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The map label for this gene is yadT [C]

Identifier: 118579901

GI number: 118579901

Start: 1579808

End: 1580845

Strand: Direct

Name: yadT [C]

Synonym: Ppro_1477

Alternate gene names: 118579901

Gene position: 1579808-1580845 (Clockwise)

Preceding gene: 118579900

Following gene: 118579902

Centisome position: 39.42

GC content: 61.37

Gene sequence:

>1038_bases
ATGCTGCGTTCCGTTGCTGTGGCGGTTGTTCTGTTGATCACCCTTGCTTCCACCGTCTCCGCCCGCACCATTACCGACAT
GAGCGGTCGCCGGGTCAGTATCCCCGACAGGATCAACAGGGCCGTGGCCCTGTCACCGCCGGCAACCTATCTGCTTTTCT
GCATCGCCCCCGAGCTTGTCTGCGGGATCAATTTCCCGCTCCCGGGCAACGAGAAATTCTACACGGTGGAGCGTTTCAAG
AAACTGCCGGTCATTGGCGGCATGGTGGGGGAGGGGAGAACCCTCAATCTGGAGGTTCTGCTGAAGGTCAAGCCGGATGT
GGCTTTTCTCTGGGACCGGAGAGTCGGCGGGACCGCGGCGTTCAACGAACAGTACATACGATCGCTGTCCAAGCTGGGCA
TTCCCACGGTGGCGGTGCGGCTGGATACCCTGGAGGATTACCCCGCTGCCCTGCTGTTCATGGGGGACGTGCTGGGCAGG
CGTGAGCGGGCAGCCAGGCTCAACCGCTATGCCGTGACTGCCACGGCGAAAGTCAAGCGGAGTCTGGCCGGACTGCCGGA
GTCGAAACGAGTCAGGGTCTACTACGCCGAGGGAGTGGACGGCCTGGCCACGGAGGGGGAGAGTTCCATGCATACGGAGC
TGATCCCCTTGAGCGGTGGTCGGAACGTCTGCCGCATGAAGCCCACCAGCCTGAACGGCCAGGAGCGGATCTCCATGGAG
CAGCTCCTTTTGTACGACCCGGATGTGATTCTGGTCAAGGAGCAGATCTGTTTCCAGCGCATCTGGAAAGATCCCCGCTG
GAAGCGATTGCGCGCCGTACGAAACAAACGGGTCTACCTTGTTCCCCATGTGCCCTTCAACTGGTTCGACCGTCCGCCGT
CGTACATGCGGCTCTTGGGCATCCAGTGGCTGACCAACCTGCTGCACCCCGATCGCTATCCCATGGACATGGTCAGGGAG
ACCAAGGCCTTCTACCGCCTGTTCGTAGGCTTGGAACTTTCGGACCGCGAGGCGCGAGAGGTGCTCTGGCCCCGATAA

Upstream 100 bases:

>100_bases
TCTTTTTGAAAGGGGGTTTGCCATGGTGTAAGCGCTGCGTCGGCGCGTCGTTGCGTGAATAGAAAACTTTGCTTCCGGCT
GTGCCGGATGAGGAGGATGT

Downstream 100 bases:

>100_bases
ATTCAGTTCCCGGTATTCCTACGTTGTGGAGACGAGGCTGAGTCAACAACAGATTGCGGCACCAACAGTTGTGGAGGTGA
ATACATGGAGTTGAGGCATT

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MLRSVAVAVVLLITLASTVSARTITDMSGRRVSIPDRINRAVALSPPATYLLFCIAPELVCGINFPLPGNEKFYTVERFK
KLPVIGGMVGEGRTLNLEVLLKVKPDVAFLWDRRVGGTAAFNEQYIRSLSKLGIPTVAVRLDTLEDYPAALLFMGDVLGR
RERAARLNRYAVTATAKVKRSLAGLPESKRVRVYYAEGVDGLATEGESSMHTELIPLSGGRNVCRMKPTSLNGQERISME
QLLLYDPDVILVKEQICFQRIWKDPRWKRLRAVRNKRVYLVPHVPFNWFDRPPSYMRLLGIQWLTNLLHPDRYPMDMVRE
TKAFYRLFVGLELSDREAREVLWPR

Sequences:

>Translated_345_residues
MLRSVAVAVVLLITLASTVSARTITDMSGRRVSIPDRINRAVALSPPATYLLFCIAPELVCGINFPLPGNEKFYTVERFK
KLPVIGGMVGEGRTLNLEVLLKVKPDVAFLWDRRVGGTAAFNEQYIRSLSKLGIPTVAVRLDTLEDYPAALLFMGDVLGR
RERAARLNRYAVTATAKVKRSLAGLPESKRVRVYYAEGVDGLATEGESSMHTELIPLSGGRNVCRMKPTSLNGQERISME
QLLLYDPDVILVKEQICFQRIWKDPRWKRLRAVRNKRVYLVPHVPFNWFDRPPSYMRLLGIQWLTNLLHPDRYPMDMVRE
TKAFYRLFVGLELSDREAREVLWPR
>Mature_345_residues
MLRSVAVAVVLLITLASTVSARTITDMSGRRVSIPDRINRAVALSPPATYLLFCIAPELVCGINFPLPGNEKFYTVERFK
KLPVIGGMVGEGRTLNLEVLLKVKPDVAFLWDRRVGGTAAFNEQYIRSLSKLGIPTVAVRLDTLEDYPAALLFMGDVLGR
RERAARLNRYAVTATAKVKRSLAGLPESKRVRVYYAEGVDGLATEGESSMHTELIPLSGGRNVCRMKPTSLNGQERISME
QLLLYDPDVILVKEQICFQRIWKDPRWKRLRAVRNKRVYLVPHVPFNWFDRPPSYMRLLGIQWLTNLLHPDRYPMDMVRE
TKAFYRLFVGLELSDREAREVLWPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 39289; Mature: 39289

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRSVAVAVVLLITLASTVSARTITDMSGRRVSIPDRINRAVALSPPATYLLFCIAPELV
CCHHHHHHHHHHHHHHHHHHHHEEECCCCCEEECHHHHCCEEEECCCHHHHHHHHHHHHH
CGINFPLPGNEKFYTVERFKKLPVIGGMVGEGRTLNLEVLLKVKPDVAFLWDRRVGGTAA
HCCCCCCCCCCCEEEHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCEEEEECCCCCCCCH
FNEQYIRSLSKLGIPTVAVRLDTLEDYPAALLFMGDVLGRRERAARLNRYAVTATAKVKR
HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHH
SLAGLPESKRVRVYYAEGVDGLATEGESSMHTELIPLSGGRNVCRMKPTSLNGQERISME
HHHCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCHHHHCHH
QLLLYDPDVILVKEQICFQRIWKDPRWKRLRAVRNKRVYLVPHVPFNWFDRPPSYMRLLG
HHHEECCCEEEEHHHHHHHHHCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHH
IQWLTNLLHPDRYPMDMVRETKAFYRLFVGLELSDREAREVLWPR
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCC
>Mature Secondary Structure
MLRSVAVAVVLLITLASTVSARTITDMSGRRVSIPDRINRAVALSPPATYLLFCIAPELV
CCHHHHHHHHHHHHHHHHHHHHEEECCCCCEEECHHHHCCEEEECCCHHHHHHHHHHHHH
CGINFPLPGNEKFYTVERFKKLPVIGGMVGEGRTLNLEVLLKVKPDVAFLWDRRVGGTAA
HCCCCCCCCCCCEEEHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCEEEEECCCCCCCCH
FNEQYIRSLSKLGIPTVAVRLDTLEDYPAALLFMGDVLGRRERAARLNRYAVTATAKVKR
HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHH
SLAGLPESKRVRVYYAEGVDGLATEGESSMHTELIPLSGGRNVCRMKPTSLNGQERISME
HHHCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCHHHHCHH
QLLLYDPDVILVKEQICFQRIWKDPRWKRLRAVRNKRVYLVPHVPFNWFDRPPSYMRLLG
HHHEECCCEEEEHHHHHHHHHCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHH
IQWLTNLLHPDRYPMDMVRETKAFYRLFVGLELSDREAREVLWPR
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]