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The map label for this gene is yqxC [H]

Identifier: 118579586

GI number: 118579586

Start: 1203568

End: 1204671

Strand: Direct

Name: yqxC [H]

Synonym: Ppro_1155

Alternate gene names: 118579586

Gene position: 1203568-1204671 (Clockwise)

Preceding gene: 118579585

Following gene: 118579587

Centisome position: 30.03

GC content: 65.49

Gene sequence:

>1104_bases
ATGGCCGCCAGGCAGCGCCTCGACAAACTGGTGCTGGAGCGGGGACTGGCCCCCTCGCGGGAGAAAGCCCAGGCCCTGAT
CATGGCCGGCCAGGTGATCGTGGATGACCATGTGGCCGACAAGGCCGGGCAGCAGGTGGCTGTAGACGCCGAGATCCGGG
TCAGGGGTGAGACGCTCCCCTTTGTCAGCCGCGGCGGTCTCAAGCTGAGGCGCGCGCTGGACGAATTTGCTGTGGACGTG
AGCGGCCTGGTGGCGCTGGACGTGGGCGCCTCCACCGGCGGCTTCACCGACTGCCTGCTACAGGCCGGGGCCGCCAGGGT
TTTTGCGGTGGATGTGGGCTACGGACAGTTGGCCTGGAAGCTGCAAAAAGACCCGCGGGTGGTCAGCATGGAGCGGACCA
ACATCCGCCACCTGATGCCGGAGCAGCTGGACGGCGTGCCCGACCTGGCGGTAATCGACGCCTCTTTCATCTCGCTTGCC
AAGGTGCTGCCCGCCACGGTCGGCCTGATCAGGCCGGGTGGCCGCATCATCGCCCTGATCAAGCCGCAGTTCGAGGTGGG
CAGGGGGCAGGTGGGCAAGGGGGGCATCGTGCGCGACCCGGCTGCCCACGGGAGAGCCGTCGAAGGGGTACGCCAGGTTG
CCTTGGAGCTGGGACTGACCGTTGCCGGCCTGTGCGACTCACCCATCACCGGTGCCGACGGGAACCGGGAATTCCTGATC
CTGCTTGAGCTGGGGGCAGCTGTCCCAGAGGAGGTGTGCGTGGAGAACTGCATTTTCTGCAAGATAATCCGGGGGGAGAT
CCCCTCGAAAAAGGTGTATGAGGATGAACGGATGCTGGTGGTTGAGGACGTGGCGCCCCAGGCTCCGCTGCACCTGCTGC
TGATGCCCAAGCGTCATTTCGTTAACTGTCTGGACATGGCCGGGAAGGACGAAGAGCTGGTGGGCGCCATCTTCAGAAAG
GCCGGGGAGATCGCCCGCCAGAAGGGGTACGACGCATCCGGTTTCAGGGTAGTGCAGAACAACGGAGCCGGTGCGGGGCA
GTCGGTGTTTCATATCCATTTTCACCTGCTGGCCGGGCGCGCCTTTGCATGGCCGCCGGGCTAG

Upstream 100 bases:

>100_bases
TCGTCACCCTAGTGGACCGTGAAGAGGGAGGCCGGGAAAATATCGAGGCCGAGGGGTACCAGCTGCGGACGATCTTCACC
AGATCCCAGATCGTGGGCTG

Downstream 100 bases:

>100_bases
GATCGGAGAGCGACATGAGAGCTGTGCTTGGAATGGCGATGGTTCTGGCGTTGGCGGCGCCCATTGGCGCGGAGACCTAT
TCCTGGGTGGATGACACGGG

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MAARQRLDKLVLERGLAPSREKAQALIMAGQVIVDDHVADKAGQQVAVDAEIRVRGETLPFVSRGGLKLRRALDEFAVDV
SGLVALDVGASTGGFTDCLLQAGAARVFAVDVGYGQLAWKLQKDPRVVSMERTNIRHLMPEQLDGVPDLAVIDASFISLA
KVLPATVGLIRPGGRIIALIKPQFEVGRGQVGKGGIVRDPAAHGRAVEGVRQVALELGLTVAGLCDSPITGADGNREFLI
LLELGAAVPEEVCVENCIFCKIIRGEIPSKKVYEDERMLVVEDVAPQAPLHLLLMPKRHFVNCLDMAGKDEELVGAIFRK
AGEIARQKGYDASGFRVVQNNGAGAGQSVFHIHFHLLAGRAFAWPPG

Sequences:

>Translated_367_residues
MAARQRLDKLVLERGLAPSREKAQALIMAGQVIVDDHVADKAGQQVAVDAEIRVRGETLPFVSRGGLKLRRALDEFAVDV
SGLVALDVGASTGGFTDCLLQAGAARVFAVDVGYGQLAWKLQKDPRVVSMERTNIRHLMPEQLDGVPDLAVIDASFISLA
KVLPATVGLIRPGGRIIALIKPQFEVGRGQVGKGGIVRDPAAHGRAVEGVRQVALELGLTVAGLCDSPITGADGNREFLI
LLELGAAVPEEVCVENCIFCKIIRGEIPSKKVYEDERMLVVEDVAPQAPLHLLLMPKRHFVNCLDMAGKDEELVGAIFRK
AGEIARQKGYDASGFRVVQNNGAGAGQSVFHIHFHLLAGRAFAWPPG
>Mature_366_residues
AARQRLDKLVLERGLAPSREKAQALIMAGQVIVDDHVADKAGQQVAVDAEIRVRGETLPFVSRGGLKLRRALDEFAVDVS
GLVALDVGASTGGFTDCLLQAGAARVFAVDVGYGQLAWKLQKDPRVVSMERTNIRHLMPEQLDGVPDLAVIDASFISLAK
VLPATVGLIRPGGRIIALIKPQFEVGRGQVGKGGIVRDPAAHGRAVEGVRQVALELGLTVAGLCDSPITGADGNREFLIL
LELGAAVPEEVCVENCIFCKIIRGEIPSKKVYEDERMLVVEDVAPQAPLHLLLMPKRHFVNCLDMAGKDEELVGAIFRKA
GEIARQKGYDASGFRVVQNNGAGAGQSVFHIHFHLLAGRAFAWPPG

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI4885413, Length=112, Percent_Identity=43.75, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI14211923, Length=111, Percent_Identity=39.6396396396396, Blast_Score=97, Evalue=2e-20,
Organism=Escherichia coli, GI1787346, Length=106, Percent_Identity=41.5094339622642, Blast_Score=86, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17506713, Length=122, Percent_Identity=45.0819672131148, Blast_Score=119, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6320078, Length=106, Percent_Identity=40.5660377358491, Blast_Score=73, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24581222, Length=113, Percent_Identity=42.4778761061947, Blast_Score=102, Evalue=5e-22,
Organism=Drosophila melanogaster, GI28574010, Length=113, Percent_Identity=42.4778761061947, Blast_Score=101, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 39318; Mature: 39187

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS50889 S4 ; PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAARQRLDKLVLERGLAPSREKAQALIMAGQVIVDDHVADKAGQQVAVDAEIRVRGETLP
CCHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEEECHHHHHCCCEEEEEEEEEEECCCCC
FVSRGGLKLRRALDEFAVDVSGLVALDVGASTGGFTDCLLQAGAARVFAVDVGYGQLAWK
CCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCEEEEE
LQKDPRVVSMERTNIRHLMPEQLDGVPDLAVIDASFISLAKVLPATVGLIRPGGRIIALI
ECCCCEEEEEECCCHHHCCHHHHCCCCCEEEHHHHHHHHHHHHHHHHHEECCCCEEEEEE
KPQFEVGRGQVGKGGIVRDPAAHGRAVEGVRQVALELGLTVAGLCDSPITGADGNREFLI
CCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEE
LLELGAAVPEEVCVENCIFCKIIRGEIPSKKVYEDERMLVVEDVAPQAPLHLLLMPKRHF
EEECCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEEECHHHH
VNCLDMAGKDEELVGAIFRKAGEIARQKGYDASGFRVVQNNGAGAGQSVFHIHFHLLAGR
HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECC
AFAWPPG
EECCCCC
>Mature Secondary Structure 
AARQRLDKLVLERGLAPSREKAQALIMAGQVIVDDHVADKAGQQVAVDAEIRVRGETLP
CHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEEECHHHHHCCCEEEEEEEEEEECCCCC
FVSRGGLKLRRALDEFAVDVSGLVALDVGASTGGFTDCLLQAGAARVFAVDVGYGQLAWK
CCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCEEEEE
LQKDPRVVSMERTNIRHLMPEQLDGVPDLAVIDASFISLAKVLPATVGLIRPGGRIIALI
ECCCCEEEEEECCCHHHCCHHHHCCCCCEEEHHHHHHHHHHHHHHHHHEECCCCEEEEEE
KPQFEVGRGQVGKGGIVRDPAAHGRAVEGVRQVALELGLTVAGLCDSPITGADGNREFLI
CCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEE
LLELGAAVPEEVCVENCIFCKIIRGEIPSKKVYEDERMLVVEDVAPQAPLHLLLMPKRHF
EEECCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEEECHHHH
VNCLDMAGKDEELVGAIFRKAGEIARQKGYDASGFRVVQNNGAGAGQSVFHIHFHLLAGR
HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECC
AFAWPPG
EECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]