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The map label for this gene is yciO [C]

Identifier: 118580209

GI number: 118580209

Start: 1915908

End: 1916516

Strand: Reverse

Name: yciO [C]

Synonym: Ppro_1789

Alternate gene names: 118580209

Gene position: 1916516-1915908 (Counterclockwise)

Preceding gene: 118580210

Following gene: 118580208

Centisome position: 47.82

GC content: 59.28

Gene sequence:

>609_bases
ATGCTGCTTGAAATTCACCCCGAACATCCCCAGCAACGACTGATCGCACGGGTCGTCGACTGCCTGCGCAATGGCGGCAT
TATCGCCTACCCGACCGATACGACCTACGGCATCGGCTGTTCCATTTTCAACAAAAAGGGAATCGAGCGCATCTACCGCA
TGAAACAGCGCGAACACAAGAAGCCGTTCTCGTTCATCTGCCCCAACCTCTCGGAAGTGGCCCGCTTCGCCAGGGTCAGC
AACACCGCCTTCAAGATCCTCAAGCGCTACCTCCCCGGTCCCTACACCTTCGTGCTGGAGGCGACCCGCGACGTACCCGA
TCTGCTGCTGACACGGCAGAAGACGGTGGGGATCAGGATCCCCGATAACCGCATCTGCCTTGAGATCGTGCAGATGCTGG
GCAGTCCCATCGTCACCACCAGCGCCAACCTGTCCGGCGACGAACCGACCGGCAACCCCGGTTTCATCGACGAAATCTTC
GGTCACCAGTTGGACATCGTCGTGGACGGGGGGATACTCACCAAGGAGGTCAGTTCCGTGGTGAACCTGGTGAACGATAC
CCCGGAGATTATCAGGGCCGGCATGGGTGACCTGTCGTGGTGCTCATGA

Upstream 100 bases:

>100_bases
TCCAGGCGCCTGATCAGGCTTCATCAGGGGTTGGCCGCGGGCGGCCGGCCCTTTTTCGCGTACCGCGCTTCACACCAACA
GTTGAAAAAGGTGATTCCGC

Downstream 100 bases:

>100_bases
CCAGACAGGGAGGGGAAGGTGCGTAAACGGACGATCCGCAACAGCATGCGCCTGCTGCTGGCGGCGCTTGTGCTGATCAT
CCTGGCCAGTTTCTACCATG

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MLLEIHPEHPQQRLIARVVDCLRNGGIIAYPTDTTYGIGCSIFNKKGIERIYRMKQREHKKPFSFICPNLSEVARFARVS
NTAFKILKRYLPGPYTFVLEATRDVPDLLLTRQKTVGIRIPDNRICLEIVQMLGSPIVTTSANLSGDEPTGNPGFIDEIF
GHQLDIVVDGGILTKEVSSVVNLVNDTPEIIRAGMGDLSWCS

Sequences:

>Translated_202_residues
MLLEIHPEHPQQRLIARVVDCLRNGGIIAYPTDTTYGIGCSIFNKKGIERIYRMKQREHKKPFSFICPNLSEVARFARVS
NTAFKILKRYLPGPYTFVLEATRDVPDLLLTRQKTVGIRIPDNRICLEIVQMLGSPIVTTSANLSGDEPTGNPGFIDEIF
GHQLDIVVDGGILTKEVSSVVNLVNDTPEIIRAGMGDLSWCS
>Mature_202_residues
MLLEIHPEHPQQRLIARVVDCLRNGGIIAYPTDTTYGIGCSIFNKKGIERIYRMKQREHKKPFSFICPNLSEVARFARVS
NTAFKILKRYLPGPYTFVLEATRDVPDLLLTRQKTVGIRIPDNRICLEIVQMLGSPIVTTSANLSGDEPTGNPGFIDEIF
GHQLDIVVDGGILTKEVSSVVNLVNDTPEIIRAGMGDLSWCS

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=150, Percent_Identity=36, Blast_Score=90, Evalue=1e-18,
Organism=Escherichia coli, GI87081864, Length=197, Percent_Identity=41.1167512690355, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI2367210, Length=162, Percent_Identity=30.2469135802469, Blast_Score=84, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17537239, Length=201, Percent_Identity=31.3432835820896, Blast_Score=80, Evalue=6e-16,
Organism=Saccharomyces cerevisiae, GI6321269, Length=185, Percent_Identity=26.4864864864865, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI78707274, Length=187, Percent_Identity=33.6898395721925, Blast_Score=94, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22525; Mature: 22525

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLEIHPEHPQQRLIARVVDCLRNGGIIAYPTDTTYGIGCSIFNKKGIERIYRMKQREHK
CEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
KPFSFICPNLSEVARFARVSNTAFKILKRYLPGPYTFVLEATRDVPDLLLTRQKTVGIRI
CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHEEEEC
PDNRICLEIVQMLGSPIVTTSANLSGDEPTGNPGFIDEIFGHQLDIVVDGGILTKEVSSV
CCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHCCCEEEEEEECCHHHHHHHHH
VNLVNDTPEIIRAGMGDLSWCS
HHHHCCCHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLLEIHPEHPQQRLIARVVDCLRNGGIIAYPTDTTYGIGCSIFNKKGIERIYRMKQREHK
CEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
KPFSFICPNLSEVARFARVSNTAFKILKRYLPGPYTFVLEATRDVPDLLLTRQKTVGIRI
CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHEEEEC
PDNRICLEIVQMLGSPIVTTSANLSGDEPTGNPGFIDEIFGHQLDIVVDGGILTKEVSSV
CCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHCCCEEEEEEECCHHHHHHHHH
VNLVNDTPEIIRAGMGDLSWCS
HHHHCCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]