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The map label for this gene is tnpR [H]

Identifier: 118579753

GI number: 118579753

Start: 1399719

End: 1400297

Strand: Reverse

Name: tnpR [H]

Synonym: Ppro_1325

Alternate gene names: 118579753

Gene position: 1400297-1399719 (Counterclockwise)

Preceding gene: 118579755

Following gene: 118579751

Centisome position: 34.94

GC content: 48.88

Gene sequence:

>579_bases
GTGGGAGAGCGAACGGGAAGGGTTCTAGGGTACAAGCGGGTATCGACATTTGAGCAGAACACGGCTAGGCAGCTGGAGGG
CGTGAAACTTGATCTGGTATTTGAGGACAAGGTAAGCGGAAAGAGCGTGGATAGGCCAGAGCTGAAGCAACTCATGCGTA
CAGCGTACAAAGGTGATCTTGTTGTAGTGCATTCGATGGATAGGCTTGCTAGGAATCTGATTGACCTTAAGCTGATCGTG
TCTGAGTTGGTAGCAGGTGGGGCTAGGGTACAGTTCGTGAAAGAGGGGCTTACCTTCTCTGGTGAGGCTGATCCGTACTC
AGAGCTAATGCTTAACATGATGGGAAGCTTTGCGGAGTTTGAGCGACAGCTTATACGATCAAGGCAGATGGAAGGCATTG
CCATTAGAAAAGCAGCTGGCGGTTATAAAGGGGTAGGGCGCAAGAGGTCTATCACCGATGAACAGATAGAGGTGATCAAA
AGCAGAGTTGCAGCAGGTGAGAAGAAGACAGTGATAGCCAAGGATATGGGTATAAGCAGAGAGTCAATTTACAAGCTCTT
GAAGGCTAATGCTAACTAA

Upstream 100 bases:

>100_bases
ACACATTTTCTGTGTATTAAGGGTTCAAAAGAATATTGTTTGACATTTGCCCAGATAAGTCTTAGATGGTTAATACACAA
ACAGGACAGGAGGGCATGCT

Downstream 100 bases:

>100_bases
TACGAATAGATACGCTTGTCTGTTCAGCTCAATGCACGTTGTCTGATAGCAGGCAAAGCAGGCGTCCTGTGCGCCCCCTG
AAGCCCCTCCCGTATCGCCC

Product: resolvase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MGERTGRVLGYKRVSTFEQNTARQLEGVKLDLVFEDKVSGKSVDRPELKQLMRTAYKGDLVVVHSMDRLARNLIDLKLIV
SELVAGGARVQFVKEGLTFSGEADPYSELMLNMMGSFAEFERQLIRSRQMEGIAIRKAAGGYKGVGRKRSITDEQIEVIK
SRVAAGEKKTVIAKDMGISRESIYKLLKANAN

Sequences:

>Translated_192_residues
MGERTGRVLGYKRVSTFEQNTARQLEGVKLDLVFEDKVSGKSVDRPELKQLMRTAYKGDLVVVHSMDRLARNLIDLKLIV
SELVAGGARVQFVKEGLTFSGEADPYSELMLNMMGSFAEFERQLIRSRQMEGIAIRKAAGGYKGVGRKRSITDEQIEVIK
SRVAAGEKKTVIAKDMGISRESIYKLLKANAN
>Mature_191_residues
GERTGRVLGYKRVSTFEQNTARQLEGVKLDLVFEDKVSGKSVDRPELKQLMRTAYKGDLVVVHSMDRLARNLIDLKLIVS
ELVAGGARVQFVKEGLTFSGEADPYSELMLNMMGSFAEFERQLIRSRQMEGIAIRKAAGGYKGVGRKRSITDEQIEVIKS
RVAAGEKKTVIAKDMGISRESIYKLLKANAN

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=187, Percent_Identity=36.3636363636364, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1787638, Length=191, Percent_Identity=30.3664921465969, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1787827, Length=191, Percent_Identity=29.3193717277487, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 21401; Mature: 21270

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS00398 RECOMBINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGERTGRVLGYKRVSTFEQNTARQLEGVKLDLVFEDKVSGKSVDRPELKQLMRTAYKGDL
CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCE
VVVHSMDRLARNLIDLKLIVSELVAGGARVQFVKEGLTFSGEADPYSELMLNMMGSFAEF
EEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
ERQLIRSRQMEGIAIRKAAGGYKGVGRKRSITDEQIEVIKSRVAAGEKKTVIAKDMGISR
HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEHHHCCCCH
ESIYKLLKANAN
HHHHHHHHCCCC
>Mature Secondary Structure 
GERTGRVLGYKRVSTFEQNTARQLEGVKLDLVFEDKVSGKSVDRPELKQLMRTAYKGDL
CCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCE
VVVHSMDRLARNLIDLKLIVSELVAGGARVQFVKEGLTFSGEADPYSELMLNMMGSFAEF
EEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
ERQLIRSRQMEGIAIRKAAGGYKGVGRKRSITDEQIEVIKSRVAAGEKKTVIAKDMGISR
HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEHHHCCCCH
ESIYKLLKANAN
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2992807; 6312271; 3029727 [H]