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The map label for this gene is ygcA [C]

Identifier: 118579897

GI number: 118579897

Start: 1575538

End: 1576350

Strand: Direct

Name: ygcA [C]

Synonym: Ppro_1473

Alternate gene names: 118579897

Gene position: 1575538-1576350 (Clockwise)

Preceding gene: 118579896

Following gene: 118579898

Centisome position: 39.31

GC content: 63.59

Gene sequence:

>813_bases
ATGGACAGGATTGAAATCGACTGGAATGCGGCATGGCAGAAGGCGCGGGAGGGGTTCTCACAAGGAAGCGATTCCTCCTT
CTGGGACAAACGGGCGCCCGCCTTTGCCCGGCACGTGAAGGAAACTGACTACGAGAAACGTTTCCTTGATCTGATGCAGC
CCGCCCCCTCCTGGAGCGTGCTGGATTTCGGCTGCGGCGCCGGCACCCTGGCGATTCCGCTGGCCAGACGGGTCGCCTCG
GTGACTGCGGTGGACTTCTCCAGGGTGATGCTGGACCTCTTGCGCCAATCATGCCGGGAAGAGGGGATCACCAACGTCAC
CCCTCTCCATGGCAGTTGGGACGATGACTGGGAGAGTCTGGGCATCGGAAGCCATGACGCGGTGATCGCTTCCCGCTCCC
TGGTGGCCCTTGACCTGCGTGAGGCGATCACCAAGCTGGACCGGGCGGCGCGCAGGTCGGTCCACATCTCCTCGCTGGTG
GGTGATGGCCCCCAGGACCGGCGCATCTACGAGGCGGTGGGCAGGACGCTGGTATCCGGGCCGGATTACATCTACCTCTA
CAACCTGCTGTACCAGATGGGCATCCGGGCCACGATCAACTTCATTACTCACCGGGAGTGGAAGGTCTACGGTAACCTGG
ACGAGGCGCTGGAGGGGAACTGCTGGATGCTGAAGGATGTCACCCGGGAAGAGCTGGGACTGCTCCGGCGGTATCTGGCC
GCGACCCTGCAGGCCCATGGCAGCGGCTGGCGCATGCCCGAGCCAAGGGTGGTGCGCTGGGCCCTGATCAGCTGGGAGAA
GGATACGGAGTGA

Upstream 100 bases:

>100_bases
GTACTAGCTGAAAGACAAGGGACGTGACTCGTGACTGGTGACTGGGCCAGCCACGAGTCACCAGCCACGAGTTACGAGTT
ACGAGTTACGGGGAGATGCA

Downstream 100 bases:

>100_bases
GGAGTGGATGCGCCGTTGTGTGCGGGGCGTGACAACGTTGTCCGGCCGTGAAATCGCGGTATGTTTGTGAGGCAGGCGGC
CGCGGTTGGCCGGGATCGAG

Product: type 12 methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MDRIEIDWNAAWQKAREGFSQGSDSSFWDKRAPAFARHVKETDYEKRFLDLMQPAPSWSVLDFGCGAGTLAIPLARRVAS
VTAVDFSRVMLDLLRQSCREEGITNVTPLHGSWDDDWESLGIGSHDAVIASRSLVALDLREAITKLDRAARRSVHISSLV
GDGPQDRRIYEAVGRTLVSGPDYIYLYNLLYQMGIRATINFITHREWKVYGNLDEALEGNCWMLKDVTREELGLLRRYLA
ATLQAHGSGWRMPEPRVVRWALISWEKDTE

Sequences:

>Translated_270_residues
MDRIEIDWNAAWQKAREGFSQGSDSSFWDKRAPAFARHVKETDYEKRFLDLMQPAPSWSVLDFGCGAGTLAIPLARRVAS
VTAVDFSRVMLDLLRQSCREEGITNVTPLHGSWDDDWESLGIGSHDAVIASRSLVALDLREAITKLDRAARRSVHISSLV
GDGPQDRRIYEAVGRTLVSGPDYIYLYNLLYQMGIRATINFITHREWKVYGNLDEALEGNCWMLKDVTREELGLLRRYLA
ATLQAHGSGWRMPEPRVVRWALISWEKDTE
>Mature_270_residues
MDRIEIDWNAAWQKAREGFSQGSDSSFWDKRAPAFARHVKETDYEKRFLDLMQPAPSWSVLDFGCGAGTLAIPLARRVAS
VTAVDFSRVMLDLLRQSCREEGITNVTPLHGSWDDDWESLGIGSHDAVIASRSLVALDLREAITKLDRAARRSVHISSLV
GDGPQDRRIYEAVGRTLVSGPDYIYLYNLLYQMGIRATINFITHREWKVYGNLDEALEGNCWMLKDVTREELGLLRRYLA
ATLQAHGSGWRMPEPRVVRWALISWEKDTE

Specific function: Could Be A 23s rRNA (Uracil-5-)-Methyltransferase. [C]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: NA

Molecular weight: Translated: 30729; Mature: 30729

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIEIDWNAAWQKAREGFSQGSDSSFWDKRAPAFARHVKETDYEKRFLDLMQPAPSWSV
CCEEEECHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHCHHHHHHHHHHCCCCCCCE
LDFGCGAGTLAIPLARRVASVTAVDFSRVMLDLLRQSCREEGITNVTPLHGSWDDDWESL
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHC
GIGSHDAVIASRSLVALDLREAITKLDRAARRSVHISSLVGDGPQDRRIYEAVGRTLVSG
CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
PDYIYLYNLLYQMGIRATINFITHREWKVYGNLDEALEGNCWMLKDVTREELGLLRRYLA
CCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCEEEEHHCCHHHHHHHHHHHH
ATLQAHGSGWRMPEPRVVRWALISWEKDTE
HHHHHCCCCCCCCCCCEEEEEEEECCCCCC
>Mature Secondary Structure
MDRIEIDWNAAWQKAREGFSQGSDSSFWDKRAPAFARHVKETDYEKRFLDLMQPAPSWSV
CCEEEECHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHCHHHHHHHHHHCCCCCCCE
LDFGCGAGTLAIPLARRVASVTAVDFSRVMLDLLRQSCREEGITNVTPLHGSWDDDWESL
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHC
GIGSHDAVIASRSLVALDLREAITKLDRAARRSVHISSLVGDGPQDRRIYEAVGRTLVSG
CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
PDYIYLYNLLYQMGIRATINFITHREWKVYGNLDEALEGNCWMLKDVTREELGLLRRYLA
CCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCEEEEHHCCHHHHHHHHHHHH
ATLQAHGSGWRMPEPRVVRWALISWEKDTE
HHHHHCCCCCCCCCCCEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]