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The map label for this gene is yddU [C]

Identifier: 118579631

GI number: 118579631

Start: 1254702

End: 1255136

Strand: Direct

Name: yddU [C]

Synonym: Ppro_1202

Alternate gene names: 118579631

Gene position: 1254702-1255136 (Clockwise)

Preceding gene: 118579630

Following gene: 118579632

Centisome position: 31.3

GC content: 58.85

Gene sequence:

>435_bases
ATGGACAGACGCTTGAATCAGCTGCTCAATGAAGCGCCGGACGCGATTATCATTGCCGACAGGGAAGGGGGTGTCCGCTT
CTGGAACCGAGGGGCGGAATTGATGTTTGGCCATAGTGCGGCCGAAGCCGTGGGCCAATCGCTCGATCTGATCATCCCCG
AAAACCTGCGCAAGCGCCACTGGGAAGGCTACTGGCGGGTGATGGCCTCCGGTGAGACCAAGTACAAAACCGGCCTGCTC
TCGTCTCCTGGCGTCCGCAAGGACGGCAGCCGCGTTTCGCTGGAATTCAGCATGGTAATGCTGCGCGACGAGGCCGGAGC
CATGCAGGGATGCGCCGCAATCATGCGCGATGTGACCGAACGATGGACGAGGGAGAAGGAACTGAAGGAGCGTTTGACTG
CCTGCGAAACAAAACTGGCAGCAGTATCTGTTTAA

Upstream 100 bases:

>100_bases
CATCAAGGCCATTCTGGGGTAGCGGAATGACACGATAAACGATTGACAACACACGCCTCGTGGTTCTTCGCGAGGCGTGT
GTCATTTCTGGGGAGGAACT

Downstream 100 bases:

>100_bases
TCTCTTGTGATTTTGGCCTTTACCAAAAACAATCCAAAGGGAGGGATTTTGTCATGGGCGTTCCGATAAACAAAACCATA
ACCTGGGTAGGCAAGGTGGA

Product: putative PAS/PAC sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MDRRLNQLLNEAPDAIIIADREGGVRFWNRGAELMFGHSAAEAVGQSLDLIIPENLRKRHWEGYWRVMASGETKYKTGLL
SSPGVRKDGSRVSLEFSMVMLRDEAGAMQGCAAIMRDVTERWTREKELKERLTACETKLAAVSV

Sequences:

>Translated_144_residues
MDRRLNQLLNEAPDAIIIADREGGVRFWNRGAELMFGHSAAEAVGQSLDLIIPENLRKRHWEGYWRVMASGETKYKTGLL
SSPGVRKDGSRVSLEFSMVMLRDEAGAMQGCAAIMRDVTERWTREKELKERLTACETKLAAVSV
>Mature_144_residues
MDRRLNQLLNEAPDAIIIADREGGVRFWNRGAELMFGHSAAEAVGQSLDLIIPENLRKRHWEGYWRVMASGETKYKTGLL
SSPGVRKDGSRVSLEFSMVMLRDEAGAMQGCAAIMRDVTERWTREKELKERLTACETKLAAVSV

Specific function: Unknown

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 16212; Mature: 16212

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS50112 PAS ; PS50113 PAC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRRLNQLLNEAPDAIIIADREGGVRFWNRGAELMFGHSAAEAVGQSLDLIIPENLRKRH
CCHHHHHHHHHCCCEEEEEECCCCCCEECCCCCEEECCHHHHHHCCCCCEECCHHHHHHH
WEGYWRVMASGETKYKTGLLSSPGVRKDGSRVSLEFSMVMLRDEAGAMQGCAAIMRDVTE
HHHHEEEEECCCCHHHCCCCCCCCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHH
RWTREKELKERLTACETKLAAVSV
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDRRLNQLLNEAPDAIIIADREGGVRFWNRGAELMFGHSAAEAVGQSLDLIIPENLRKRH
CCHHHHHHHHHCCCEEEEEECCCCCCEECCCCCEEECCHHHHHHCCCCCEECCHHHHHHH
WEGYWRVMASGETKYKTGLLSSPGVRKDGSRVSLEFSMVMLRDEAGAMQGCAAIMRDVTE
HHHHEEEEECCCCHHHCCCCCCCCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHH
RWTREKELKERLTACETKLAAVSV
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]