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The map label for this gene is ydeM [C]

Identifier: 118579699

GI number: 118579699

Start: 1334008

End: 1335042

Strand: Direct

Name: ydeM [C]

Synonym: Ppro_1270

Alternate gene names: 118579699

Gene position: 1334008-1335042 (Clockwise)

Preceding gene: 118579698

Following gene: 118579700

Centisome position: 33.28

GC content: 68.89

Gene sequence:

>1035_bases
ATGCCCACGATCAGGTACCTGGTGCTTGGGCTGACCACGCGCTGCAACCTCTCCTGCGCCTATTGCTACCATGCCGGGCT
GGAGCGGGGGATGGACATGTCCCCCGAGGTGGCGCGGACGGCCCTGGACCTGGTAGCCCTCGGGGAGGGGCCGCTGCATG
TCCAGCTGAGCGGCGGCGAACCGACGCTGGCGCGGGAGATGGTCCGATATGTGGTCGCGGAGATTCGCCGGTTGAAACGC
CCCTGCACGGTCGGCATCCAGACCAACGCCACCCTGCTGGACGAGGACCTGGTCCGTTTCCTGGGGGAGCATGGGGTGCA
GGTGGGGGTCAGCCTGGATGGTCCTCCCGCGATCCAGCAAAGGCTGAGGGGGGAGGCTGATAAGGCCCTGCTCGGCCTCA
CACTGCTGGAAAAGATGGGGGTCCCCTTCCGGGTGACGACGGTGGTCGGTTCCGAGAACTGTGGGCAATTGTCACGTCTG
GGGCTGATGCTGGCCGGGTTCCGCTGCGCGCGCGGCATCGGGCTGGACCTGCTGGTGGCGCGGGGGGGAGGCTGTTCCGG
GGGGATGGAGCTGCCCGATCCCCGGATCCTGGAACAGGAGGTGGGGTCCCTGGTGCGACTGCTCGCCGCGGTGAACGGCC
GGCGGAGCGTTCCCCTGCGGCTGCGCGAGCTGGATCTGGTCGGAAAAGCTCTGTCGGGAAAGAGGGGAAAAGGGTGGTTC
TGCCATGCCTGTCTCGGCGAGAGCCTGGCGGTCCACCCCGACGGCCGGCTCTACCCCTGCGGCCAGACCCTGGGGGACGA
CCGTTTCGAAGCAGGCAGCCTGTCTCACCCCCGCCTGAGCCGACTGCGCTGGAATGATCCGCGGCCCCTGGGGTCGCCGG
ACTGTCCCGGCTGTCCCCTGGAAGGGAGCTGTCCGGGGGAGTGCCCCTCCAGGCTGTACTACAACCGCTCCTCCCGTCCC
GATCTGGCCTGCGCCGTCTATCGCGGCTGCCTCGCCGCCCTGGAGGGGGAGGGGCGGCAAGCCGTGTCCTTATGA

Upstream 100 bases:

>100_bases
CCAACATCGGCAGGAAAGGGGGCTCCAACGTGGCCGCAGCGGTGATCAACGCCCTGGCCGTGCTGGCCGCGCCGTGTCCC
TGCCTCTGAACAGGTGCGTT

Downstream 100 bases:

>100_bases
ATCGCTCCTTTCCTATGGTTATTCCCGCCTGTTTCTGCTATGTAAAAACGCTCCCTCCTGTAGGTCCCCGTCCCGGTGTC
GTCACCTTTTTCCGGAATAT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MPTIRYLVLGLTTRCNLSCAYCYHAGLERGMDMSPEVARTALDLVALGEGPLHVQLSGGEPTLAREMVRYVVAEIRRLKR
PCTVGIQTNATLLDEDLVRFLGEHGVQVGVSLDGPPAIQQRLRGEADKALLGLTLLEKMGVPFRVTTVVGSENCGQLSRL
GLMLAGFRCARGIGLDLLVARGGGCSGGMELPDPRILEQEVGSLVRLLAAVNGRRSVPLRLRELDLVGKALSGKRGKGWF
CHACLGESLAVHPDGRLYPCGQTLGDDRFEAGSLSHPRLSRLRWNDPRPLGSPDCPGCPLEGSCPGECPSRLYYNRSSRP
DLACAVYRGCLAALEGEGRQAVSL

Sequences:

>Translated_344_residues
MPTIRYLVLGLTTRCNLSCAYCYHAGLERGMDMSPEVARTALDLVALGEGPLHVQLSGGEPTLAREMVRYVVAEIRRLKR
PCTVGIQTNATLLDEDLVRFLGEHGVQVGVSLDGPPAIQQRLRGEADKALLGLTLLEKMGVPFRVTTVVGSENCGQLSRL
GLMLAGFRCARGIGLDLLVARGGGCSGGMELPDPRILEQEVGSLVRLLAAVNGRRSVPLRLRELDLVGKALSGKRGKGWF
CHACLGESLAVHPDGRLYPCGQTLGDDRFEAGSLSHPRLSRLRWNDPRPLGSPDCPGCPLEGSCPGECPSRLYYNRSSRP
DLACAVYRGCLAALEGEGRQAVSL
>Mature_343_residues
PTIRYLVLGLTTRCNLSCAYCYHAGLERGMDMSPEVARTALDLVALGEGPLHVQLSGGEPTLAREMVRYVVAEIRRLKRP
CTVGIQTNATLLDEDLVRFLGEHGVQVGVSLDGPPAIQQRLRGEADKALLGLTLLEKMGVPFRVTTVVGSENCGQLSRLG
LMLAGFRCARGIGLDLLVARGGGCSGGMELPDPRILEQEVGSLVRLLAAVNGRRSVPLRLRELDLVGKALSGKRGKGWFC
HACLGESLAVHPDGRLYPCGQTLGDDRFEAGSLSHPRLSRLRWNDPRPLGSPDCPGCPLEGSCPGECPSRLYYNRSSRPD
LACAVYRGCLAALEGEGRQAVSL

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 36981; Mature: 36850

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: PS01305 MOAA_NIFB_PQQE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTIRYLVLGLTTRCNLSCAYCYHAGLERGMDMSPEVARTALDLVALGEGPLHVQLSGGE
CCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCEEEEECCCC
PTLAREMVRYVVAEIRRLKRPCTVGIQTNATLLDEDLVRFLGEHGVQVGVSLDGPPAIQQ
CHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHH
RLRGEADKALLGLTLLEKMGVPFRVTTVVGSENCGQLSRLGLMLAGFRCARGIGLDLLVA
HHCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
RGGGCSGGMELPDPRILEQEVGSLVRLLAAVNGRRSVPLRLRELDLVGKALSGKRGKGWF
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCCCCEE
CHACLGESLAVHPDGRLYPCGQTLGDDRFEAGSLSHPRLSRLRWNDPRPLGSPDCPGCPL
EEEECCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
EGSCPGECPSRLYYNRSSRPDLACAVYRGCLAALEGEGRQAVSL
CCCCCCCCCHHHEECCCCCCCHHHHHHHHHHHHHCCCCCEECCC
>Mature Secondary Structure 
PTIRYLVLGLTTRCNLSCAYCYHAGLERGMDMSPEVARTALDLVALGEGPLHVQLSGGE
CCCEEEEEECCCCCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCEEEEECCCC
PTLAREMVRYVVAEIRRLKRPCTVGIQTNATLLDEDLVRFLGEHGVQVGVSLDGPPAIQQ
CHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHH
RLRGEADKALLGLTLLEKMGVPFRVTTVVGSENCGQLSRLGLMLAGFRCARGIGLDLLVA
HHCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
RGGGCSGGMELPDPRILEQEVGSLVRLLAAVNGRRSVPLRLRELDLVGKALSGKRGKGWF
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCCCCEE
CHACLGESLAVHPDGRLYPCGQTLGDDRFEAGSLSHPRLSRLRWNDPRPLGSPDCPGCPL
EEEECCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
EGSCPGECPSRLYYNRSSRPDLACAVYRGCLAALEGEGRQAVSL
CCCCCCCCCHHHEECCCCCCCHHHHHHHHHHHHHCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]