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The map label for this gene is ygcF [C]

Identifier: 118580205

GI number: 118580205

Start: 1912856

End: 1913605

Strand: Reverse

Name: ygcF [C]

Synonym: Ppro_1785

Alternate gene names: 118580205

Gene position: 1913605-1912856 (Counterclockwise)

Preceding gene: 118580206

Following gene: 118580204

Centisome position: 47.74

GC content: 62.67

Gene sequence:

>750_bases
ATGAGTGAGTCACTCCCCATCGCCGAGATCTTCTCCTCCATCCAGGGGGAGGGGTACCTGGCAGGGCGGCGGCAGATCTT
CATCCGCCTGACCCGTTGCAACCTGGAATGCAGCTACTGCGATACCGGCTTTGGCGAAGGAGAATCGTGCCTGGTGGAGA
ACTCCCCCGGCTCCAACGTCTTCGAACATTTCCCCCGGGCAGTCGGCCTGGACCGGCTCATGGATATCCTGAACGCCTGG
ACCTGGGCGCTCCCCCGGGCACACCATTCCATAAGTCTCACCGGCGGAGAGCCGCTGCTCTTCGCCCCTCTGCTGTCGGA
CTGGCTTCCCCGGCTGCGCGGCATACTGCCGGTTCACCTGGAGACCAACGGCACCCTGCCGATTGAACTGGGCAGAATCA
TCAGGCTGGTGGATTACGTCAGCATGGACATGAAACTTCCCTCAACCGCCGCCTGTGGCGGGGAACTCTGGGATACGCAC
CGCCGGTTTCTGGAGACTGCCCGTGGGAAGAACGTCTCGGTCAAGATCGTGGTGGGGGAGCAAAGCGATGCTGCCGAGAT
CGAACAGGTCTGCCGAATCATCGCGCAAATCCGGCCGGACACTCCGCTCTTCCTCCAGCCACTCTCCCTGCCTGACAGCC
ACTGCGGCATCAGCGCCGCGCATCTCCTGCATCTGCAGGCCCTGGCCGCGGCACGACTTTCTGATGTGCGGGTGATTCCG
CAGATGCACAAGCTCATGGGGGTCCTGTGA

Upstream 100 bases:

>100_bases
CGTTTCCTGTTTGAACGGCTCTCGGAACACCTGAACAGCGATGTCATCAAGGTCGAGTCGGTGACGGTCTGGGAATCGGA
CAACGCATCGGCCTGCTACT

Downstream 100 bases:

>100_bases
TCATCGAAGAAATGACCATGCCCGAATTCGAGCAGGGCCTTGCCCGCTCGCGAACTGTTCTGATACCCTTCGGTTCGGTG
GAGGAGCACGGGCCGCACCT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MSESLPIAEIFSSIQGEGYLAGRRQIFIRLTRCNLECSYCDTGFGEGESCLVENSPGSNVFEHFPRAVGLDRLMDILNAW
TWALPRAHHSISLTGGEPLLFAPLLSDWLPRLRGILPVHLETNGTLPIELGRIIRLVDYVSMDMKLPSTAACGGELWDTH
RRFLETARGKNVSVKIVVGEQSDAAEIEQVCRIIAQIRPDTPLFLQPLSLPDSHCGISAAHLLHLQALAAARLSDVRVIP
QMHKLMGVL

Sequences:

>Translated_249_residues
MSESLPIAEIFSSIQGEGYLAGRRQIFIRLTRCNLECSYCDTGFGEGESCLVENSPGSNVFEHFPRAVGLDRLMDILNAW
TWALPRAHHSISLTGGEPLLFAPLLSDWLPRLRGILPVHLETNGTLPIELGRIIRLVDYVSMDMKLPSTAACGGELWDTH
RRFLETARGKNVSVKIVVGEQSDAAEIEQVCRIIAQIRPDTPLFLQPLSLPDSHCGISAAHLLHLQALAAARLSDVRVIP
QMHKLMGVL
>Mature_248_residues
SESLPIAEIFSSIQGEGYLAGRRQIFIRLTRCNLECSYCDTGFGEGESCLVENSPGSNVFEHFPRAVGLDRLMDILNAWT
WALPRAHHSISLTGGEPLLFAPLLSDWLPRLRGILPVHLETNGTLPIELGRIIRLVDYVSMDMKLPSTAACGGELWDTHR
RFLETARGKNVSVKIVVGEQSDAAEIEQVCRIIAQIRPDTPLFLQPLSLPDSHCGISAAHLLHLQALAAARLSDVRVIPQ
MHKLMGVL

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 27481; Mature: 27350

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESLPIAEIFSSIQGEGYLAGRRQIFIRLTRCNLECSYCDTGFGEGESCLVENSPGSNV
CCCCCCHHHHHHHHCCCCEEECCEEEEEEEEEECEEECCCCCCCCCCCEEEEECCCCCHH
FEHFPRAVGLDRLMDILNAWTWALPRAHHSISLTGGEPLLFAPLLSDWLPRLRGILPVHL
HHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEHHHHHHHHHHHHHCCEEEEE
ETNGTLPIELGRIIRLVDYVSMDMKLPSTAACGGELWDTHRRFLETARGKNVSVKIVVGE
ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC
QSDAAEIEQVCRIIAQIRPDTPLFLQPLSLPDSHCGISAAHLLHLQALAAARLSDVRVIP
CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QMHKLMGVL
HHHHHHCCC
>Mature Secondary Structure 
SESLPIAEIFSSIQGEGYLAGRRQIFIRLTRCNLECSYCDTGFGEGESCLVENSPGSNV
CCCCCHHHHHHHHCCCCEEECCEEEEEEEEEECEEECCCCCCCCCCCEEEEECCCCCHH
FEHFPRAVGLDRLMDILNAWTWALPRAHHSISLTGGEPLLFAPLLSDWLPRLRGILPVHL
HHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEHHHHHHHHHHHHHCCEEEEE
ETNGTLPIELGRIIRLVDYVSMDMKLPSTAACGGELWDTHRRFLETARGKNVSVKIVVGE
ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC
QSDAAEIEQVCRIIAQIRPDTPLFLQPLSLPDSHCGISAAHLLHLQALAAARLSDVRVIP
CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QMHKLMGVL
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]