATDLEDT
LNNKNLHFKRISRTDWNRVTLLLYEKDTAAAVQKMLKDKYPGYQQSPLYDDGGFVALNLSITDEAAKDRKDKAVAQALET
IRNRIDQFGVSEPVIQREGVDHIVVQLPGIKDPQRAIDLIGKTARLEFKLVREDIPPGSISLPDDAEIMKEKEVDPDTGA
VSEVPYVLQKKAMITGDLLTDAQVRIDSQFNQPYVAIEFNSLGSKLFDQVTAANVGKRFAIVLDNNVYSAPVIRERISGG
SAQISGNFTEKTAADLAIVLRAGALPAPVKIIQNETVGPSLGQDSITKGLMAGLIGILVVVVFMGLYYKLSGMVANLGMV
MNVLYLMGALAALGATLTLPGIAAIVLLIGMSVDANVIIFERIREELRLGKSPKSALDAGYDKAFLTIMDSHVTTLITAA
VLFQFGTGPVKGFAVSLSLGVIINLFTSLIGTKVIFDLFLYRGTVKKMSI
>Mature_529_residues
PKETGWRISLIVIFALVSLLYLTPTLVTQLPSWWTGLLPKDKIHLGLDLQGGTHLVLEVDTQKAVEGSLDIVATDLEDTL
NNKNLHFKRISRTDWNRVTLLLYEKDTAAAVQKMLKDKYPGYQQSPLYDDGGFVALNLSITDEAAKDRKDKAVAQALETI
RNRIDQFGVSEPVIQREGVDHIVVQLPGIKDPQRAIDLIGKTARLEFKLVREDIPPGSISLPDDAEIMKEKEVDPDTGAV
SEVPYVLQKKAMITGDLLTDAQVRIDSQFNQPYVAIEFNSLGSKLFDQVTAANVGKRFAIVLDNNVYSAPVIRERISGGS
AQISGNFTEKTAADLAIVLRAGALPAPVKIIQNETVGPSLGQDSITKGLMAGLIGILVVVVFMGLYYKLSGMVANLGMVM
NVLYLMGALAALGATLTLPGIAAIVLLIGMSVDANVIIFERIREELRLGKSPKSALDAGYDKAFLTIMDSHVTTLITAAV
LFQFGTGPVKGFAVSLSLGVIINLFTSLIGTKVIFDLFLYRGTVKKMSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=523, Percent_Identity=34.7992351816444, Blast_Score=313, Evalue=2e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 57596; Mature: 57465

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKETGWRISLIVIFALVSLLYLTPTLVTQLPSWWTGLLPKDKIHLGLDLQGGTHLVLEV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEEEECCCEEEEEEE
DTQKAVEGSLDIVATDLEDTLNNKNLHFKRISRTDWNRVTLLLYEKDTAAAVQKMLKDKY
CCHHHHCCCCEEEEECHHHHCCCCCEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHCC
PGYQQSPLYDDGGFVALNLSITDEAAKDRKDKAVAQALETIRNRIDQFGVSEPVIQREGV
CCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC
DHIVVQLPGIKDPQRAIDLIGKTARLEFKLVREDIPPGSISLPDDAEIMKEKEVDPDTGA
CEEEEECCCCCCHHHHHHHHCCHHHEEEEEEHHCCCCCCCCCCCCHHHHHHCCCCCCCCC
VSEVPYVLQKKAMITGDLLTDAQVRIDSQFNQPYVAIEFNSLGSKLFDQVTAANVGKRFA
HHHCCHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEE
IVLDNNVYSAPVIRERISGGSAQISGNFTEKTAADLAIVLRAGALPAPVKIIQNETVGPS
EEEECCCCCCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHEECCCCCCCC
LGQDSITKGLMAGLIGILVVVVFMGLYYKLSGMVANLGMVMNVLYLMGALAALGATLTLP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
GIAAIVLLIGMSVDANVIIFERIREELRLGKSPKSALDAGYDKAFLTIMDSHVTTLITAA
HHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHH
VLFQFGTGPVKGFAVSLSLGVIINLFTSLIGTKVIFDLFLYRGTVKKMSI
HHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure 
PKETGWRISLIVIFALVSLLYLTPTLVTQLPSWWTGLLPKDKIHLGLDLQGGTHLVLEV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEEEECCCEEEEEEE
DTQKAVEGSLDIVATDLEDTLNNKNLHFKRISRTDWNRVTLLLYEKDTAAAVQKMLKDKY
CCHHHHCCCCEEEEECHHHHCCCCCEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHCC
PGYQQSPLYDDGGFVALNLSITDEAAKDRKDKAVAQALETIRNRIDQFGVSEPVIQREGV
CCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC
DHIVVQLPGIKDPQRAIDLIGKTARLEFKLVREDIPPGSISLPDDAEIMKEKEVDPDTGA
CEEEEECCCCCCHHHHHHHHCCHHHEEEEEEHHCCCCCCCCCCCCHHHHHHCCCCCCCCC
VSEVPYVLQKKAMITGDLLTDAQVRIDSQFNQPYVAIEFNSLGSKLFDQVTAANVGKRFA
HHHCCHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEE
IVLDNNVYSAPVIRERISGGSAQISGNFTEKTAADLAIVLRAGALPAPVKIIQNETVGPS
EEEECCCCCCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHEECCCCCCCC
LGQDSITKGLMAGLIGILVVVVFMGLYYKLSGMVANLGMVMNVLYLMGALAALGATLTLP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
GIAAIVLLIGMSVDANVIIFERIREELRLGKSPKSALDAGYDKAFLTIMDSHVTTLITAA
HHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHH
VLFQFGTGPVKGFAVSLSLGVIINLFTSLIGTKVIFDLFLYRGTVKKMSI
HHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA