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The map label for this gene is ydeM [C]

Identifier: 118579780

GI number: 118579780

Start: 1434610

End: 1435899

Strand: Reverse

Name: ydeM [C]

Synonym: Ppro_1353

Alternate gene names: 118579780

Gene position: 1435899-1434610 (Counterclockwise)

Preceding gene: 118579781

Following gene: 118579772

Centisome position: 35.83

GC content: 65.19

Gene sequence:

>1290_bases
ATGCAGCTTTCGCACTACGTCACCACCTTCCCCTGCCCGGACAAGCCGGGGCGACTTTTGCTCCTGGCCACCCGGCGCTG
CGCCGTGATGGAGCTGTCCGACGAACTGTGGCAGCGGGTGCGGGACGGCGGGGAGATGGAAGAGGAAGAGCGCGAGACCC
TGCAGCGCCTGGGGGTGCTGGTGGAGGACCGGGAGGCGGAGAAGGAGGAGATGCGCGAGACCTTCACCCGCATCAACAAG
GAGAGCCGCCATCTGGCGGTGGTGGTCGCCCTGACCATGGCGTGCAACCTGGCCTGCCCCTACTGCTTCGAGGCCCCCTT
CCGGGGGGAGCAGACCATGGACGACGCCATTGCCGACCTGCTGATCCGGCGCCTGAACGAACGCATGGCCCAGGGGCTGG
ATCTGACCGTGGATTTCTACGGCGGCGAGGCGCTGCTACAGCTTACGCTTCTGAAACGCATCGCCACCGCCCTGCAAAGG
GCCGCCGGTGAACATGGCGTGACGTTCCAGTTCAACATCTTCAGCAACGGGACGCTTTTGACCCGGCCCGTGGTGGAGGA
GCTGCTCCCCCTGGGACTGGCTGCGGTGCGCCTCACCCTGGACGGCCCGCCGGACATCCACGACAGCCAGCGCCCCTTCG
TCTCCGGCCAGGAGAGCTTCGCCACCATCATGGAGAACATTCGCGCCATCCACGACATCCTGCCCATCGACCTGGGGGGC
AACTACACCCGGGAGAACTACCGCCGTTTCCCGGAGCTTTTGGACCTGCTGATTGCCGAAGGGATCGATCCGGCCAGGTT
CAAGGCGGTCGGCTTCTCGCCGGTGGTGCCAAGGGCCGACGGAAGCGTAGCCGGCGACCTGGGCTCCGCCTGCCTGGCCA
GCGGCGATTCCTGGACCTTTCAGGCCGGGCTGTTCCTGCGGGCCGAGACCATCCGCCGCAGCTTCCCGGTGCCGAAACTG
AAGGCTGGCGCCTGCGTGGTGGAGTTCGAAAACGACCTGGTGGTGAACTGGGATGGCGGCATCTACAAGTGCCCGATCTT
CATGGGGGATGAGTCACTTAAGGTCGGCTCCCTGGCCGAGGGGATCAACGATTACCGGGAGTCCCACAATCTGGACCTGT
GGAAGAACGAAGAGTGCCTGGAGTGCGCCTACCTGCCGCTCTGCTTCGGCGGCTGCCGCTTCCTGGCCAGGCTGAAGACG
GGAACAATGGATTGCGTGGACTGCCGAAAGGAACTGCTGGACGCCACCCTGGAGACCATCATCAGACAGGACCTGGGGCT
GGACAGGTGA

Upstream 100 bases:

>100_bases
AATTGAAGATGGTAACAACGCATTCACCTTTCTCCTGACACCTTCCGCCTGAACTAAAAGCAACGAGTTCACATCATTCA
ATGCCTGCGAGGAAAAATTC

Downstream 100 bases:

>100_bases
ACGGAACTAAACCCACAACCGGATCTCACACGGAGACACAAAGGGCACGAAGAAAGACTGAAACAAGCTGAAAGAAAAGG
ATTTTCGATTTACTTCACTA

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Arylsulfatase Regulator; Radical SAM Family Protein; Arylsulfatase Regulator Fe-S Oxidoreductase; AstB/ChuR-Related Protein; Radical Sam Domain Protein; Heme Biosynthesis Related Protein; Arylsulfatase Regulatory Protein; Fe-S Oxidoreductases; Arylsulfatase-Activating AtsB; Heme Biosynthesis Family Protein; Transcriptional Regulator; Radical Sam Protein; Fe-S Oxidoreductase; Anaerobic Sulfatase-Maturase Family Protein; Radical SAM

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MQLSHYVTTFPCPDKPGRLLLLATRRCAVMELSDELWQRVRDGGEMEEEERETLQRLGVLVEDREAEKEEMRETFTRINK
ESRHLAVVVALTMACNLACPYCFEAPFRGEQTMDDAIADLLIRRLNERMAQGLDLTVDFYGGEALLQLTLLKRIATALQR
AAGEHGVTFQFNIFSNGTLLTRPVVEELLPLGLAAVRLTLDGPPDIHDSQRPFVSGQESFATIMENIRAIHDILPIDLGG
NYTRENYRRFPELLDLLIAEGIDPARFKAVGFSPVVPRADGSVAGDLGSACLASGDSWTFQAGLFLRAETIRRSFPVPKL
KAGACVVEFENDLVVNWDGGIYKCPIFMGDESLKVGSLAEGINDYRESHNLDLWKNEECLECAYLPLCFGGCRFLARLKT
GTMDCVDCRKELLDATLETIIRQDLGLDR

Sequences:

>Translated_429_residues
MQLSHYVTTFPCPDKPGRLLLLATRRCAVMELSDELWQRVRDGGEMEEEERETLQRLGVLVEDREAEKEEMRETFTRINK
ESRHLAVVVALTMACNLACPYCFEAPFRGEQTMDDAIADLLIRRLNERMAQGLDLTVDFYGGEALLQLTLLKRIATALQR
AAGEHGVTFQFNIFSNGTLLTRPVVEELLPLGLAAVRLTLDGPPDIHDSQRPFVSGQESFATIMENIRAIHDILPIDLGG
NYTRENYRRFPELLDLLIAEGIDPARFKAVGFSPVVPRADGSVAGDLGSACLASGDSWTFQAGLFLRAETIRRSFPVPKL
KAGACVVEFENDLVVNWDGGIYKCPIFMGDESLKVGSLAEGINDYRESHNLDLWKNEECLECAYLPLCFGGCRFLARLKT
GTMDCVDCRKELLDATLETIIRQDLGLDR
>Mature_429_residues
MQLSHYVTTFPCPDKPGRLLLLATRRCAVMELSDELWQRVRDGGEMEEEERETLQRLGVLVEDREAEKEEMRETFTRINK
ESRHLAVVVALTMACNLACPYCFEAPFRGEQTMDDAIADLLIRRLNERMAQGLDLTVDFYGGEALLQLTLLKRIATALQR
AAGEHGVTFQFNIFSNGTLLTRPVVEELLPLGLAAVRLTLDGPPDIHDSQRPFVSGQESFATIMENIRAIHDILPIDLGG
NYTRENYRRFPELLDLLIAEGIDPARFKAVGFSPVVPRADGSVAGDLGSACLASGDSWTFQAGLFLRAETIRRSFPVPKL
KAGACVVEFENDLVVNWDGGIYKCPIFMGDESLKVGSLAEGINDYRESHNLDLWKNEECLECAYLPLCFGGCRFLARLKT
GTMDCVDCRKELLDATLETIIRQDLGLDR

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47987; Mature: 47987

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLSHYVTTFPCPDKPGRLLLLATRRCAVMELSDELWQRVRDGGEMEEEERETLQRLGVL
CCCCCCEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCH
VEDREAEKEEMRETFTRINKESRHLAVVVALTMACNLACPYCFEAPFRGEQTMDDAIADL
HCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHH
LIRRLNERMAQGLDLTVDFYGGEALLQLTLLKRIATALQRAAGEHGVTFQFNIFSNGTLL
HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEE
TRPVVEELLPLGLAAVRLTLDGPPDIHDSQRPFVSGQESFATIMENIRAIHDILPIDLGG
EHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
NYTRENYRRFPELLDLLIAEGIDPARFKAVGFSPVVPRADGSVAGDLGSACLASGDSWTF
CCCHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEE
QAGLFLRAETIRRSFPVPKLKAGACVVEFENDLVVNWDGGIYKCPIFMGDESLKVGSLAE
ECCCEEEHHHHHHHCCCCCCCCCEEEEEECCCEEEEECCCEEEEEEEECCCCCCHHHHHH
GINDYRESHNLDLWKNEECLECAYLPLCFGGCRFLARLKTGTMDCVDCRKELLDATLETI
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IRQDLGLDR
HHHHCCCCC
>Mature Secondary Structure
MQLSHYVTTFPCPDKPGRLLLLATRRCAVMELSDELWQRVRDGGEMEEEERETLQRLGVL
CCCCCCEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCH
VEDREAEKEEMRETFTRINKESRHLAVVVALTMACNLACPYCFEAPFRGEQTMDDAIADL
HCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHH
LIRRLNERMAQGLDLTVDFYGGEALLQLTLLKRIATALQRAAGEHGVTFQFNIFSNGTLL
HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEE
TRPVVEELLPLGLAAVRLTLDGPPDIHDSQRPFVSGQESFATIMENIRAIHDILPIDLGG
EHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
NYTRENYRRFPELLDLLIAEGIDPARFKAVGFSPVVPRADGSVAGDLGSACLASGDSWTF
CCCHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEE
QAGLFLRAETIRRSFPVPKLKAGACVVEFENDLVVNWDGGIYKCPIFMGDESLKVGSLAE
ECCCEEEHHHHHHHCCCCCCCCCEEEEEECCCEEEEECCCEEEEEEEECCCCCCHHHHHH
GINDYRESHNLDLWKNEECLECAYLPLCFGGCRFLARLKTGTMDCVDCRKELLDATLETI
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IRQDLGLDR
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA