Click here to switch to the map view.

The map label for this gene is cph2 [H]

Identifier: 118579769

GI number: 118579769

Start: 1419210

End: 1420169

Strand: Reverse

Name: cph2 [H]

Synonym: Ppro_1341

Alternate gene names: 118579769

Gene position: 1420169-1419210 (Counterclockwise)

Preceding gene: 118579770

Following gene: 118579767

Centisome position: 35.43

GC content: 62.71

Gene sequence:

>960_bases
ATGACTTCCGACATCTCTTCACCCAGCGAACCACAAGCAGCAAGTGCACCCGAACCACTCCCGCGTCTGTTGATCGTCGA
TGACGAGCCGACCAACATCCAGAGCCTGTACGAGATATTCCGGAGTGATCACGAGGTGTTCATCGCAACCAGCGCCCTGC
AGGGACTGGAGATGTGCGACACCAACCCGCCAGACCTGATCATGCTGGACATCGTCATGCCGAGCATGAACGGGCTGGAA
ATGTGTCGCCAGCTTAAGAGCGACCAGAGGACACGGGATATCCCGGTAATCTTCGTCACCGCCTACGGTAATCCCGAGGA
AGAGACCCGCGGACTGGAGGCAGGGGCGGTGGACTTCATCATGAAGCCGTTCAACAGCGCGGTGGTCCGCGCCAGGGTCC
AGACCCACCTGACCATGAAGGCCCAGGCGGACCTGCTCCGCTCCATGGCGTTCATCGACGGCCTGACCGGTGTCGCCAAC
CGCCGCCGCTTCGACGAGAGCCTGGAGGCGGAGTGGCGCCAATGCCGGCGACACAGGGCCCCCCTGGCCCTGCTGATGAT
CGATATCGATCACTTCAAGAAGTACAACGACAGCTATGGCCACCAGGAGGGGGATGTCTGCCTGCGAAAGATTGCCACGC
TGCTGCGGGAAGAGTTGGGGCGGCCCCACGATCTCGTCGCGCGCTACGGCGGCGAGGAGTTCGCCTGTCTTTTGCCGGGG
GTGGACATGGAAGGCGCCATGTACAAGGCCCAGTCCATCCTGACGGCGCTCCACAGACAGGCCATTCCCCACGTATCGTC
CGAGACGGCGCCCTTCGTCACCATCAGCCTCGGGGTGGCGGTCACGTCTCCGGGACCGGAGCCAAGGCACGGGCAGCTGG
TGGCCACGGCCGACACCCAACTCTACAAAGCCAAACAGCAGGGACGCAACCGCATCTGCGGCCAGGAAGTAACCGACTGA

Upstream 100 bases:

>100_bases
ATCTGCGCCAACGGTTCTTCCTGCTGGACGATGCCGTCAAACGGCTCAATTTTCCCGCTGCCGCCACCCAATGCCGAATC
ATTCGAGAGGAACTATCACC

Downstream 100 bases:

>100_bases
AACGGCTGGAGCGGCTAACAGCCCCGGATATGACTATTTTCGGATTTCAAAGAAATATGGAGAGGAGAGAGCGATCGTTT
TCGGGGAGTCAATACTCCTC

Product: response regulator receiver modulated diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MTSDISSPSEPQAASAPEPLPRLLIVDDEPTNIQSLYEIFRSDHEVFIATSALQGLEMCDTNPPDLIMLDIVMPSMNGLE
MCRQLKSDQRTRDIPVIFVTAYGNPEEETRGLEAGAVDFIMKPFNSAVVRARVQTHLTMKAQADLLRSMAFIDGLTGVAN
RRRFDESLEAEWRQCRRHRAPLALLMIDIDHFKKYNDSYGHQEGDVCLRKIATLLREELGRPHDLVARYGGEEFACLLPG
VDMEGAMYKAQSILTALHRQAIPHVSSETAPFVTISLGVAVTSPGPEPRHGQLVATADTQLYKAKQQGRNRICGQEVTD

Sequences:

>Translated_319_residues
MTSDISSPSEPQAASAPEPLPRLLIVDDEPTNIQSLYEIFRSDHEVFIATSALQGLEMCDTNPPDLIMLDIVMPSMNGLE
MCRQLKSDQRTRDIPVIFVTAYGNPEEETRGLEAGAVDFIMKPFNSAVVRARVQTHLTMKAQADLLRSMAFIDGLTGVAN
RRRFDESLEAEWRQCRRHRAPLALLMIDIDHFKKYNDSYGHQEGDVCLRKIATLLREELGRPHDLVARYGGEEFACLLPG
VDMEGAMYKAQSILTALHRQAIPHVSSETAPFVTISLGVAVTSPGPEPRHGQLVATADTQLYKAKQQGRNRICGQEVTD
>Mature_318_residues
TSDISSPSEPQAASAPEPLPRLLIVDDEPTNIQSLYEIFRSDHEVFIATSALQGLEMCDTNPPDLIMLDIVMPSMNGLEM
CRQLKSDQRTRDIPVIFVTAYGNPEEETRGLEAGAVDFIMKPFNSAVVRARVQTHLTMKAQADLLRSMAFIDGLTGVANR
RRFDESLEAEWRQCRRHRAPLALLMIDIDHFKKYNDSYGHQEGDVCLRKIATLLREELGRPHDLVARYGGEEFACLLPGV
DMEGAMYKAQSILTALHRQAIPHVSSETAPFVTISLGVAVTSPGPEPRHGQLVATADTQLYKAKQQGRNRICGQEVTD

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=179, Percent_Identity=36.8715083798883, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI87082007, Length=189, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787262, Length=179, Percent_Identity=32.9608938547486, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87081881, Length=167, Percent_Identity=39.5209580838323, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=32.2981366459627, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=38.3233532934132, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787802, Length=185, Percent_Identity=31.3513513513514, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788381, Length=164, Percent_Identity=32.9268292682927, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1788394, Length=121, Percent_Identity=39.6694214876033, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787056, Length=166, Percent_Identity=31.9277108433735, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786784, Length=117, Percent_Identity=37.6068376068376, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787541, Length=173, Percent_Identity=30.635838150289, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786599, Length=114, Percent_Identity=35.0877192982456, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788956, Length=169, Percent_Identity=36.094674556213, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788085, Length=173, Percent_Identity=31.7919075144509, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790863, Length=148, Percent_Identity=32.4324324324324, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788550, Length=131, Percent_Identity=31.2977099236641, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789809, Length=123, Percent_Identity=32.520325203252, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790860, Length=118, Percent_Identity=33.8983050847458, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI87082012, Length=115, Percent_Identity=30.4347826086957, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 35488; Mature: 35357

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSDISSPSEPQAASAPEPLPRLLIVDDEPTNIQSLYEIFRSDHEVFIATSALQGLEMCD
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHC
TNPPDLIMLDIVMPSMNGLEMCRQLKSDQRTRDIPVIFVTAYGNPEEETRGLEAGAVDFI
CCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHCCCCCCHHHHH
MKPFNSAVVRARVQTHLTMKAQADLLRSMAFIDGLTGVANRRRFDESLEAEWRQCRRHRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PLALLMIDIDHFKKYNDSYGHQEGDVCLRKIATLLREELGRPHDLVARYGGEEFACLLPG
CEEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEECC
VDMEGAMYKAQSILTALHRQAIPHVSSETAPFVTISLGVAVTSPGPEPRHGQLVATADTQ
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEECCHH
LYKAKQQGRNRICGQEVTD
HHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TSDISSPSEPQAASAPEPLPRLLIVDDEPTNIQSLYEIFRSDHEVFIATSALQGLEMCD
CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHC
TNPPDLIMLDIVMPSMNGLEMCRQLKSDQRTRDIPVIFVTAYGNPEEETRGLEAGAVDFI
CCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHCCCCCCHHHHH
MKPFNSAVVRARVQTHLTMKAQADLLRSMAFIDGLTGVANRRRFDESLEAEWRQCRRHRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PLALLMIDIDHFKKYNDSYGHQEGDVCLRKIATLLREELGRPHDLVARYGGEEFACLLPG
CEEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEECC
VDMEGAMYKAQSILTALHRQAIPHVSSETAPFVTISLGVAVTSPGPEPRHGQLVATADTQ
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEECCHH
LYKAKQQGRNRICGQEVTD
HHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]